scaffold25523 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold25523 |
530 |
551 |
+ |
(A)n |
Simple_repeat |
| scaffold25523 |
817 |
845 |
+ |
(A)n |
Simple_repeat |
| scaffold25523 |
817 |
1636 |
+ |
(A)n |
Simple_repeat |
| scaffold25523 |
842 |
1636 |
+ |
RS192 |
Unspecified |
| scaffold25523 |
1604 |
1692 |
+ |
RS192 |
Unspecified |
| scaffold25523 |
1660 |
1782 |
+ |
RS192 |
Unspecified |
| scaffold25523 |
1716 |
1844 |
+ |
RS192 |
Unspecified |
| scaffold25523 |
1780 |
1907 |
+ |
RS192 |
Unspecified |
| scaffold25523 |
2432 |
2499 |
+ |
Gypsy-10_Pru-LTR |
LTR/Gypsy |
| scaffold25523 |
2810 |
3000 |
- |
RS6985 |
Unspecified |
| scaffold25523 |
3154 |
3204 |
+ |
A-rich |
Low_complexity |
| scaffold25523 |
3717 |
3810 |
+ |
(ACA)n |
Simple_repeat |
| scaffold25523 |
4176 |
4238 |
+ |
(CACAA)n |
Simple_repeat |
| scaffold25523 |
4845 |
5297 |
+ |
RS247 |
Unspecified |
| scaffold25523 |
4898 |
5361 |
+ |
RS247 |
Unspecified |
| scaffold25523 |
4993 |
5461 |
+ |
RS247 |
Unspecified |
| scaffold25523 |
5086 |
5554 |
+ |
RS247 |
Unspecified |
| scaffold25523 |
5147 |
5618 |
+ |
RS247 |
Unspecified |
| scaffold25523 |
5240 |
5732 |
+ |
RS247 |
Unspecified |
| scaffold25523 |
6041 |
6861 |
- |
RS323 |
Unspecified |
| scaffold25523 |
6291 |
7000 |
+ |
RS832 |
Unspecified |
| scaffold25523 |
6449 |
6633 |
- |
RS5382 |
Unspecified |
| scaffold25523 |
6975 |
8052 |
- |
RS412 |
Unspecified |
| scaffold25523 |
8378 |
8467 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold25523 |
8588 |
8619 |
+ |
A-rich |
Low_complexity |
| scaffold25523 |
8951 |
9322 |
+ |
RS160 |
Unspecified |
| scaffold25523 |
11041 |
11074 |
+ |
(AAAAT)n |
Simple_repeat |
| scaffold25523 |
11243 |
11298 |
+ |
G-rich |
Low_complexity |
| scaffold25523 |
12049 |
12105 |
+ |
(T)n |
Simple_repeat |
| scaffold25523 |
12733 |
12855 |
+ |
(TTA)n |
Simple_repeat |
| scaffold25523 |
13510 |
13552 |
+ |
(T)n |
Simple_repeat |
| scaffold25523 |
13825 |
14081 |
+ |
RS1 |
Unspecified |
| scaffold25523 |
14585 |
14625 |
+ |
(TTTGACA)n |
Simple_repeat |
| scaffold25523 |
14952 |
15011 |
+ |
A-rich |
Low_complexity |
| scaffold25523 |
15910 |
15943 |
+ |
A-rich |
Low_complexity |
| scaffold25523 |
18375 |
18405 |
+ |
A-rich |
Low_complexity |
| scaffold25523 |
18406 |
18429 |
+ |
(A)n |
Simple_repeat |
| scaffold25523 |
18430 |
18447 |
+ |
A-rich |
Low_complexity |
| scaffold25523 |
19134 |
19153 |
+ |
(A)n |
Simple_repeat |
| scaffold25523 |
19432 |
19489 |
+ |
A-rich |
Low_complexity |
| scaffold25523 |
19944 |
19991 |
+ |
(TGATA)n |
Simple_repeat |
| scaffold25523 |
20187 |
20420 |
- |
RS2618 |
Unspecified |
| scaffold25523 |
20418 |
20654 |
+ |
RS488 |
Unspecified |
| scaffold25523 |
20653 |
