scaffold2621 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold2621 |
904 |
1203 |
- |
PL408 |
Unspecified |
| scaffold2621 |
2617 |
3084 |
+ |
PL439 |
Unspecified |
| scaffold2621 |
3137 |
3272 |
+ |
RS1746 |
Unspecified |
| scaffold2621 |
3175 |
3344 |
- |
RS1746 |
Unspecified |
| scaffold2621 |
3419 |
3512 |
- |
RS11318 |
Unspecified |
| scaffold2621 |
3661 |
3700 |
+ |
(ATTA)n |
Simple_repeat |
| scaffold2621 |
3767 |
3783 |
+ |
(T)n |
Simple_repeat |
| scaffold2621 |
3845 |
3876 |
+ |
(TAC)n |
Simple_repeat |
| scaffold2621 |
4020 |
4087 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold2621 |
4242 |
4471 |
- |
RS7977 |
Unspecified |
| scaffold2621 |
5429 |
6570 |
- |
SHALINE10_MT |
LINE/L1 |
| scaffold2621 |
6604 |
6731 |
+ |
RS669 |
Unspecified |
| scaffold2621 |
6731 |
6873 |
- |
MARINER2_MT |
DNA/TcMar-Pogo |
| scaffold2621 |
6867 |
6998 |
- |
MARINER2_MT |
DNA/TcMar-Pogo |
| scaffold2621 |
7010 |
7089 |
- |
MARINER2_MT |
DNA/TcMar-Pogo |
| scaffold2621 |
7156 |
7174 |
+ |
(T)n |
Simple_repeat |
| scaffold2621 |
7494 |
7584 |
+ |
RS8705 |
Unspecified |
| scaffold2621 |
7619 |
7728 |
+ |
RS5156 |
Unspecified |
| scaffold2621 |
7780 |
8526 |
+ |
RS779 |
Unspecified |
| scaffold2621 |
8470 |
8576 |
- |
RS4367 |
Unspecified |
| scaffold2621 |
10051 |
10317 |
+ |
RS3651 |
Unspecified |
| scaffold2621 |
10504 |
11032 |
- |
RS910 |
Unspecified |
| scaffold2621 |
11085 |
12269 |
+ |
Gypsy-45_Mad-I |
LTR/Gypsy |
| scaffold2621 |
12277 |
12312 |
+ |
(AATATG)n |
Simple_repeat |
| scaffold2621 |
12864 |
12982 |
+ |
RS5156 |
Unspecified |
| scaffold2621 |
13098 |
13833 |
+ |
RS779 |
Unspecified |
| scaffold2621 |
15019 |
15070 |
+ |
(AATTAGAA)n |
Simple_repeat |
| scaffold2621 |
15410 |
15461 |
- |
LT1_EPa |
LTR? |
| scaffold2621 |
16517 |
17289 |
+ |
PL552 |
Unspecified |
| scaffold2621 |
18147 |
18271 |
- |
RS11193 |
Unspecified |
| scaffold2621 |
18573 |
18634 |
+ |
(AGTATCG)n |
Simple_repeat |
| scaffold2621 |
18711 |
18789 |
+ |
STOWAWAY12_SB |
DNA/TcMar-Stowaway |
| scaffold2621 |
19144 |
19165 |
+ |
(T)n |
Simple_repeat |
| scaffold2621 |
19252 |
19594 |
- |
RS9344 |
Unspecified |
| scaffold2621 |
19538 |
19694 |
+ |
RS7073 |
Unspecified |
| scaffold2621 |
19923 |
20020 |
+ |
(A)n |
Simple_repeat |
| scaffold2621 |
20143 |
20300 |
+ |
RS18 |
Unspecified |
| scaffold2621 |
20636 |
20740 |
- |
RS6309 |
Unspecified |
| scaffold2621 |
20863 |
20896 |
+ |
(TAATAT)n |
Simple_repeat |
| scaffold2621 |
20901 |
21031 |
- |
RS9231 |
Unspecified |
| scaffold2621 |
21167 |
21266 |
+ |
RS8705 |
Unspecified |
| scaffold2621 |
21268 |
21379 |
- |
RS144 |
Unspecified |
| scaffold2621 |
21438 |
21489 |
+ |
(CAC)n |
Simple_repeat |
| scaffold2621 |
21807 |
21900 |
+ |
RS8705 |
Unspecified |
| scaffold2621 |
21883 |
21970 |
+ |
RS5156 |
Unspecified |
| scaffold2621 |
22013 |
22241 |
+ |
PL587 |
Unspecified |
| scaffold2621 |
