scaffold227 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold227 |
892 |
1454 |
+ |
RS616 |
Unspecified |
| scaffold227 |
2250 |
2537 |
+ |
RS4251 |
Unspecified |
| scaffold227 |
2534 |
4015 |
+ |
Gypsy-53_GM-I |
LTR/Gypsy |
| scaffold227 |
4359 |
5319 |
+ |
Gypsy-I_MT |
LTR/Gypsy |
| scaffold227 |
5375 |
5391 |
+ |
(A)n |
Simple_repeat |
| scaffold227 |
5408 |
5518 |
+ |
RS83 |
Unspecified |
| scaffold227 |
6084 |
6163 |
+ |
(AATAC)n |
Simple_repeat |
| scaffold227 |
6164 |
6229 |
+ |
(AAT)n |
Simple_repeat |
| scaffold227 |
6230 |
6237 |
+ |
(AATAC)n |
Simple_repeat |
| scaffold227 |
6470 |
6974 |
+ |
PL913 |
Unspecified |
| scaffold227 |
6887 |
7286 |
- |
RS7333 |
Unspecified |
| scaffold227 |
7775 |
7806 |
+ |
A-rich |
Low_complexity |
| scaffold227 |
7775 |
7873 |
+ |
A-rich |
Low_complexity |
| scaffold227 |
7797 |
7873 |
- |
RS8442 |
Unspecified |
| scaffold227 |
8180 |
8220 |
+ |
(T)n |
Simple_repeat |
| scaffold227 |
8469 |
8569 |
+ |
A-rich |
Low_complexity |
| scaffold227 |
9137 |
10450 |
- |
RS309 |
Unspecified |
| scaffold227 |
10725 |
11032 |
- |
PL833 |
Unspecified |
| scaffold227 |
11984 |
12064 |
+ |
A-rich |
Low_complexity |
| scaffold227 |
13158 |
13363 |
+ |
(CCTCAG)n |
Simple_repeat |
| scaffold227 |
13158 |
14191 |
+ |
(CCTCAG)n |
Simple_repeat |
| scaffold227 |
13303 |
14191 |
- |
RS67 |
Unspecified |
| scaffold227 |
14807 |
14842 |
+ |
A-rich |
Low_complexity |
| scaffold227 |
15209 |
15353 |
+ |
(AGC)n |
Simple_repeat |
| scaffold227 |
15351 |
15390 |
+ |
(CAGAATA)n |
Simple_repeat |
| scaffold227 |
15474 |
15507 |
+ |
RS6769 |
Unspecified |
| scaffold227 |
15525 |
15812 |
+ |
RS6769 |
Unspecified |
| scaffold227 |
16618 |
16650 |
+ |
(AATTC)n |
Simple_repeat |
| scaffold227 |
16899 |
16940 |
+ |
(T)n |
Simple_repeat |
| scaffold227 |
16941 |
16973 |
+ |
(TATT)n |
Simple_repeat |
| scaffold227 |
16989 |
17195 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold227 |
17343 |
17531 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold227 |
17952 |
19749 |
+ |
RS108 |
Unspecified |
| scaffold227 |
21019 |
21781 |
- |
RS398 |
Unspecified |
| scaffold227 |
21993 |
22056 |
+ |
(AGCACGA)n |
Simple_repeat |
| scaffold227 |
22293 |
22315 |
+ |
(C)n |
Simple_repeat |
| scaffold227 |
23981 |
24234 |
- |
PL670 |
Unspecified |
| scaffold227 |
24903 |
24974 |
+ |
(TGTTGTT)n |
Simple_repeat |
| scaffold227 |
25344 |
25397 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold227 |
25641 |
25658 |
+ |
(T)n |
Simple_repeat |
| scaffold227 |
26891 |
28501 |
+ |
LINE |
LINE(TransposonPSI) |
| scaffold227 |
29941 |
30233 |
- |
PL171 |
Unspecified |
| scaffold227 |
30624 |
31204 |
- |
PL470 |
Unspecified |
| scaffold227 |
32397 |
33136 |
- |
Copia-82_GM-I |
LTR/Copia |
| scaffold227 |
