scaffold2231 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold2231 |
352 |
373 |
+ |
(G)n |
Simple_repeat |
| scaffold2231 |
516 |
552 |
+ |
(TTTTCT)n |
Simple_repeat |
| scaffold2231 |
569 |
890 |
- |
RS1900 |
Unspecified |
| scaffold2231 |
884 |
1416 |
+ |
PL522 |
Unspecified |
| scaffold2231 |
1410 |
1623 |
- |
PL29 |
Unspecified |
| scaffold2231 |
1816 |
1847 |
+ |
(AATA)n |
Simple_repeat |
| scaffold2231 |
2621 |
2682 |
+ |
A-rich |
Low_complexity |
| scaffold2231 |
2750 |
2766 |
+ |
(CT)n |
Simple_repeat |
| scaffold2231 |
2889 |
2918 |
+ |
(ATTCG)n |
Simple_repeat |
| scaffold2231 |
3057 |
3088 |
+ |
(TTTCGC)n |
Simple_repeat |
| scaffold2231 |
3616 |
3657 |
+ |
(GTAG)n |
Simple_repeat |
| scaffold2231 |
4707 |
4736 |
+ |
(ATTTGA)n |
Simple_repeat |
| scaffold2231 |
5587 |
5608 |
+ |
(TTA)n |
Simple_repeat |
| scaffold2231 |
5662 |
5715 |
+ |
(ACAACTAT)n |
Simple_repeat |
| scaffold2231 |
5838 |
5867 |
+ |
(AAGTCCC)n |
Simple_repeat |
| scaffold2231 |
6171 |
6206 |
+ |
(AAGGTG)n |
Simple_repeat |
| scaffold2231 |
8737 |
8778 |
+ |
A-rich |
Low_complexity |
| scaffold2231 |
10678 |
10820 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold2231 |
10979 |
11121 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold2231 |
13611 |
13635 |
+ |
(A)n |
Simple_repeat |
| scaffold2231 |
15378 |
15415 |
+ |
A-rich |
Low_complexity |
| scaffold2231 |
15910 |
16392 |
- |
PL622 |
Unspecified |
| scaffold2231 |
17271 |
17299 |
+ |
(ATCT)n |
Simple_repeat |
| scaffold2231 |
17299 |
17346 |
+ |
(TAATAAT)n |
Simple_repeat |
| scaffold2231 |
17495 |
17521 |
+ |
(T)n |
Simple_repeat |
| scaffold2231 |
19055 |
19256 |
- |
RS18286 |
Unspecified |
| scaffold2231 |
19565 |
19612 |
+ |
(ATTTCT)n |
Simple_repeat |
| scaffold2231 |
19633 |
19763 |
+ |
PL613 |
Unspecified |
| scaffold2231 |
19857 |
20063 |
- |
RS12586 |
Unspecified |
| scaffold2231 |
20420 |
20874 |
+ |
PL100 |
Unspecified |
| scaffold2231 |
21220 |
21300 |
+ |
(AATTC)n |
Simple_repeat |
| scaffold2231 |
21600 |
21801 |
- |
RS7727 |
Unspecified |
| scaffold2231 |
22495 |
22532 |
+ |
(TGG)n |
Simple_repeat |
| scaffold2231 |
25202 |
25560 |
+ |
(TAA)n |
Simple_repeat |
| scaffold2231 |
25517 |
25560 |
+ |
(TAA)n |
Simple_repeat |
| scaffold2231 |
27728 |
27758 |
+ |
(CCAGCT)n |
Simple_repeat |
| scaffold2231 |
32389 |
32569 |
+ |
RS1900 |
Unspecified |
| scaffold2231 |
33365 |
33472 |
+ |
Gypsy-46_STu-I |
LTR/Gypsy |
| scaffold2231 |
34239 |
34264 |
+ |
(A)n |
Simple_repeat |
| scaffold2231 |
34341 |
34382 |
+ |
A-rich |
Low_complexity |
| scaffold2231 |
34531 |
34579 |
+ |
(TAATT)n |
Simple_repeat |