21124 |
+ |
RS5939 |
Unspecified |
| scaffold25523 |
20660 |
21325 |
- |
PL489 |
Unspecified |
| scaffold25523 |
21906 |
23003 |
+ |
RS488 |
Unspecified |
| scaffold25523 |
23046 |
23181 |
+ |
ATENSPM2 |
DNA/CMC-EnSpm |
| scaffold25523 |
24346 |
25037 |
- |
RS1011 |
Unspecified |
| scaffold25523 |
25589 |
25617 |
+ |
(T)n |
Simple_repeat |
| scaffold25523 |
25685 |
25709 |
+ |
(T)n |
Simple_repeat |
| scaffold25523 |
27085 |
27166 |
+ |
COPI1_LTR |
LTR/Copia |
| scaffold25523 |
29341 |
29421 |
+ |
Ogre-LE1_I-int |
LTR/Gypsy |
| scaffold25523 |
29673 |
31040 |
+ |
Atlantys1_I-int |
LTR/Gypsy |
| scaffold25523 |
31152 |
31660 |
+ |
PL670 |
Unspecified |
| scaffold25523 |
31723 |
32382 |
+ |
RS158 |
Unspecified |
| scaffold25523 |
32381 |
32887 |
+ |
RS118 |
Unspecified |
| scaffold25523 |
33039 |
33163 |
- |
SZ-25_LTR |
LTR/Copia |
| scaffold25523 |
33978 |
34022 |
+ |
(TTTCGGT)n |
Simple_repeat |
| scaffold25523 |
34455 |
34637 |
+ |
Atlantys1_I-int |
LTR/Gypsy |
| scaffold25523 |
34944 |
35964 |
+ |
Gypsy16-VV_I-int |
LTR/Gypsy |
| scaffold25523 |
36227 |
36286 |
+ |
(GCAGA)n |
Simple_repeat |
| scaffold25523 |
36447 |
37394 |
+ |
A-rich |
Low_complexity |
| scaffold25523 |
36447 |
36520 |
+ |
A-rich |
Low_complexity |
| scaffold25523 |
36490 |
37394 |
+ |
RS157 |
Unspecified |
| scaffold25523 |
37395 |
38729 |
+ |
(CAGACAT)n |
Simple_repeat |
| scaffold25523 |
38684 |
38729 |
+ |
(CAGACAT)n |
Simple_repeat |
| scaffold25523 |
40465 |
40519 |
+ |
A-rich |
Low_complexity |
| scaffold25523 |
40881 |
40962 |
+ |
COPI1_LTR |
LTR/Copia |
| scaffold25523 |
41213 |
41262 |
+ |
(ATATCA)n |
Simple_repeat |
| scaffold25523 |
41510 |
41965 |
+ |
PL2 |
Unspecified |
| scaffold25523 |
42691 |
42723 |
+ |
(TTTGAA)n |
Simple_repeat |
| scaffold25523 |
42724 |
42760 |
+ |
(T)n |
Simple_repeat |
| scaffold25523 |
42761 |
42798 |
+ |
(TTTGAA)n |
Simple_repeat |
| scaffold25523 |
43067 |
43156 |
+ |
(TGAAC)n |
Simple_repeat |
| scaffold25523 |
43197 |
43358 |
- |
EnSpm-34_SBi |
DNA/CMC-EnSpm |
| scaffold25523 |
43541 |
43753 |
+ |
(AAT)n |
Simple_repeat |
| scaffold25523 |
43773 |
43850 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold25523 |
43902 |
44195 |
- |
PL132 |
Unspecified |
| scaffold25523 |
44021 |
44396 |
+ |
PL110 |
Unspecified |
| scaffold25523 |
44077 |
44395 |
- |
PL132 |
Unspecified |
| scaffold25523 |
44438 |
44463 |
+ |
(T)n |
Simple_repeat |
| scaffold25523 |
44609 |
44638 |
+ |
(A)n |
Simple_repeat |
| scaffold25523 |
46357 |
46391 |
+ |
(GTTG)n |
Simple_repeat |
| scaffold25523 |
47381 |
47429 |
+ |
(TGAT)n |
Simple_repeat |
| scaffold25523 |
48536 |
48556 |
+ |
(T)n |
Simple_repeat |
| scaffold25523 |
49598 |
49634 |
+ |
A-rich |
