scaffold2296 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold2296 |
1 |
1943 |
+ |
RS203 |
Unspecified |
| scaffold2296 |
1945 |
2306 |
+ |
RS2390 |
Unspecified |
| scaffold2296 |
3773 |
3814 |
+ |
(CAGC)n |
Simple_repeat |
| scaffold2296 |
4211 |
4529 |
+ |
RS4066 |
Unspecified |
| scaffold2296 |
4221 |
4472 |
- |
RS3108 |
Unspecified |
| scaffold2296 |
5272 |
5824 |
+ |
RS2390 |
Unspecified |
| scaffold2296 |
6447 |
6555 |
+ |
ZhAT8_ZM |
DNA/hAT-Ac |
| scaffold2296 |
6474 |
6585 |
+ |
ATCopia27_I-int |
LTR/Copia |
| scaffold2296 |
6852 |
7215 |
+ |
Copia-85_ST-I |
LTR/Copia |
| scaffold2296 |
6852 |
7080 |
+ |
Copia-85_ST-I |
LTR/Copia |
| scaffold2296 |
7037 |
7215 |
- |
RS3561 |
Unspecified |
| scaffold2296 |
7519 |
7568 |
+ |
A-rich |
Low_complexity |
| scaffold2296 |
8345 |
8369 |
+ |
(T)n |
Simple_repeat |
| scaffold2296 |
8692 |
8819 |
+ |
TRAMET1 |
DNA/TcMar-Stowaway |
| scaffold2296 |
8853 |
9095 |
- |
RS15131 |
Unspecified |
| scaffold2296 |
10655 |
10707 |
+ |
A-rich |
Low_complexity |
| scaffold2296 |
10832 |
10877 |
+ |
(TATCTA)n |
Simple_repeat |
| scaffold2296 |
10972 |
11023 |
+ |
(ATAATAA)n |
Simple_repeat |
| scaffold2296 |
11292 |
11661 |
- |
RS3569 |
Unspecified |
| scaffold2296 |
11492 |
11826 |
- |
RS520 |
Unspecified |
| scaffold2296 |
11757 |
11976 |
+ |
RS13405 |
Unspecified |
| scaffold2296 |
12000 |
12132 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold2296 |
16159 |
16432 |
+ |
RS3651 |
Unspecified |
| scaffold2296 |
23345 |
23365 |
+ |
(A)n |
Simple_repeat |
| scaffold2296 |
32220 |
32252 |
+ |
(GGC)n |
Simple_repeat |
| scaffold2296 |
32253 |
32260 |
+ |
(GAGGCG)n |
Simple_repeat |
| scaffold2296 |
32388 |
32411 |
+ |
(GGA)n |
Simple_repeat |
| scaffold2296 |
32455 |
32523 |
+ |
(GGT)n |
Simple_repeat |
| scaffold2296 |
32872 |
32961 |
+ |
(TTCAA)n |
Simple_repeat |
| scaffold2296 |
33223 |
33326 |
+ |
(AATTG)n |
Simple_repeat |
| scaffold2296 |
33662 |
33930 |
+ |
RS17600 |
Unspecified |
| scaffold2296 |
34997 |
35734 |
+ |
PL166 |
Unspecified |
| scaffold2296 |
37873 |
38529 |
+ |
RS75 |
Unspecified |
| scaffold2296 |
37944 |
38824 |
+ |
PL562 |
Unspecified |
| scaffold2296 |
39707 |
40494 |
- |
RS756 |
Unspecified |
| scaffold2296 |
41466 |
41507 |
+ |
(AATATATA)n |
Simple_repeat |
| scaffold2296 |
41838 |
42006 |
- |
ATENSPM1A |
DNA/CMC-EnSpm |
| scaffold2296 |
46557 |
46582 |
+ |
(AG)n |
Simple_repeat |
| scaffold2296 |
46670 |
46700 |
+ |
(AATA)n |
Simple_repeat |
| scaffold2296 |
46857 |
47247 |
+ |
RS1560 |
Unspecified |
| scaffold2296 |
47372 |
48374 |
+ |
PL326 |
Unspecified |
| scaffold2296 |
48545 |
48579 |
+ |
(TTTCAA)n |
Simple_repeat |
| scaffold2296 |
48657 |
48872 |
+ |
RS11533 |
Unspecified |
| scaffold2296 |
49216 |
49249 |
+ |
A-rich |
Low_complexity |
| scaffold2296 |
49353 |
49379 |
+ |
(TTTAT)n |
Simple_repeat |
| scaffold2296 |