| scaffold2231 |
34578 |
34599 |
+ |
(A)n |
Simple_repeat |
| scaffold2231 |
35511 |
35552 |
+ |
A-rich |
Low_complexity |
| scaffold2231 |
35915 |
35975 |
+ |
(TTTTAT)n |
Simple_repeat |
| scaffold2231 |
37548 |
37616 |
+ |
Gypsy-10_Mad-I |
LTR/Gypsy |
| scaffold2231 |
37639 |
37895 |
- |
PL755 |
Unspecified |
| scaffold2231 |
37703 |
37895 |
- |
PL491 |
Unspecified |
| scaffold2231 |
38324 |
38358 |
+ |
A-rich |
Low_complexity |
| scaffold2231 |
38359 |
38392 |
+ |
GA-rich |
Low_complexity |
| scaffold2231 |
38604 |
38667 |
+ |
Gypsy-10_Mad-I |
LTR/Gypsy |
| scaffold2231 |
39253 |
39312 |
+ |
(TTTATT)n |
Simple_repeat |
| scaffold2231 |
40340 |
40381 |
+ |
A-rich |
Low_complexity |
| scaffold2231 |
41207 |
41241 |
+ |
(GTTTTA)n |
Simple_repeat |
| scaffold2231 |
41285 |
41339 |
+ |
HAT-14_Mad |
DNA/hAT-Tip100 |
| scaffold2231 |
43539 |
43682 |
+ |
(TTGGAT)n |
Simple_repeat |
| scaffold2231 |
43819 |
43875 |
+ |
(AATG)n |
Simple_repeat |
| scaffold2231 |
43940 |
43970 |
+ |
(A)n |
Simple_repeat |
| scaffold2231 |
44460 |
44959 |
+ |
RS52 |
Unspecified |
| scaffold2231 |
45124 |
46150 |
+ |
RS655 |
Unspecified |
| scaffold2231 |
48003 |
48451 |
+ |
PL582 |
Unspecified |
| scaffold2231 |
49312 |
49368 |
+ |
A-rich |
Low_complexity |
| scaffold2231 |
49475 |
49731 |
- |
RS1377 |
Unspecified |
| scaffold2231 |
49878 |
50120 |
- |
RS4 |
Unspecified |
| scaffold2231 |
50405 |
50437 |
+ |
(TCACA)n |
Simple_repeat |
| scaffold2231 |
50448 |
50509 |
+ |
(TC)n |
Simple_repeat |
| scaffold2231 |
51225 |
51263 |
+ |
(TTGCAA)n |
Simple_repeat |
| scaffold2231 |
51463 |
51501 |
+ |
Copia-17_CP-LTR |
LTR/Copia |
| scaffold2231 |
53496 |
53708 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold2231 |
53709 |
53778 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold2231 |
55337 |
55406 |
+ |
(TTTG)n |
Simple_repeat |
| scaffold2231 |
56139 |
56163 |
+ |
(GAATTG)n |
Simple_repeat |
| scaffold2231 |
56649 |
56678 |
+ |
(T)n |
Simple_repeat |
| scaffold2231 |
59615 |
59742 |
+ |
Copia16-VV_I-int |
LTR/Copia |
| scaffold2231 |
63986 |
64007 |
+ |
(T)n |
Simple_repeat |
| scaffold2231 |
64707 |
64818 |
+ |
PL651 |
Unspecified |
| scaffold2231 |
64830 |
64883 |
+ |
HAT-14_Mad |
DNA/hAT-Tip100 |
| scaffold2231 |
65272 |
65388 |
+ |
RS275 |
Unspecified |
| scaffold2231 |
65689 |
65821 |
+ |
(ATTATTA)n |
Simple_repeat |
| scaffold2231 |
65689 |
65746 |
+ |
(ATTATTA)n |
Simple_repeat |
| scaffold2231 |
65729 |
65821 |
- |
RS11537 |
Unspecified |
| scaffold2231 |
65833 |
66562 |
+ |
MuDR-18_SBi_p4 |
DNA/MuLE-MuDR |
| scaffold2231 |
66652 |
67390 |
+ |
(A)n |
