scaffold2212 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold2212 |
541 |
582 |
+ |
(TGA)n |
Simple_repeat |
| scaffold2212 |
640 |
664 |
+ |
(CT)n |
Simple_repeat |
| scaffold2212 |
667 |
778 |
+ |
(ATT)n |
Simple_repeat |
| scaffold2212 |
853 |
1120 |
+ |
PL787 |
Unspecified |
| scaffold2212 |
1991 |
2038 |
+ |
(ATTTTGA)n |
Simple_repeat |
| scaffold2212 |
2176 |
2257 |
+ |
COP14_I_MT-int |
LTR/Copia |
| scaffold2212 |
2187 |
2299 |
+ |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold2212 |
2706 |
2711 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold2212 |
2712 |
2763 |
+ |
(TTATTAA)n |
Simple_repeat |
| scaffold2212 |
3041 |
3172 |
+ |
A-rich |
Low_complexity |
| scaffold2212 |
3200 |
3242 |
+ |
(AATTTAT)n |
Simple_repeat |
| scaffold2212 |
3533 |
3578 |
+ |
(ATT)n |
Simple_repeat |
| scaffold2212 |
3630 |
3692 |
+ |
(ATAATA)n |
Simple_repeat |
| scaffold2212 |
3705 |
3896 |
- |
RS69 |
Unspecified |
| scaffold2212 |
6125 |
6141 |
+ |
(A)n |
Simple_repeat |
| scaffold2212 |
6250 |
6780 |
+ |
RS11258 |
Unspecified |
| scaffold2212 |
6324 |
7136 |
+ |
PL238 |
Unspecified |
| scaffold2212 |
7173 |
7285 |
+ |
(TAT)n |
Simple_repeat |
| scaffold2212 |
8652 |
8695 |
+ |
(TAGTAA)n |
Simple_repeat |
| scaffold2212 |
9301 |
9373 |
+ |
(ATATAGT)n |
Simple_repeat |
| scaffold2212 |
11052 |
11090 |
+ |
A-rich |
Low_complexity |
| scaffold2212 |
11271 |
11320 |
+ |
RS1580 |
Unspecified |
| scaffold2212 |
11615 |
12432 |
- |
RS66 |
Unspecified |
| scaffold2212 |
12511 |
12545 |
+ |
A-rich |
Low_complexity |
| scaffold2212 |
12931 |
13013 |
+ |
(TGTA)n |
Simple_repeat |
| scaffold2212 |
13147 |
13315 |
+ |
(TGT)n |
Simple_repeat |
| scaffold2212 |
13394 |
13732 |
- |
RS7521 |
Unspecified |
| scaffold2212 |
14051 |
14779 |
+ |
RS604 |
Unspecified |
| scaffold2212 |
14775 |
14830 |
+ |
(TTACAT)n |
Simple_repeat |
| scaffold2212 |
15002 |
15101 |
+ |
RS1580 |
Unspecified |
| scaffold2212 |
15019 |
15123 |
+ |
RS1580 |
Unspecified |
| scaffold2212 |
15041 |
15145 |
+ |
RS1580 |
Unspecified |
| scaffold2212 |
15061 |
15156 |
+ |
RS1580 |
Unspecified |
| scaffold2212 |
16405 |
16454 |
- |
Gypsy-9_EPa-I |
LTR/Gypsy |
| scaffold2212 |
16999 |
17148 |
- |
Gypsy35-ZM_I-int |
LTR/Gypsy |
| scaffold2212 |
17242 |
17590 |
+ |
Gypsy-118_GM-I |
LTR/Gypsy |
| scaffold2212 |
17949 |
18973 |
+ |
GYPSY3-I_MT |
LTR/Gypsy |
| scaffold2212 |
19241 |
19299 |
+ |
Gypsy-10_Pru-LTR |
LTR/Gypsy |
| scaffold2212 |
21007 |
21047 |
+ |
A-rich |
Low_complexity |
| scaffold2212 |
21061 |
21586 |
- |
RS122 |
Unspecified |
| scaffold2212 |
21482 |
21985 |
- |
RS122 |
Unspecified |
| scaffold2212 |
21873 |
22669 |
- |
RS122 |
Unspecified |
| scaffold2212 |
24577 |
24643 |
+ |
(CAGCTT)n |
Simple_repeat |
| scaffold2212 |
25532 |
26008 |
- |
RS399 |
Unspecified |
| scaffold2212 |
26008 |
26844 |
+ |
RS2516 |
Unspecified |
| scaffold2212 |
27870 |
27904 |
+ |
(TTGA)n |
Simple_repeat |
| scaffold2212 |
28224 |
28277 |
+ |
(TTTTCGT)n |
Simple_repeat |