22244 |
22286 |
+ |
(T)n |
Simple_repeat |
| scaffold2621 |
22608 |
23391 |
+ |
RS4325 |
Unspecified |
| scaffold2621 |
24315 |
24437 |
- |
RS11193 |
Unspecified |
| scaffold2621 |
24464 |
24739 |
- |
PL567 |
Unspecified |
| scaffold2621 |
24745 |
24883 |
+ |
(TCTGAAGTTA)n |
Simple_repeat |
| scaffold2621 |
24892 |
24957 |
+ |
(TAATTG)n |
Simple_repeat |
| scaffold2621 |
25135 |
25251 |
+ |
(TTA)n |
Simple_repeat |
| scaffold2621 |
25257 |
25373 |
+ |
(ATCTGAAGTT)n |
Simple_repeat |
| scaffold2621 |
25407 |
25554 |
+ |
PL773 |
Unspecified |
| scaffold2621 |
25478 |
25579 |
+ |
PL567 |
Unspecified |
| scaffold2621 |
25982 |
26200 |
- |
RS15131 |
Unspecified |
| scaffold2621 |
26627 |
26892 |
- |
RS7932 |
Unspecified |
| scaffold2621 |
27304 |
27335 |
+ |
(A)n |
Simple_repeat |
| scaffold2621 |
27668 |
28057 |
+ |
RS9863 |
Unspecified |
| scaffold2621 |
27795 |
28565 |
+ |
PL552 |
Unspecified |
| scaffold2621 |
29090 |
29184 |
- |
PL466 |
Unspecified |
| scaffold2621 |
29180 |
29422 |
+ |
RS4 |
Unspecified |
| scaffold2621 |
29457 |
29514 |
+ |
A-rich |
Low_complexity |
| scaffold2621 |
29966 |
30055 |
+ |
PL661 |
Unspecified |
| scaffold2621 |
30314 |
30358 |
+ |
RS26 |
Unspecified |
| scaffold2621 |
30358 |
30445 |
+ |
RS26 |
Unspecified |
| scaffold2621 |
30511 |
30761 |
+ |
RS8 |
Unspecified |
| scaffold2621 |
31006 |
31051 |
+ |
A-rich |
Low_complexity |
| scaffold2621 |
31269 |
31310 |
+ |
(T)n |
Simple_repeat |
| scaffold2621 |
31665 |
32418 |
+ |
RS4325 |
Unspecified |
| scaffold2621 |
33869 |
34016 |
+ |
RS2994 |
Unspecified |
| scaffold2621 |
34175 |
34404 |
- |
RS18 |
Unspecified |
| scaffold2621 |
34486 |
34526 |
+ |
(AATTGTA)n |
Simple_repeat |
| scaffold2621 |
35036 |
35227 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold2621 |
36062 |
36099 |
+ |
(TAA)n |
Simple_repeat |
| scaffold2621 |
36210 |
36240 |
+ |
(TCAGAC)n |
Simple_repeat |
| scaffold2621 |
36305 |
36324 |
+ |
(T)n |
Simple_repeat |
| scaffold2621 |
36632 |
36664 |
+ |
(ATAAAATA)n |
Simple_repeat |
| scaffold2621 |
36771 |
36807 |
+ |
(ATCTTC)n |
Simple_repeat |
| scaffold2621 |
36863 |
37644 |
+ |
RS4325 |
Unspecified |
| scaffold2621 |
39508 |
39678 |
- |
RS371 |
Unspecified |
| scaffold2621 |
39706 |
39818 |
+ |
RS5156 |
Unspecified |
| scaffold2621 |
39897 |
40045 |
+ |
RS779 |
Unspecified |
| scaffold2621 |
40223 |
40720 |
- |
PL82 |
Unspecified |
| scaffold2621 |
40761 |
40809 |
- |
PL499 |
Unspecified |
| scaffold2621 |
41163 |
41579 |
+ |
Gypsy-120_GM-I |
LTR/Gypsy |
| scaffold2621 |
41733 |
41956 |
+ |
Gypsy-120_GM-I |
LTR/Gypsy |
| scaffold2621 |
42432 |
42578 |
+ |
RS8705 |
Unspecified |
| scaffold2621 |
42609 |
42720 |
+ |
RS5156 |
Unspecified |
| scaffold2621 |
42835 |
43417 |
+ |
RS779 |
Unspecified |
| scaffold2621 |
43419 |
43489 |
+ |
RS4325 |
Unspecified |
| scaffold2621 |
44414 |
44489 |
- |
RS11193 |
Unspecified |