Simple_repeat |
| scaffold2231 |
67371 |
67390 |
+ |
(A)n |
Simple_repeat |
| scaffold2231 |
67542 |
67589 |
+ |
(AT)n |
Simple_repeat |
| scaffold2231 |
67653 |
67841 |
- |
RS3094 |
Unspecified |
| scaffold2231 |
67673 |
67863 |
- |
RS3094 |
Unspecified |
| scaffold2231 |
67774 |
67893 |
- |
RS3094 |
Unspecified |
| scaffold2231 |
67795 |
67893 |
- |
RS3094 |
Unspecified |
| scaffold2231 |
67971 |
68116 |
+ |
RS1714 |
Unspecified |
| scaffold2231 |
68049 |
68239 |
- |
RS3094 |
Unspecified |
| scaffold2231 |
68070 |
68280 |
- |
RS3094 |
Unspecified |
| scaffold2231 |
69018 |
69071 |
- |
RS1714 |
Unspecified |
| scaffold2231 |
69084 |
69110 |
+ |
(T)n |
Simple_repeat |
| scaffold2231 |
71087 |
71147 |
- |
RS11615 |
Unspecified |
| scaffold2231 |
71358 |
71424 |
+ |
(GCGCCTT)n |
Simple_repeat |
| scaffold2231 |
76920 |
76944 |
+ |
(GAAA)n |
Simple_repeat |
| scaffold2231 |
77175 |
77358 |
- |
RS5 |
Unspecified |
| scaffold2231 |
77384 |
77570 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold2231 |
78018 |
78053 |
+ |
(TATT)n |
Simple_repeat |
| scaffold2231 |
78918 |
79075 |
- |
RS12745 |
Unspecified |
| scaffold2231 |
79020 |
79097 |
+ |
RS10327 |
Unspecified |
| scaffold2231 |
79077 |
79304 |
+ |
RS98 |
Unspecified |
| scaffold2231 |
79806 |
79844 |
+ |
G-rich |
Low_complexity |
| scaffold2231 |
80474 |
80508 |
+ |
A-rich |
Low_complexity |
| scaffold2231 |
80635 |
80655 |
+ |
(TAA)n |
Simple_repeat |
| scaffold2231 |
80927 |
80970 |
+ |
(TT)n |
Simple_repeat |
| scaffold2231 |
85347 |
85381 |
+ |
(AATATGT)n |
Simple_repeat |
| scaffold2231 |
85468 |
85622 |
- |
RS6633 |
Unspecified |
| scaffold2231 |
85763 |
85888 |
- |
RS6169 |
Unspecified |
| scaffold2231 |
85912 |
86151 |
+ |
RS11322 |
Unspecified |
| scaffold2231 |
86340 |
86544 |
- |
RS5435 |
Unspecified |
| scaffold2231 |
98635 |
98652 |
+ |
(AAT)n |
Simple_repeat |
| scaffold2231 |
98751 |
98790 |
+ |
(ATTGATA)n |
Simple_repeat |
| scaffold2231 |
98857 |
99207 |
+ |
RS557 |
Unspecified |
| scaffold2231 |
99543 |
99677 |
- |
RS1626 |
Unspecified |
| scaffold2231 |
100506 |
100599 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold2231 |
100616 |
100699 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold2231 |
100898 |
100960 |
+ |
(ATTCA)n |
Simple_repeat |
| scaffold2231 |
100974 |
101006 |
+ |
(TTGT)n |
Simple_repeat |
| scaffold2231 |
101019 |
101110 |
+ |
(GTGGCG)n |
Simple_repeat |
| scaffold2231 |
101117 |
101137 |
+ |
(T)n |
Simple_repeat |
| scaffold2231 |
101177 |
101183 |
+ |
(GGTGGAT)n |
Simple_repeat |
| scaffold2231 |
101184 |
101243 |
+ |
(GGT)n |
Simple_repeat |
