scaffold21872 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold21872 |
1 |
398 |
- |
RS158 |
Unspecified |
| scaffold21872 |
710 |
737 |
+ |
(TTTCT)n |
Simple_repeat |
| scaffold21872 |
1324 |
1400 |
+ |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold21872 |
1480 |
1518 |
+ |
(AGCAGC)n |
Simple_repeat |
| scaffold21872 |
1516 |
3040 |
+ |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold21872 |
3230 |
3796 |
+ |
Copia-10_BD-I |
LTR/Copia |
| scaffold21872 |
3809 |
4137 |
+ |
Copia-10_BD-I |
LTR/Copia |
| scaffold21872 |
4142 |
4485 |
+ |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold21872 |
5101 |
5152 |
+ |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold21872 |
5334 |
5668 |
+ |
PL530 |
Unspecified |
| scaffold21872 |
5758 |
6410 |
+ |
PL530 |
Unspecified |
| scaffold21872 |
6957 |
7035 |
- |
PL143 |
Unspecified |
| scaffold21872 |
7638 |
7702 |
+ |
A-rich |
Low_complexity |
| scaffold21872 |
8589 |
8642 |
+ |
(TTATTT)n |
Simple_repeat |
| scaffold21872 |
8809 |
8865 |
+ |
(ATTTTT)n |
Simple_repeat |
| scaffold21872 |
9035 |
9094 |
+ |
(TTATAT)n |
Simple_repeat |
| scaffold21872 |
11641 |
11709 |
+ |
(GTGAATA)n |
Simple_repeat |
| scaffold21872 |
12061 |
12979 |
- |
PL787 |
Unspecified |
| scaffold21872 |
13245 |
13287 |
+ |
A-rich |
Low_complexity |
| scaffold21872 |
14727 |
14774 |
+ |
(TTTTGGA)n |
Simple_repeat |
| scaffold21872 |
14778 |
14813 |
+ |
(GAAAAT)n |
Simple_repeat |
| scaffold21872 |
15064 |
15131 |
+ |
(CAT)n |
Simple_repeat |
| scaffold21872 |
15353 |
15968 |
- |
Gypsy1-PTR_I-int |
LTR/Gypsy |
| scaffold21872 |
16925 |
17924 |
+ |
RS254 |
Unspecified |
| scaffold21872 |
18278 |
19586 |
+ |
RS51 |
Unspecified |
| scaffold21872 |
18659 |
19697 |
- |
PL956 |
Unspecified |
| scaffold21872 |
20139 |
20180 |
+ |
(AACA)n |
Simple_repeat |
| scaffold21872 |
20270 |
20407 |
+ |
A-rich |
Low_complexity |
| scaffold21872 |
20912 |
20967 |
+ |
(CGAAACTTCA)n |
Simple_repeat |
| scaffold21872 |
21706 |
21740 |
+ |
A-rich |
Low_complexity |
| scaffold21872 |
22321 |
22506 |
+ |
Gypsy-I_MT |
LTR/Gypsy |
| scaffold21872 |
23167 |
23212 |
+ |
(CAAGCAGCT)n |
Simple_repeat |
| scaffold21872 |
23430 |
23540 |
+ |
A-rich |
Low_complexity |
| scaffold21872 |
23677 |
24870 |
+ |
Gypsy-I_MT |
LTR/Gypsy |
| scaffold21872 |
25258 |
26074 |
+ |
GYPSY3-I_MT |
LTR/Gypsy |
| scaffold21872 |
26130 |
26525 |
- |
PL888 |
Unspecified |
| scaffold21872 |
26615 |
26655 |
+ |
A-rich |
Low_complexity |
| scaffold21872 |
26797 |
28229 |
+ |
PL554 |
Unspecified |
| scaffold21872 |
27767 |
28588 |
+ |
PL921 |
Unspecified |
| scaffold21872 |
27994 |
29143 |
+ |
RS3063 |
Unspecified |
| scaffold21872 |
28792 |
30106 |
+ |
PL495 |
Unspecified |
| scaffold21872 |
29095 |
31037 |
+ |
(CCTCAG)n |
Simple_repeat |
| scaffold21872 |
30974 |
31037 |
+ |
(CCTCAG)n |
Simple_repeat |
| scaffold21872 |
31287 |
31378 |
+ |
(AC)n |
Simple_repeat |
| scaffold21872 |
32459 |
32498 |
+ |
(CAAGCA)n |
Simple_repeat |
| scaffold21872 |
34599 |
34823 |
+ |
PL897 |
Unspecified |
| scaffold21872 |
34821 |
37706 |
+ |
RIRE1_I-int |
LTR/Copia |
| scaffold21872 |
37610 |
39149 |
- |
PL816 |
Unspecified |
| scaffold21872 |
39386 |
39458 |
+ |
(TAATAT)n |
Simple_repeat |
| scaffold21872 |
40412 |
40982 |
- |
Ogre-VP1_I-int |
LTR/Gypsy |
| scaffold21872 |
41248 |
41573 |
- |
Ogre-VP1_I-int |
LTR/Gypsy |
| scaffold21872 |
41573 |
42288 |
- |
PL299 |
Unspecified |
| scaffold21872 |
41922 |
42383 |
- |
RS3091 |
Unspecified |
| scaffold21872 |