33158 |
33308 |
+ |
(CCGGAT)n |
Simple_repeat |
| scaffold227 |
33313 |
33339 |
+ |
(T)n |
Simple_repeat |
| scaffold227 |
33669 |
33704 |
+ |
(T)n |
Simple_repeat |
| scaffold227 |
33845 |
34727 |
- |
ATCopia22I |
LTR/Copia |
| scaffold227 |
35067 |
35125 |
- |
Copia-32-I_VV |
LTR/Copia |
| scaffold227 |
35126 |
35416 |
- |
LTR-1_SBi-LTR |
LTR |
| scaffold227 |
35615 |
35905 |
- |
LTR2-ZM_LTR |
LTR |
| scaffold227 |
35961 |
36950 |
- |
Copia-32-I_VV |
LTR/Copia |
| scaffold227 |
37670 |
37676 |
+ |
(TTTACTT)n |
Simple_repeat |
| scaffold227 |
37677 |
37725 |
+ |
(TTTT)n |
Simple_repeat |
| scaffold227 |
38434 |
38456 |
+ |
(CAA)n |
Simple_repeat |
| scaffold227 |
38783 |
38826 |
+ |
(GAATT)n |
Simple_repeat |
| scaffold227 |
39104 |
39129 |
+ |
(CCAATT)n |
Simple_repeat |
| scaffold227 |
39322 |
39376 |
+ |
A-rich |
Low_complexity |
| scaffold227 |
39713 |
39767 |
+ |
(AAGTAGA)n |
Simple_repeat |
| scaffold227 |
40129 |
40204 |
+ |
(TTCAGAAAAC)n |
Simple_repeat |
| scaffold227 |
40211 |
40342 |
+ |
(AAT)n |
Simple_repeat |
| scaffold227 |
40485 |
40568 |
+ |
(ATT)n |
Simple_repeat |
| scaffold227 |
42499 |
42605 |
+ |
(GAT)n |
Simple_repeat |
| scaffold227 |
44100 |
44144 |
+ |
(TTATG)n |
Simple_repeat |
| scaffold227 |
44488 |
45666 |
- |
Atlantys1_I-int |
LTR/Gypsy |
| scaffold227 |
46219 |
48165 |
- |
gypsy |
gypsy(TransposonPSI) |
| scaffold227 |
46272 |
47598 |
- |
Atlantys1_I-int |
LTR/Gypsy |
| scaffold227 |
50873 |
51673 |
- |
L1-1_PTr |
LINE/L1 |
| scaffold227 |
51871 |
51946 |
- |
L1-1_PTr |
LINE/L1 |
| scaffold227 |
52273 |
52341 |
+ |
Gypsy9-PTR_I-int |
LTR/Gypsy |
| scaffold227 |
52863 |
52986 |
+ |
EnSpm-11_STu |
DNA/CMC-EnSpm |
| scaffold227 |
54341 |
54383 |
+ |
(TTA)n |
Simple_repeat |
| scaffold227 |
54384 |
54432 |
+ |
(AAT)n |
Simple_repeat |
| scaffold227 |
54433 |
54614 |
+ |
(TTCAGAAAAC)n |
Simple_repeat |
| scaffold227 |
55544 |
55787 |
- |
RS4 |
Unspecified |
| scaffold227 |
57193 |
57276 |
+ |
(ATT)n |
Simple_repeat |
| scaffold227 |
59831 |
59884 |
+ |
(TATTCTA)n |
Simple_repeat |
| scaffold227 |
60189 |
60231 |
+ |
(T)n |
Simple_repeat |
| scaffold227 |
60721 |
60754 |
+ |
(AATT)n |
Simple_repeat |
| scaffold227 |
60793 |
60798 |
+ |
(ATTTTTT)n |
Simple_repeat |
| scaffold227 |
60799 |
60840 |
+ |
(T)n |
Simple_repeat |
| scaffold227 |
60841 |
60851 |
+ |
(ATTTTTT)n |
Simple_repeat |
| scaffold227 |
60857 |
60956 |
+ |
(GGC)n |
Simple_repeat |
| scaffold227 |
60957 |
60965 |
+ |
(TGGCGG)n |
Simple_repeat |
| scaffold227 |
60970 |
60997 |
+ |
(TTTGT)n |
Simple_repeat |
| scaffold227 |
61023 |
61121 |
+ |
G-rich |
Low_complexity |
| scaffold227 |
61169 |
61201 |
+ |
(T)n |
Simple_repeat |
| scaffold227 |
61394 |
61427 |
+ |
GA-rich |
Low_complexity |
| scaffold227 |
61717 |