| scaffold2231 |
101244 |
101249 |
+ |
(GGTGGAT)n |
Simple_repeat |
| scaffold2231 |
101277 |
101422 |
+ |
(GGT)n |
Simple_repeat |
| scaffold2231 |
101426 |
101573 |
+ |
RS3521 |
Unspecified |
| scaffold2231 |
101974 |
102041 |
+ |
(CT)n |
Simple_repeat |
| scaffold2231 |
102052 |
102124 |
+ |
A-rich |
Low_complexity |
| scaffold2231 |
102300 |
102361 |
+ |
RS3521 |
Unspecified |
| scaffold2231 |
102762 |
102828 |
+ |
(CT)n |
Simple_repeat |
| scaffold2231 |
102842 |
102911 |
+ |
A-rich |
Low_complexity |
| scaffold2231 |
103734 |
104148 |
+ |
RS819 |
Unspecified |
| scaffold2231 |
104481 |
104534 |
+ |
GA-rich |
Low_complexity |
| scaffold2231 |
111887 |
111998 |
+ |
RS15103 |
Unspecified |
| scaffold2231 |
112009 |
112185 |
+ |
RS12165 |
Unspecified |
| scaffold2231 |
114865 |
114976 |
+ |
RS15103 |
Unspecified |
| scaffold2231 |
114987 |
115163 |
+ |
RS12165 |
Unspecified |
| scaffold2231 |
115451 |
115632 |
- |
RS79 |
Unspecified |
| scaffold2231 |
115669 |
115785 |
- |
RS3398 |
Unspecified |
| scaffold2231 |
116698 |
116760 |
+ |
(TAGAGTT)n |
Simple_repeat |
| scaffold2231 |
117898 |
117986 |
+ |
Copia-75_ST-I |
LTR/Copia |
| scaffold2231 |
120752 |
120773 |
+ |
(A)n |
Simple_repeat |
| scaffold2231 |
121853 |
122173 |
+ |
DNA3-9_Mad |
DNA/PIF-Harbinger |
| scaffold2231 |
122508 |
122532 |
+ |
(A)n |
Simple_repeat |
| scaffold2231 |
122590 |
122710 |
+ |
RS13542 |
Unspecified |
| scaffold2231 |
122899 |
122930 |
+ |
(A)n |
Simple_repeat |
| scaffold2231 |
126310 |
126332 |
+ |
(AAT)n |
Simple_repeat |
| scaffold2231 |
128918 |
128946 |
+ |
(ACA)n |
Simple_repeat |
| scaffold2231 |
129317 |
129322 |
+ |
(GGCGGT)n |
Simple_repeat |
| scaffold2231 |
129323 |
129353 |
+ |
(GGT)n |
Simple_repeat |
| scaffold2231 |
129354 |
129365 |
+ |
(GGCGGT)n |
Simple_repeat |
| scaffold2231 |
129480 |
129578 |
+ |
RS6521 |
Unspecified |
| scaffold2231 |
129678 |
129957 |
- |
RS1866 |
Unspecified |
| scaffold2231 |
130652 |
130697 |
+ |
G-rich |
Low_complexity |
| scaffold2231 |
131106 |
131264 |
+ |
RS4 |
Unspecified |
| scaffold2231 |
131412 |
131502 |
+ |
(CCCAC)n |
Simple_repeat |
| scaffold2231 |
131686 |
131771 |
+ |
RS84 |
Unspecified |
| scaffold2231 |
132755 |
132820 |
+ |
A-rich |
Low_complexity |
| scaffold2231 |
134932 |
134975 |
+ |
(A)n |
Simple_repeat |
| scaffold2231 |
136965 |
136988 |
+ |
(A)n |
Simple_repeat |
| scaffold2231 |
138852 |
138884 |
+ |
A-rich |
Low_complexity |
| scaffold2231 |
139217 |
139307 |
+ |
A-rich |
Low_complexity |
| scaffold2231 |
139407 |
139504 |
- |
RS2719 |
Unspecified |
| scaffold2231 |
139878 |
140125 |
+ |
RS822 |