| scaffold2621 |
44908 |
45089 |
+ |
RS79 |
Unspecified |
| scaffold2621 |
45261 |
45331 |
- |
PL436 |
Unspecified |
| scaffold2621 |
45261 |
45343 |
+ |
RS4475 |
Unspecified |
| scaffold2621 |
45792 |
46121 |
+ |
PL531 |
Unspecified |
| scaffold2621 |
46661 |
46834 |
- |
RS233 |
Unspecified |
| scaffold2621 |
46680 |
46841 |
+ |
RS2719 |
Unspecified |
| scaffold2621 |
46919 |
47390 |
+ |
PL582 |
Unspecified |
| scaffold2621 |
47858 |
48335 |
+ |
RS5221 |
Unspecified |
| scaffold2621 |
48866 |
49388 |
- |
RS4439 |
Unspecified |
| scaffold2621 |
49147 |
49672 |
+ |
RS1560 |
Unspecified |
| scaffold2621 |
49389 |
49530 |
- |
RS5277 |
Unspecified |
| scaffold2621 |
50489 |
50590 |
+ |
RS6345 |
Unspecified |
| scaffold2621 |
51651 |
51761 |
+ |
RS11962 |
Unspecified |
| scaffold2621 |
51860 |
52120 |
+ |
RS9101 |
Unspecified |
| scaffold2621 |
51940 |
52446 |
- |
RS4257 |
Unspecified |
| scaffold2621 |
52622 |
52639 |
+ |
(T)n |
Simple_repeat |
| scaffold2621 |
52771 |
53353 |
+ |
PL40 |
Unspecified |
| scaffold2621 |
53564 |
53855 |
+ |
HARB6_ZM |
DNA/PIF-Harbinger |
| scaffold2621 |
54098 |
54125 |
+ |
(AATTT)n |
Simple_repeat |
| scaffold2621 |
56298 |
56401 |
+ |
PL563 |
Unspecified |
| scaffold2621 |
57266 |
57331 |
- |
RS16366 |
Unspecified |
| scaffold2621 |
57432 |
57556 |
- |
RS11193 |
Unspecified |
| scaffold2621 |
59715 |
59975 |
- |
RS11193 |
Unspecified |
| scaffold2621 |
60075 |
60258 |
+ |
RS3716 |
Unspecified |
| scaffold2621 |
60130 |
60607 |
+ |
RS10994 |
Unspecified |
| scaffold2621 |
60610 |
61228 |
+ |
RS2957 |
Unspecified |
| scaffold2621 |
61084 |
61616 |
+ |
RS3284 |
Unspecified |
| scaffold2621 |
61119 |
61578 |
+ |
RS11547 |
Unspecified |
| scaffold2621 |
61746 |
61772 |
+ |
(ATTTTA)n |
Simple_repeat |
| scaffold2621 |
62241 |
62861 |
+ |
RS2957 |
Unspecified |
| scaffold2621 |
62716 |
63358 |
+ |
RS3284 |
Unspecified |
| scaffold2621 |
62752 |
63209 |
+ |
RS11547 |
Unspecified |
| scaffold2621 |
63198 |
63549 |
- |
RS1776 |
Unspecified |
| scaffold2621 |
63395 |
64148 |
+ |
RS3275 |
Unspecified |
| scaffold2621 |
64828 |
64852 |
+ |
(GTCCGA)n |
Simple_repeat |
| scaffold2621 |
65027 |
65146 |
- |
RS11193 |
Unspecified |
| scaffold2621 |
65360 |
65502 |
+ |
RS6111 |
Unspecified |
| scaffold2621 |
65885 |
66082 |
- |
RS16888 |
Unspecified |
| scaffold2621 |
66208 |
66383 |
- |
RS1329 |
Unspecified |
| scaffold2621 |
66538 |
66680 |
+ |
RS6111 |
Unspecified |
| scaffold2621 |
66777 |
66950 |
+ |
RS17860 |
Unspecified |
| scaffold2621 |
66983 |
67225 |
- |
RS16888 |
Unspecified |
| scaffold2621 |
67351 |
67526 |
- |
RS1329 |
Unspecified |
| scaffold2621 |
67911 |
68001 |
+ |
RS779 |
Unspecified |
| scaffold2621 |
68953 |
69209 |
- |
RS11193 |
Unspecified |
| scaffold2621 |
69417 |
69471 |
+ |
A-rich |
Low_complexity |
| scaffold2621 |
69598 |
69706 |
- |
PL565 |
Unspecified |
| scaffold2621 |
69687 |
69901 |
+ |