49958 |
50075 |
- |
PL608 |
Unspecified |
| scaffold2296 |
50786 |
51013 |
+ |
LTR-1_SBi-LTR |
LTR |
| scaffold2296 |
51286 |
51421 |
+ |
LTR2-ZM_LTR |
LTR |
| scaffold2296 |
52151 |
52354 |
+ |
RS3094 |
Unspecified |
| scaffold2296 |
52185 |
52374 |
+ |
RS3094 |
Unspecified |
| scaffold2296 |
52456 |
52601 |
+ |
RS3094 |
Unspecified |
| scaffold2296 |
52456 |
52627 |
+ |
RS3094 |
Unspecified |
| scaffold2296 |
52920 |
53033 |
+ |
A-rich |
Low_complexity |
| scaffold2296 |
53551 |
53755 |
+ |
RS2126 |
Unspecified |
| scaffold2296 |
54100 |
54133 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold2296 |
54959 |
54982 |
+ |
(T)n |
Simple_repeat |
| scaffold2296 |
55223 |
55247 |
+ |
(A)n |
Simple_repeat |
| scaffold2296 |
57242 |
57266 |
+ |
(T)n |
Simple_repeat |
| scaffold2296 |
58741 |
58788 |
+ |
(AGAACTA)n |
Simple_repeat |
| scaffold2296 |
59835 |
59864 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold2296 |
61838 |
61861 |
+ |
(AAT)n |
Simple_repeat |
| scaffold2296 |
63926 |
63996 |
+ |
(CAGCT)n |
Simple_repeat |
| scaffold2296 |
64014 |
64082 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold2296 |
64534 |
64795 |
+ |
L1-1_STu |
LINE/L1 |
| scaffold2296 |
64855 |
65375 |
+ |
RS72 |
Unspecified |
| scaffold2296 |
65366 |
65745 |
+ |
RS8 |
Unspecified |
| scaffold2296 |
65791 |
65942 |
- |
PL114 |
Unspecified |
| scaffold2296 |
65810 |
66248 |
+ |
RS724 |
Unspecified |
| scaffold2296 |
66248 |
66441 |
+ |
RS58 |
Unspecified |
| scaffold2296 |
66271 |
66911 |
+ |
RS724 |
Unspecified |
| scaffold2296 |
67192 |
67226 |
+ |
(TTTTC)n |
Simple_repeat |
| scaffold2296 |
67474 |
67517 |
+ |
A-rich |
Low_complexity |
| scaffold2296 |
67708 |
67738 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold2296 |
67999 |
68131 |
- |
RS8153 |
Unspecified |
| scaffold2296 |
68105 |
68189 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold2296 |
68332 |
68614 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold2296 |
69003 |
69071 |
+ |
(TTTTTGC)n |
Simple_repeat |
| scaffold2296 |
69059 |
69075 |
+ |
(T)n |
Simple_repeat |
| scaffold2296 |
69094 |
69160 |
+ |
(TTTTAAT)n |
Simple_repeat |
| scaffold2296 |
69421 |
69492 |
+ |
(AAT)n |
Simple_repeat |
| scaffold2296 |
69630 |
69664 |
+ |
(AAT)n |
Simple_repeat |
| scaffold2296 |
70678 |
70688 |
- |
ATCOPIN_LTR |
LTR |
| scaffold2296 |
70689 |
70898 |
+ |
LTR-1_SBi-LTR |
LTR |
| scaffold2296 |
70689 |
70775 |
+ |
LTR-1_SBi-LTR |
LTR |
| scaffold2296 |
70743 |
70898 |
+ |
PL136 |
Unspecified |
| scaffold2296 |
70769 |
70926 |
- |
PL70 |
Unspecified |
| scaffold2296 |
71117 |
71240 |
+ |
LTR2-ZM_LTR |
LTR |
| scaffold2296 |
71243 |
71451 |
+ |
RS12432 |
Unspecified |
| scaffold2296 |
71585 |
71711 |
+ |
RS12641 |
Unspecified |
| scaffold2296 |
72205 |
72234 |
+ |
(ATTAT)n |
Simple_repeat |
| scaffold2296 |
72514 |
72542 |
+ |
(T)n |
Simple_repeat |