Unspecified |
| scaffold2231 |
141060 |
141109 |
+ |
(ATGA)n |
Simple_repeat |
| scaffold2231 |
141428 |
141522 |
+ |
A-rich |
Low_complexity |
| scaffold2231 |
141542 |
141760 |
+ |
RS7244 |
Unspecified |
| scaffold2231 |
145659 |
145710 |
- |
RS318 |
Unspecified |
| scaffold2231 |
147280 |
147296 |
+ |
(T)n |
Simple_repeat |
| scaffold2231 |
147325 |
147516 |
+ |
COPMET_LTR |
LTR/Copia |
| scaffold2231 |
147802 |
147829 |
+ |
(T)n |
Simple_repeat |
| scaffold2231 |
154380 |
154422 |
+ |
(A)n |
Simple_repeat |
| scaffold2231 |
156029 |
156062 |
+ |
(CAA)n |
Simple_repeat |
| scaffold2231 |
157401 |
157606 |
+ |
RS28 |
Unspecified |
| scaffold2231 |
157884 |
157937 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold2231 |
158668 |
158781 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold2231 |
159139 |
159488 |
- |
RS5479 |
Unspecified |
| scaffold2231 |
159528 |
159591 |
+ |
(TAATT)n |
Simple_repeat |
| scaffold2231 |
159839 |
159876 |
+ |
(TTTAATT)n |
Simple_repeat |
| scaffold2231 |
160215 |
160394 |
- |
PL367 |
Unspecified |
| scaffold2231 |
162718 |
163005 |
+ |
PL472 |
Unspecified |
| scaffold2231 |
163283 |
163326 |
+ |
(ATAATA)n |
Simple_repeat |
| scaffold2231 |
164593 |
164602 |
+ |
(TATTTT)n |
Simple_repeat |
| scaffold2231 |
164603 |
164638 |
+ |
(T)n |
Simple_repeat |
| scaffold2231 |
164796 |
164813 |
+ |
(A)n |
Simple_repeat |
| scaffold2231 |
167067 |
167102 |
+ |
(CCCTCA)n |
Simple_repeat |
| scaffold2231 |
167394 |
167466 |
+ |
RS1323 |
Unspecified |
| scaffold2231 |
167580 |
167685 |
+ |
RS8120 |
Unspecified |
| scaffold2231 |
167786 |
167957 |
- |
RS3096 |
Unspecified |
| scaffold2231 |
168536 |
168639 |
- |
RS5544 |
Unspecified |
| scaffold2231 |
168624 |
168886 |
- |
RS3048 |
Unspecified |
| scaffold2231 |
168778 |
168982 |
+ |
RS4668 |
Unspecified |
| scaffold2231 |
169447 |
169549 |
+ |
RS7616 |
Unspecified |
| scaffold2231 |
169641 |
169801 |
+ |
RS6280 |
Unspecified |
| scaffold2231 |
169901 |
170228 |
+ |
RS10781 |
Unspecified |
| scaffold2231 |
172073 |
172095 |
+ |
(T)n |
Simple_repeat |
| scaffold2231 |
172436 |
172699 |
+ |
RS1 |
Unspecified |
| scaffold2231 |
173376 |
173407 |
+ |
(AAGACG)n |
Simple_repeat |
| scaffold2231 |
173411 |
173495 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold2231 |
173496 |
173596 |
+ |
A-rich |
Low_complexity |
| scaffold2231 |
173597 |
173602 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold2231 |
173748 |
173865 |
- |
RS10164 |
Unspecified |
| scaffold2231 |
173866 |
173932 |
- |
RS10164 |
Unspecified |
| scaffold2231 |
174004 |
174051 |
+ |
(ATT)n |
Simple_repeat |