| scaffold2212 |
29083 |
29677 |
+ |
RS67 |
Unspecified |
| scaffold2212 |
29159 |
29753 |
+ |
RS67 |
Unspecified |
| scaffold2212 |
29233 |
29827 |
+ |
RS67 |
Unspecified |
| scaffold2212 |
29307 |
29902 |
+ |
RS67 |
Unspecified |
| scaffold2212 |
29381 |
29975 |
+ |
RS67 |
Unspecified |
| scaffold2212 |
29455 |
30049 |
+ |
RS67 |
Unspecified |
| scaffold2212 |
29529 |
30123 |
+ |
RS67 |
Unspecified |
| scaffold2212 |
29603 |
30195 |
+ |
RS67 |
Unspecified |
| scaffold2212 |
29677 |
30271 |
+ |
RS67 |
Unspecified |
| scaffold2212 |
31670 |
32211 |
- |
RS658 |
Unspecified |
| scaffold2212 |
32533 |
32577 |
+ |
(T)n |
Simple_repeat |
| scaffold2212 |
32853 |
32888 |
+ |
A-rich |
Low_complexity |
| scaffold2212 |
34060 |
34094 |
+ |
(ACGATA)n |
Simple_repeat |
| scaffold2212 |
36579 |
36625 |
+ |
(TATT)n |
Simple_repeat |
| scaffold2212 |
37395 |
37420 |
+ |
(A)n |
Simple_repeat |
| scaffold2212 |
37464 |
37497 |
+ |
(ATTTT)n |
Simple_repeat |
| scaffold2212 |
38021 |
38093 |
+ |
STOWAWAY2_SB |
DNA/TcMar-Stowaway |
| scaffold2212 |
38161 |
38211 |
+ |
A-rich |
Low_complexity |
| scaffold2212 |
38367 |
38402 |
+ |
(ACTTTAA)n |
Simple_repeat |
| scaffold2212 |
38757 |
38810 |
+ |
(TCGCCTTG)n |
Simple_repeat |
| scaffold2212 |
39570 |
39602 |
+ |
(GTTAAT)n |
Simple_repeat |
| scaffold2212 |
42448 |
42813 |
+ |
RS6506 |
Unspecified |
| scaffold2212 |
42869 |
42920 |
+ |
Helitron-2_SMo |
RC/Helitron |
| scaffold2212 |
48665 |
48759 |
- |
HADES_TA |
DNA/TcMar-Stowaway |
| scaffold2212 |
49799 |
49844 |
+ |
(CCATCAT)n |
Simple_repeat |
| scaffold2212 |
50340 |
50375 |
+ |
(GACAC)n |
Simple_repeat |
| scaffold2212 |
50889 |
50936 |
+ |
HAT-N10_Mad |
DNA/hAT-Ac |
| scaffold2212 |
51327 |
51402 |
+ |
(ATTCAA)n |
Simple_repeat |
| scaffold2212 |
51450 |
51559 |
+ |
(TTA)n |
Simple_repeat |
| scaffold2212 |
52342 |
52368 |
+ |
(T)n |
Simple_repeat |
| scaffold2212 |
52515 |
52594 |
+ |
(TTA)n |
Simple_repeat |
| scaffold2212 |
52965 |
55421 |
- |
RS254 |
Unspecified |
| scaffold2212 |
56148 |
56179 |
+ |
(TG)n |
Simple_repeat |
| scaffold2212 |
58284 |
58444 |
+ |
RS1317 |
Unspecified |
| scaffold2212 |
59324 |
59343 |
+ |
(G)n |
Simple_repeat |
| scaffold2212 |
61352 |
61464 |
- |
Gypsy-29_PTr-LTR |
LTR/Gypsy |
| scaffold2212 |
62763 |
62810 |
- |
Gypsy-LTR_MT |
LTR/Gypsy |
| scaffold2212 |
62949 |
63538 |
- |
Gypsy-23_VV-I |
LTR/Gypsy |
| scaffold2212 |
63568 |
63601 |
- |
Gypsy-12_Mad-I |
LTR/Gypsy |
| scaffold2212 |
63599 |
64016 |
- |
PL901 |
Unspecified |
| scaffold2212 |
64200 |
65854 |
- |
Gypsy-I_MT |
LTR/Gypsy |
| scaffold2212 |
66038 |
66107 |
+ |
(TGTTTTT)n |
Simple_repeat |
| scaffold2212 |
66289 |
66321 |
+ |
(TCT)n |
Simple_repeat |
| scaffold2212 |
66959 |
67196 |
- |
Gypsy-I_MT |
LTR/Gypsy |
| scaffold2212 |
67756 |
67794 |
+ |
(TTCTTT)n |
Simple_repeat |
| scaffold2212 |
69005 |
70197 |
+ |
PL956 |
Unspecified |
| scaffold2212 |
69264 |
71054 |
- |
RS51 |
Unspecified |
| scaffold2212 |
70181 |
71282 |
- |
RS254 |
Unspecified |