Low_complexity |
| scaffold25523 |
50658 |
50684 |
+ |
(TTCT)n |
Simple_repeat |
| scaffold25523 |
53435 |
53471 |
+ |
(T)n |
Simple_repeat |
| scaffold25523 |
55775 |
55843 |
+ |
(TAA)n |
Simple_repeat |
| scaffold25523 |
56587 |
56849 |
- |
RS356 |
Unspecified |
| scaffold25523 |
58586 |
58638 |
+ |
(TTA)n |
Simple_repeat |
| scaffold25523 |
59835 |
59859 |
+ |
(A)n |
Simple_repeat |
| scaffold25523 |
60073 |
60101 |
+ |
(AATAT)n |
Simple_repeat |
| scaffold25523 |
61213 |
61238 |
+ |
(TATT)n |
Simple_repeat |
| scaffold25523 |
61307 |
61339 |
+ |
(T)n |
Simple_repeat |
| scaffold25523 |
61864 |
61939 |
- |
RS132 |
Unspecified |
| scaffold25523 |
62254 |
62271 |
+ |
(GA)n |
Simple_repeat |
| scaffold25523 |
62571 |
62639 |
+ |
A-rich |
Low_complexity |
| scaffold25523 |
63549 |
63578 |
+ |
(AACC)n |
Simple_repeat |
| scaffold25523 |
63652 |
63686 |
+ |
(T)n |
Simple_repeat |
| scaffold25523 |
65590 |
65640 |
+ |
A-rich |
Low_complexity |
| scaffold25523 |
65729 |
65754 |
+ |
(AC)n |
Simple_repeat |
| scaffold25523 |
65944 |
65973 |
+ |
(CCT)n |
Simple_repeat |
| scaffold25523 |
68497 |
68545 |
+ |
(A)n |
Simple_repeat |
| scaffold25523 |
68762 |
68940 |
- |
RS1636 |
Unspecified |
| scaffold25523 |
68935 |
69416 |
+ |
A-rich |
Low_complexity |
| scaffold25523 |
69371 |
69416 |
+ |
A-rich |
Low_complexity |
| scaffold25523 |
69429 |
69502 |
- |
RS6158 |
Unspecified |
| scaffold25523 |
69743 |
69789 |
+ |
A-rich |
Low_complexity |
| scaffold25523 |
69790 |
69832 |
+ |
(A)n |
Simple_repeat |
| scaffold25523 |
69845 |
69923 |
- |
RS6158 |
Unspecified |
| scaffold25523 |
70629 |
70701 |
+ |
(AATTTT)n |
Simple_repeat |
| scaffold25523 |
71547 |
71571 |
+ |
(ATG)n |
Simple_repeat |
| scaffold25523 |
71692 |
71984 |
+ |
RS4686 |
Unspecified |
| scaffold25523 |
72058 |
72103 |
+ |
(ATA)n |
Simple_repeat |
| scaffold25523 |
72490 |
72524 |
+ |
(TGT)n |
Simple_repeat |
| scaffold25523 |
72839 |
72887 |
+ |
A-rich |
Low_complexity |
| scaffold25523 |
73319 |
73485 |
+ |
(TATAAG)n |
Simple_repeat |
| scaffold25523 |
73491 |
73565 |
- |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold25523 |
74165 |
74316 |
+ |
RS403 |
Unspecified |
| scaffold25523 |
74519 |
74952 |
- |
RS2 |
Unspecified |
| scaffold25523 |
74954 |
75391 |
+ |
RS4947 |
Unspecified |
| scaffold25523 |
75679 |
75761 |
+ |
A-rich |
Low_complexity |
| scaffold25523 |
76118 |
76148 |
+ |
(ACTATT)n |
Simple_repeat |
| scaffold25523 |
76345 |
76890 |
- |
PL47 |
Unspecified |
| scaffold25523 |
76974 |
77135 |
- |
RS2719 |
Unspecified |
| scaffold25523 |
77179 |
77213 |
+ |
(TAA)n |
Simple_repeat |
| scaffold25523 |
77982 |
78148 |
+ |
RS10976 |
Unspecified |
| scaffold25523 |
78264 |
78307 |
+ |
(A)n |