61748 |
+ |
(A)n |
Simple_repeat |
| scaffold227 |
62530 |
63074 |
+ |
PL753 |
Unspecified |
| scaffold227 |
63465 |
63483 |
+ |
(A)n |
Simple_repeat |
| scaffold227 |
64761 |
64789 |
+ |
A-rich |
Low_complexity |
| scaffold227 |
65122 |
65165 |
+ |
(T)n |
Simple_repeat |
| scaffold227 |
65271 |
65308 |
+ |
(TTTTAA)n |
Simple_repeat |
| scaffold227 |
66468 |
66732 |
- |
RS82 |
Unspecified |
| scaffold227 |
67035 |
67063 |
+ |
A-rich |
Low_complexity |
| scaffold227 |
67595 |
67750 |
+ |
SHACOP15_LTR_MT |
LTR/Copia |
| scaffold227 |
68078 |
70462 |
- |
RS254 |
Unspecified |
| scaffold227 |
70468 |
70590 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold227 |
70565 |
70647 |
- |
HAT-10_Mad |
DNA/hAT-Ac |
| scaffold227 |
70906 |
71431 |
+ |
RS3814 |
Unspecified |
| scaffold227 |
71429 |
71460 |
+ |
(TGTA)n |
Simple_repeat |
| scaffold227 |
72799 |
72841 |
+ |
(TTTCGGT)n |
Simple_repeat |
| scaffold227 |
73452 |
73511 |
+ |
(TGCTTT)n |
Simple_repeat |
| scaffold227 |
76091 |
76176 |
- |
LINE1-52_ZM |
LINE/L1 |
| scaffold227 |
76386 |
76428 |
- |
LINE1-46_SBi |
LINE/L1 |
| scaffold227 |
76578 |
76644 |
- |
LINE1I_MT |
LINE/L1 |
| scaffold227 |
76696 |
76736 |
+ |
RS67 |
Unspecified |
| scaffold227 |
77620 |
77662 |
+ |
(GTCTT)n |
Simple_repeat |
| scaffold227 |
78105 |
78131 |
+ |
Gypsy-16_Mad-I |
LTR/Gypsy |
| scaffold227 |
78138 |
78176 |
+ |
(TTTG)n |
Simple_repeat |
| scaffold227 |
78177 |
78184 |
+ |
(CTTTGTT)n |
Simple_repeat |
| scaffold227 |
78643 |
78690 |
+ |
MEGY-I_MT |
LTR/Gypsy |
| scaffold227 |
78751 |
78922 |
+ |
PIGY-LTR_PS |
LTR/Gypsy |
| scaffold227 |
79157 |
79798 |
- |
RS1207 |
Unspecified |
| scaffold227 |
79252 |
79915 |
- |
RS661 |
Unspecified |
| scaffold227 |
79456 |
80047 |
- |
RS1930 |
Unspecified |
| scaffold227 |
80098 |
80772 |
+ |
MEGY-I_MT |
LTR/Gypsy |
| scaffold227 |
81374 |
81457 |
- |
Copia15-VV_I-int |
LTR/Copia |
| scaffold227 |
82145 |
82211 |
+ |
(AACA)n |
Simple_repeat |
| scaffold227 |
82843 |
82890 |
+ |
OPHELIA3_HV |
LTR/Gypsy |
| scaffold227 |
83811 |
83853 |
+ |
(GTCTT)n |
Simple_repeat |
| scaffold227 |
85514 |
85810 |
- |
gypsy |
gypsy(TransposonPSI) |
| scaffold227 |
85588 |
85654 |
+ |
(CTG)n |
Simple_repeat |
| scaffold227 |
85655 |
85723 |
+ |
(AGGCTG)n |
Simple_repeat |
| scaffold227 |
86615 |
86659 |
+ |
(TTGTT)n |
Simple_repeat |
| scaffold227 |
86853 |
86941 |
+ |
(TTGTGT)n |
Simple_repeat |
| scaffold227 |
88171 |
88760 |
- |
RS10815 |
Unspecified |
| scaffold227 |
88745 |
89254 |
+ |
PL57 |
Unspecified |
| scaffold227 |
90917 |
90964 |
- |
Gypsy-10_Pru-LTR |
LTR/Gypsy |
| scaffold227 |
91015 |
91106 |
- |
RS83 |
Unspecified |
| scaffold227 |
91132 |
92258 |
- |
Gypsy-53_GM-I |
LTR/Gypsy |
| scaffold227 |
228754 |
228819 |
+ |
(TGAT)n |
Simple_repeat |