| scaffold2212 |
71355 |
71399 |
+ |
A-rich |
Low_complexity |
| scaffold2212 |
72668 |
72936 |
+ |
PL926 |
Unspecified |
| scaffold2212 |
72938 |
73095 |
+ |
RS348 |
Unspecified |
| scaffold2212 |
73943 |
74045 |
+ |
(AACAAG)n |
Simple_repeat |
| scaffold2212 |
75053 |
75130 |
- |
Gypsy-9_EPa-I |
LTR/Gypsy |
| scaffold2212 |
76642 |
76667 |
+ |
EnSpm-N2_TA |
DNA/CMC-EnSpm |
| scaffold2212 |
76739 |
76920 |
- |
RS420 |
Unspecified |
| scaffold2212 |
77949 |
77975 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold2212 |
78640 |
78685 |
+ |
(TGTT)n |
Simple_repeat |
| scaffold2212 |
79562 |
80184 |
+ |
Gypsy-33_VV-I |
LTR/Gypsy |
| scaffold2212 |
80247 |
80444 |
- |
RS9631 |
Unspecified |
| scaffold2212 |
82846 |
83372 |
- |
RS348 |
Unspecified |
| scaffold2212 |
83383 |
83439 |
+ |
Gypsy-2_CP-LTR |
LTR/Gypsy |
| scaffold2212 |
83524 |
83569 |
+ |
(GCTTAGT)n |
Simple_repeat |
| scaffold2212 |
83772 |
84014 |
+ |
Gypsy-33_VV-I |
LTR/Gypsy |
| scaffold2212 |
84058 |
84167 |
+ |
Gypsy-33_VV-I |
LTR/Gypsy |
| scaffold2212 |
84243 |
84440 |
- |
RS9631 |
Unspecified |
| scaffold2212 |
85171 |
86189 |
+ |
RS599 |
Unspecified |
| scaffold2212 |
88089 |
88126 |
- |
Gypsy-29_PTr-LTR |
LTR/Gypsy |
| scaffold2212 |
88303 |
88355 |
+ |
Gypsy-23_ST-LTR |
LTR/Gypsy |
| scaffold2212 |
88635 |
88675 |
- |
Gypsy-9_EPa-I |
LTR/Gypsy |
| scaffold2212 |
88635 |
88815 |
- |
Gypsy-9_EPa-I |
LTR/Gypsy |
| scaffold2212 |
88665 |
88815 |
+ |
RS1365 |
Unspecified |
| scaffold2212 |
88826 |
89359 |
- |
PL222 |
Unspecified |
| scaffold2212 |
90656 |
90755 |
- |
Gypsy-29_PTr-LTR |
LTR/Gypsy |
| scaffold2212 |
90869 |
90921 |
+ |
Gypsy-23_ST-LTR |
LTR/Gypsy |
| scaffold2212 |
92189 |
92288 |
- |
ATGP7I |
LTR/Gypsy |
| scaffold2212 |
92473 |
92876 |
- |
Gypsy-33_VV-I |
LTR/Gypsy |
| scaffold2212 |
93240 |
93291 |
+ |
SHACOP14_I_MT-int |
LTR/Copia |
| scaffold2212 |
94219 |
94471 |
+ |
RS1398 |
Unspecified |
| scaffold2212 |
94474 |
94814 |
- |
RS1196 |
Unspecified |
| scaffold2212 |
94840 |
94879 |
+ |
Copia-11_CP-I |
LTR/Copia |
| scaffold2212 |
96145 |
96223 |
- |
Gypsy-23_ST-LTR |
LTR/Gypsy |
| scaffold2212 |
96337 |
96435 |
+ |
Gypsy-29_PTr-LTR |
LTR/Gypsy |
| scaffold2212 |
96435 |
97414 |
- |
RS348 |
Unspecified |
| scaffold2212 |
97406 |
97669 |
+ |
RS66 |
Unspecified |
| scaffold2212 |
98062 |
98140 |
- |
Gypsy-23_ST-LTR |
LTR/Gypsy |
| scaffold2212 |
98254 |
98352 |
+ |
Gypsy-29_PTr-LTR |
LTR/Gypsy |
| scaffold2212 |
98352 |
99174 |
- |
RS348 |
Unspecified |
| scaffold2212 |
99245 |
99561 |
+ |
RS1398 |
Unspecified |
| scaffold2212 |
100304 |
100654 |
- |
Gypsy-2_PD-I |
LTR/Gypsy |
| scaffold2212 |
100950 |
101007 |
+ |
(AAGAACA)n |
Simple_repeat |
| scaffold2212 |
101008 |
101300 |
- |
RS1149 |
Unspecified |
| scaffold2212 |
101288 |
101386 |
- |
PL79 |
Unspecified |
| scaffold2212 |
101391 |
101611 |
- |
RS1149 |
Unspecified |
| scaffold2212 |
103298 |
103432 |
- |
RS66 |
Unspecified |
| scaffold2212 |
107172 |
107474 |
- |
RS2155 |
Unspecified |