| scaffold2296 |
72758 |
72890 |
- |
RS8153 |
Unspecified |
| scaffold2296 |
73016 |
73043 |
+ |
(A)n |
Simple_repeat |
| scaffold2296 |
73045 |
73087 |
+ |
(ATCAA)n |
Simple_repeat |
| scaffold2296 |
73523 |
73665 |
- |
RS31 |
Unspecified |
| scaffold2296 |
73540 |
73687 |
+ |
RS31 |
Unspecified |
| scaffold2296 |
74061 |
74218 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold2296 |
74353 |
74562 |
+ |
RS12432 |
Unspecified |
| scaffold2296 |
74685 |
74811 |
+ |
RS12641 |
Unspecified |
| scaffold2296 |
75381 |
75418 |
+ |
(TTTTGA)n |
Simple_repeat |
| scaffold2296 |
80927 |
81021 |
+ |
(AGGTGG)n |
Simple_repeat |
| scaffold2296 |
86518 |
86551 |
+ |
(TTAATA)n |
Simple_repeat |
| scaffold2296 |
87854 |
88185 |
+ |
Copia35-PTR_I-int |
LTR/Copia |
| scaffold2296 |
88339 |
88426 |
+ |
Copia35-PTR_I-int |
LTR/Copia |
| scaffold2296 |
88700 |
88749 |
+ |
Copia35-PTR_I-int |
LTR/Copia |
| scaffold2296 |
89054 |
89158 |
+ |
Copia35-PTR_I-int |
LTR/Copia |
| scaffold2296 |
89390 |
89557 |
+ |
RS172 |
Unspecified |
| scaffold2296 |
89558 |
89660 |
- |
PL812 |
Unspecified |
| scaffold2296 |
90214 |
90770 |
- |
RS514 |
Unspecified |
| scaffold2296 |
90977 |
91255 |
+ |
RS4686 |
Unspecified |
| scaffold2296 |
91128 |
91307 |
- |
PL785 |
Unspecified |
| scaffold2296 |
94284 |
94643 |
+ |
PL139 |
Unspecified |
| scaffold2296 |
94705 |
94841 |
+ |
EnSpm-5_Mad |
DNA/CMC-EnSpm |
| scaffold2296 |
95248 |
95340 |
+ |
RS715 |
Unspecified |
| scaffold2296 |
96207 |
96243 |
+ |
(TTTC)n |
Simple_repeat |
| scaffold2296 |
96515 |
96535 |
+ |
(AAAT)n |
Simple_repeat |
| scaffold2296 |
96806 |
96973 |
+ |
(ATATAAT)n |
Simple_repeat |
| scaffold2296 |
96916 |
96973 |
+ |
(ATATAAT)n |
Simple_repeat |
| scaffold2296 |
97203 |
97231 |
+ |
(AGTCTG)n |
Simple_repeat |
| scaffold2296 |
97370 |
97727 |
- |
RS5831 |
Unspecified |
| scaffold2296 |
100574 |
100608 |
+ |
(AAT)n |
Simple_repeat |
| scaffold2296 |
100609 |
100617 |
+ |
(ATAAATA)n |
Simple_repeat |
| scaffold2296 |
100728 |
100760 |
+ |
(ATTA)n |
Simple_repeat |
| scaffold2296 |
100903 |
101014 |
- |
RS16911 |
Unspecified |
| scaffold2296 |
100915 |
101007 |
+ |
RS4475 |
Unspecified |
| scaffold2296 |
101804 |
102029 |
- |
RS17079 |
Unspecified |
| scaffold2296 |
102079 |
102111 |
+ |
(AAT)n |
Simple_repeat |
| scaffold2296 |
102494 |
102692 |
- |
RS458 |
Unspecified |
| scaffold2296 |
102677 |
102803 |
+ |
RS458 |
Unspecified |
| scaffold2296 |
102938 |
103225 |
+ |
RS1919 |
Unspecified |
| scaffold2296 |
103224 |
103479 |
- |
RS1 |
Unspecified |
| scaffold2296 |
103382 |
103494 |
+ |
RS15138 |
Unspecified |
| scaffold2296 |
103812 |
103850 |
+ |
(A)n |
Simple_repeat |
| scaffold2296 |
103812 |
104065 |
+ |
(A)n |
Simple_repeat |
| scaffold2296 |
103846 |
104065 |
- |
RS4164 |
Unspecified |
| scaffold2296 |
103872 |
104065 |
- |
RS4164 |
Unspecified |