Simple_repeat |
| scaffold25523 |
78573 |
78747 |
+ |
RS648 |
Unspecified |
| scaffold25523 |
78965 |
79312 |
+ |
PL752 |
Unspecified |
| scaffold25523 |
80144 |
81554 |
+ |
RS51 |
Unspecified |
| scaffold25523 |
80631 |
81667 |
- |
PL956 |
Unspecified |
| scaffold25523 |
82269 |
82714 |
+ |
PL947 |
Unspecified |
| scaffold25523 |
82839 |
83076 |
+ |
GYPSY3-I_MT |
LTR/Gypsy |
| scaffold25523 |
83930 |
84868 |
+ |
RS105 |
Unspecified |
| scaffold25523 |
84213 |
85039 |
- |
RS1007 |
Unspecified |
| scaffold25523 |
84904 |
85147 |
- |
RS4906 |
Unspecified |
| scaffold25523 |
88824 |
90210 |
+ |
RS200 |
Unspecified |
| scaffold25523 |
90259 |
90469 |
+ |
PL392 |
Unspecified |
| scaffold25523 |
94185 |
94222 |
+ |
A-rich |
Low_complexity |
| scaffold25523 |
95071 |
95124 |
+ |
(AGCATA)n |
Simple_repeat |
| scaffold25523 |
97189 |
97239 |
+ |
A-rich |
Low_complexity |
| scaffold25523 |
97314 |
98540 |
+ |
RS655 |
Unspecified |
| scaffold25523 |
98984 |
99065 |
+ |
(ACAACAAG)n |
Simple_repeat |
| scaffold25523 |
100248 |
100310 |
+ |
(CATACA)n |
Simple_repeat |
| scaffold25523 |
104277 |
104341 |
+ |
Copia-88_VV-I |
LTR/Copia |
| scaffold25523 |
106372 |
106428 |
+ |
(AATTA)n |
Simple_repeat |
| scaffold25523 |
108030 |
108427 |
+ |
Copia26-VV_I-int |
LTR/Copia |
| scaffold25523 |
108278 |
108427 |
+ |
Copia26-VV_I-int |
LTR/Copia |
| scaffold25523 |
108706 |
108932 |
+ |
Copia-85_ST-I |
LTR/Copia |
| scaffold25523 |
108914 |
109107 |
+ |
RS648 |
Unspecified |
| scaffold25523 |
109571 |
109798 |
- |
RS217 |
Unspecified |
| scaffold25523 |
110445 |
110488 |
+ |
A-rich |
Low_complexity |
| scaffold25523 |
111049 |
111229 |
- |
PL670 |
Unspecified |
| scaffold25523 |
111720 |
111785 |
+ |
(TAATTT)n |
Simple_repeat |
| scaffold25523 |
111965 |
112114 |
+ |
(TAT)n |
Simple_repeat |
| scaffold25523 |
112448 |
112963 |
+ |
RS548 |
Unspecified |
| scaffold25523 |
113985 |
114004 |
+ |
(TC)n |
Simple_repeat |
| scaffold25523 |
114005 |
114081 |
+ |
(TA)n |
Simple_repeat |
| scaffold25523 |
115608 |
115657 |
+ |
(AATTT)n |
Simple_repeat |
| scaffold25523 |
117608 |
117674 |
- |
RS13496 |
Unspecified |
| scaffold25523 |
117617 |
119125 |
+ |
RS30 |
Unspecified |
| scaffold25523 |
119191 |
119229 |
+ |
(TTCACTA)n |
Simple_repeat |
| scaffold25523 |
119237 |
119856 |
+ |
(TTATAC)n |
Simple_repeat |
| scaffold25523 |
119237 |
119510 |
+ |
(TTATAC)n |
Simple_repeat |
| scaffold25523 |
119458 |
119856 |
+ |
PL49 |
Unspecified |
| scaffold25523 |
120740 |
120828 |
+ |
PL951 |
Unspecified |
| scaffold25523 |
120848 |
121105 |
+ |
PL8 |
Unspecified |
| scaffold25523 |
122008 |
122054 |
+ |
(TTTTAAT)n |
Simple_repeat |
| scaffold25523 |
122377 |
122731 |
- |
PL143 |
Unspecified |