42996 |
43413 |
+ |
PL143 |
Unspecified |
| scaffold21872 |
43645 |
43705 |
+ |
(TTTGTT)n |
Simple_repeat |
| scaffold21872 |
44014 |
44567 |
- |
PL969 |
Unspecified |
| scaffold21872 |
44073 |
44635 |
- |
PL951 |
Unspecified |
| scaffold21872 |
44643 |
44681 |
+ |
(TGAATAG)n |
Simple_repeat |
| scaffold21872 |
46316 |
47586 |
- |
Gypsy-53_GM-I |
LTR/Gypsy |
| scaffold21872 |
46316 |
47934 |
- |
Gypsy-53_GM-I |
LTR/Gypsy |
| scaffold21872 |
47384 |
47934 |
- |
RS5888 |
Unspecified |
| scaffold21872 |
48599 |
48701 |
- |
Gypsy-53_GM-I |
LTR/Gypsy |
| scaffold21872 |
51491 |
51522 |
+ |
(GCCG)n |
Simple_repeat |
| scaffold21872 |
51844 |
52390 |
- |
PL928 |
Unspecified |
| scaffold21872 |
52415 |
52993 |
- |
RS5034 |
Unspecified |
| scaffold21872 |
53693 |
53737 |
+ |
A-rich |
Low_complexity |
| scaffold21872 |
53755 |
54025 |
+ |
RS2067 |
Unspecified |
| scaffold21872 |
54020 |
54271 |
- |
RS247 |
Unspecified |
| scaffold21872 |
54164 |
54285 |
- |
RS247 |
Unspecified |
| scaffold21872 |
54496 |
54945 |
+ |
RS2710 |
Unspecified |
| scaffold21872 |
55114 |
55141 |
+ |
(GTT)n |
Simple_repeat |
| scaffold21872 |
55269 |
55699 |
+ |
RS2578 |
Unspecified |
| scaffold21872 |
55704 |
55725 |
+ |
(GGCC)n |
Simple_repeat |
| scaffold21872 |
56605 |
57131 |
+ |
PL880 |
Unspecified |
| scaffold21872 |
57434 |
58403 |
- |
RS655 |
Unspecified |
| scaffold21872 |
58587 |
58631 |
+ |
(TTTTCGT)n |
Simple_repeat |
| scaffold21872 |
58733 |
60130 |
- |
RS357 |
Unspecified |
| scaffold21872 |
60699 |
60755 |
+ |
(GCTTGT)n |
Simple_repeat |
| scaffold21872 |
61119 |
61267 |
+ |
PL535 |
Unspecified |
| scaffold21872 |
61145 |
61269 |
+ |
RS756 |
Unspecified |
| scaffold21872 |
61529 |
62604 |
- |
PL933 |
Unspecified |
| scaffold21872 |
66541 |
66573 |
+ |
(GGCC)n |
Simple_repeat |
| scaffold21872 |
67204 |
67240 |
+ |
(T)n |
Simple_repeat |
| scaffold21872 |
67448 |
67490 |
+ |
(CCAACATA)n |
Simple_repeat |
| scaffold21872 |
67774 |
67811 |
+ |
A-rich |
Low_complexity |
| scaffold21872 |
68100 |
68136 |
+ |
(CCGG)n |
Simple_repeat |
| scaffold21872 |
71091 |
71213 |
- |
RS2067 |
Unspecified |
| scaffold21872 |
71547 |
71647 |
+ |
(TGT)n |
Simple_repeat |
| scaffold21872 |
72016 |
72077 |
+ |
(TGTGTTT)n |
Simple_repeat |
| scaffold21872 |
72367 |
72912 |
+ |
RS5041 |
Unspecified |
| scaffold21872 |
74106 |
77475 |
- |
RIRE1_I-int |
LTR/Copia |
| scaffold21872 |
74646 |
77475 |
- |
RIRE1_I-int |
LTR/Copia |
| scaffold21872 |
77508 |
77813 |
- |
Copia-13_SB-I |
LTR/Copia |
| scaffold21872 |
79322 |
80002 |
+ |
PL405 |
Unspecified |
| scaffold21872 |
80839 |
80887 |
+ |
A-rich |
Low_complexity |
| scaffold21872 |
81265 |
81544 |
- |
RS4822 |
Unspecified |
| scaffold21872 |
81545 |
81780 |
- |
RS1060 |
Unspecified |
| scaffold21872 |
81592 |
81842 |
+ |
RS12409 |
Unspecified |
| scaffold21872 |
81909 |
82043 |
+ |
RS12409 |
Unspecified |
| scaffold21872 |
82084 |
82177 |
+ |
RS12409 |
Unspecified |
| scaffold21872 |
82140 |
83881 |
- |
RS192 |
Unspecified |
| scaffold21872 |
83921 |
83972 |
+ |
(T)n |
Simple_repeat |
| scaffold21872 |
84282 |
84317 |
+ |
(TTTTTG)n |
Simple_repeat |
| scaffold21872 |
85000 |
86879 |
- |
RS105 |
Unspecified |
| scaffold21872 |
88263 |
88973 |
+ |
RS1007 |
Unspecified |
| scaffold21872 |
88353 |
90394 |
+ |
RS869 |
Unspecified |
| scaffold21872 |
91484 |
91527 |
+ |
(TTTCGTT)n |
Simple_repeat |
| scaffold21872 |
91629 |
92135 |
- |
RS357 |
Unspecified |
| scaffold21872 |
92136 |
92647 |
- |
PL933 |
Unspecified |