| scaffold2296 |
104478 |
104646 |
- |
RS3687 |
Unspecified |
| scaffold2296 |
104630 |
104676 |
- |
RS3687 |
Unspecified |
| scaffold2296 |
104888 |
104998 |
- |
RS998 |
Unspecified |
| scaffold2296 |
104972 |
105100 |
- |
RS15184 |
Unspecified |
| scaffold2296 |
105333 |
105385 |
+ |
(CTCTCA)n |
Simple_repeat |
| scaffold2296 |
106055 |
106142 |
- |
RS2090 |
Unspecified |
| scaffold2296 |
107244 |
107698 |
+ |
PL2 |
Unspecified |
| scaffold2296 |
107724 |
107879 |
+ |
PL301 |
Unspecified |
| scaffold2296 |
107909 |
108006 |
+ |
(GAACT)n |
Simple_repeat |
| scaffold2296 |
108037 |
108072 |
+ |
(TAT)n |
Simple_repeat |
| scaffold2296 |
109076 |
109347 |
+ |
PL301 |
Unspecified |
| scaffold2296 |
110363 |
110512 |
- |
RS5561 |
Unspecified |
| scaffold2296 |
110718 |
110809 |
+ |
(T)n |
Simple_repeat |
| scaffold2296 |
111244 |
111514 |
- |
RS1 |
Unspecified |
| scaffold2296 |
111420 |
111534 |
+ |
RS16358 |
Unspecified |
| scaffold2296 |
111600 |
111633 |
+ |
A-rich |
Low_complexity |
| scaffold2296 |
111672 |
111844 |
+ |
RS14475 |
Unspecified |
| scaffold2296 |
111933 |
111966 |
+ |
A-rich |
Low_complexity |
| scaffold2296 |
112169 |
112232 |
+ |
A-rich |
Low_complexity |
| scaffold2296 |
112364 |
112395 |
+ |
(T)n |
Simple_repeat |
| scaffold2296 |
112495 |
112524 |
+ |
(T)n |
Simple_repeat |
| scaffold2296 |
112798 |
112854 |
+ |
(ATATTT)n |
Simple_repeat |
| scaffold2296 |
114896 |
114974 |
+ |
(CCGGAT)n |
Simple_repeat |
| scaffold2296 |
115015 |
115049 |
+ |
G-rich |
Low_complexity |
| scaffold2296 |
115385 |
115436 |
+ |
(TATTT)n |
Simple_repeat |
| scaffold2296 |
115548 |
115650 |
+ |
RS17136 |
Unspecified |
| scaffold2296 |
115632 |
115703 |
+ |
PL655 |
Unspecified |
| scaffold2296 |
116010 |
116053 |
+ |
(TA)n |
Simple_repeat |
| scaffold2296 |
116212 |
116244 |
+ |
(AATTT)n |
Simple_repeat |
| scaffold2296 |
116554 |
116616 |
+ |
(TATTTT)n |
Simple_repeat |
| scaffold2296 |
116634 |
116814 |
- |
RS4067 |
Unspecified |
| scaffold2296 |
117075 |
117159 |
+ |
(A)n |
Simple_repeat |
| scaffold2296 |
117159 |
117204 |
+ |
(ATGAAGT)n |
Simple_repeat |
| scaffold2296 |
117292 |
117402 |
- |
RS2734 |
Unspecified |
| scaffold2296 |
117607 |
117664 |
+ |
BvL1-2 |
LINE/L1 |
| scaffold2296 |
121875 |
121925 |
+ |
A-rich |
Low_complexity |
| scaffold2296 |
121932 |
121987 |
+ |
(CCCACC)n |
Simple_repeat |
| scaffold2296 |
122058 |
122778 |
+ |
RS1496 |
Unspecified |
| scaffold2296 |
123827 |
123844 |
+ |
(A)n |
Simple_repeat |
| scaffold2296 |
124001 |
124069 |
+ |
(TTT)n |
Simple_repeat |
| scaffold2296 |
124724 |
124772 |
+ |
(CGAGC)n |
Simple_repeat |
| scaffold2296 |
124801 |
124907 |
- |
PL834 |
Unspecified |
| scaffold2296 |
125181 |
125754 |
- |
RS446 |
Unspecified |
| scaffold2296 |
125830 |
125858 |
+ |
(T)n |
Simple_repeat |
| scaffold2296 |
127553 |
127607 |
+ |
(AGACCC)n |
Simple_repeat |
| scaffold2296 |
127647 |
127676 |
+ |
G-rich |
Low_complexity |
| scaffold2296 |
128006 |
128032 |
+ |
G-rich |
Low_complexity |
| scaffold2296 |
128103 |
128168 |
+ |
A-rich |
Low_complexity |
| scaffold2296 |
128215 |
128238 |
+ |
(A)n |
Simple_repeat |
| scaffold2296 |
128313 |
128373 |
+ |
(CCA)n |
Simple_repeat |
| scaffold2296 |
128490 |
128820 |
- |
RS2543 |
Unspecified |
| scaffold2296 |
128820 |
128934 |
+ |
RS4600 |
Unspecified |
| scaffold2296 |
128821 |
128948 |
- |
RS1599 |
Unspecified |
| scaffold2296 |
128835 |
129111 |
- |
RS3785 |
Unspecified |
| scaffold2296 |
129113 |
129425 |
+ |
RS8921 |
Unspecified |
| scaffold2296 |
129473 |
129595 |
+ |
A-rich |
Low_complexity |
| scaffold2296 |
129596 |
129618 |
+ |
(A)n |
Simple_repeat |
| scaffold2296 |
129634 |
129795 |
- |
RS7158 |
Unspecified |
| scaffold2296 |
130002 |
130066 |
+ |
(A)n |
Simple_repeat |
| scaffold2296 |
130199 |
130269 |
+ |
(GTTTTTA)n |
Simple_repeat |
| scaffold2296 |
133980 |
134090 |
- |
RS637 |
Unspecified |
| scaffold2296 |
134159 |
134196 |
+ |
(AATTATA)n |
Simple_repeat |
| scaffold2296 |
134427 |
134472 |
+ |
(T)n |
Simple_repeat |
| scaffold2296 |
134473 |
134492 |
+ |
(AT)n |
Simple_repeat |
| scaffold2296 |
134711 |
135013 |
- |
RS1746 |
Unspecified |
| scaffold2296 |
135040 |
135299 |
- |
RS1364 |
Unspecified |
| scaffold2296 |
135405 |
135645 |
+ |
RS9173 |
Unspecified |
| scaffold2296 |
135666 |
135854 |
- |
RS8391 |
Unspecified |
| scaffold2296 |
136119 |
136243 |
- |
RS8616 |
Unspecified |
| scaffold2296 |
136267 |
136427 |
+ |
RS1364 |
Unspecified |
| scaffold2296 |
136451 |
136578 |
- |
RS14169 |
Unspecified |
| scaffold2296 |
137053 |
137205 |
+ |
RS369 |
Unspecified |
| scaffold2296 |
137300 |
137333 |
+ |
A-rich |
Low_complexity |
| scaffold2296 |
137421 |
137461 |
+ |
(TAT)n |
Simple_repeat |
| scaffold2296 |
137782 |
137963 |
+ |
RS79 |
Unspecified |
| scaffold2296 |
138285 |
138319 |
+ |
(TAATGA)n |
Simple_repeat |
| scaffold2296 |
140162 |
140222 |
+ |
A-rich |
Low_complexity |
| scaffold2296 |
140852 |
140910 |
+ |
(CAT)n |
Simple_repeat |
| scaffold2296 |
141042 |
141058 |
+ |
(AGG)n |
Simple_repeat |
| scaffold2296 |
141113 |
141225 |
- |
RS8087 |
Unspecified |
| scaffold2296 |
141294 |
141329 |
+ |
(AGA)n |
Simple_repeat |
| scaffold2296 |
143044 |
143275 |
- |
RS18 |
Unspecified |
| scaffold2296 |
143756 |
143807 |
+ |
A-rich |
Low_complexity |
| scaffold2296 |
146887 |
146941 |
+ |
(TTTATA)n |
Simple_repeat |
| scaffold2296 |
147507 |
147541 |
+ |
(TACCCG)n |
Simple_repeat |
| scaffold2296 |
147999 |
148041 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold2296 |
149388 |
149564 |
+ |
RS1 |
Unspecified |
| scaffold2296 |
149723 |
149827 |
+ |
RS16358 |
Unspecified |
| scaffold2296 |
149948 |
150150 |
+ |
RS28 |
Unspecified |
| scaffold2296 |
150648 |
150772 |
+ |
(CAGTT)n |
Simple_repeat |