RS32 |
Unspecified |
| scaffold2621 |
69711 |
69922 |
+ |
RS3110 |
Unspecified |
| scaffold2621 |
69866 |
69931 |
- |
PL565 |
Unspecified |
| scaffold2621 |
70017 |
70039 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold2621 |
70017 |
70248 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold2621 |
70034 |
70248 |
+ |
RS3716 |
Unspecified |
| scaffold2621 |
70131 |
70576 |
+ |
RS10994 |
Unspecified |
| scaffold2621 |
70579 |
70972 |
+ |
RS2957 |
Unspecified |
| scaffold2621 |
70971 |
71612 |
+ |
RS3284 |
Unspecified |
| scaffold2621 |
71006 |
71463 |
+ |
RS11547 |
Unspecified |
| scaffold2621 |
71452 |
71803 |
- |
RS1776 |
Unspecified |
| scaffold2621 |
71649 |
72379 |
+ |
RS3275 |
Unspecified |
| scaffold2621 |
73243 |
73360 |
- |
RS11193 |
Unspecified |
| scaffold2621 |
73540 |
73682 |
+ |
RS6111 |
Unspecified |
| scaffold2621 |
73798 |
74437 |
+ |
RS3284 |
Unspecified |
| scaffold2621 |
73832 |
74288 |
+ |
RS11547 |
Unspecified |
| scaffold2621 |
74277 |
74628 |
- |
RS1776 |
Unspecified |
| scaffold2621 |
74474 |
75204 |
+ |
RS3275 |
Unspecified |
| scaffold2621 |
76333 |
76593 |
- |
RS11193 |
Unspecified |
| scaffold2621 |
76661 |
76834 |
+ |
RS3716 |
Unspecified |
| scaffold2621 |
76706 |
77182 |
+ |
RS10994 |
Unspecified |
| scaffold2621 |
77190 |
77811 |
+ |
RS2957 |
Unspecified |
| scaffold2621 |
77667 |
78333 |
+ |
RS3284 |
Unspecified |
| scaffold2621 |
78176 |
78516 |
- |
RS1776 |
Unspecified |
| scaffold2621 |
78363 |
78630 |
+ |
RS3275 |
Unspecified |
| scaffold2621 |
78604 |
78724 |
+ |
RS14439 |
Unspecified |
| scaffold2621 |
78905 |
78957 |
- |
Gypsy-6_HV-I |
LTR/Gypsy |
| scaffold2621 |
79574 |
79682 |
- |
RS11193 |
Unspecified |
| scaffold2621 |
79864 |
80406 |
- |
RS229 |
Unspecified |
| scaffold2621 |
80403 |
80951 |
+ |
PL637 |
Unspecified |
| scaffold2621 |
80977 |
81900 |
+ |
Gypsy-16_Mad-I |
LTR/Gypsy |
| scaffold2621 |
81873 |
81900 |
+ |
Gypsy-16_Mad-I |
LTR/Gypsy |
| scaffold2621 |
81880 |
81911 |
+ |
Gypsy-140_SBi-I |
LTR/Gypsy |
| scaffold2621 |
81918 |
81946 |
+ |
(TAGTG)n |
Simple_repeat |
| scaffold2621 |
82284 |
82927 |
+ |
RS699 |
Unspecified |
| scaffold2621 |
84831 |
84882 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold2621 |
85282 |
85380 |
+ |
(AAC)n |
Simple_repeat |
| scaffold2621 |
86386 |
86501 |
- |
Copia-4_SL-LTR |
LTR/Copia |
| scaffold2621 |
86459 |
86513 |
- |
Gypsy-31_Mad-LTR |
LTR/Gypsy |
| scaffold2621 |
87000 |
87048 |
+ |
(CGCTCGT)n |
Simple_repeat |
| scaffold2621 |
88031 |
88928 |
+ |
L1-1_PTr |
LINE/L1 |
| scaffold2621 |
90235 |
90279 |
+ |
Athila8B_I-int |
LTR/Gypsy |
| scaffold2621 |
90980 |
91145 |
+ |
Ogre-MT3_I-int |
LTR/Gypsy |
| scaffold2621 |
91069 |
91145 |
+ |
Ogre-MT3_I-int |
LTR/Gypsy |
| scaffold2621 |
91848 |
91906 |
+ |
A-rich |
Low_complexity |
| scaffold2621 |
92197 |
93154 |
- |
PL526 |
Unspecified |
| scaffold2621 |
93696 |
93717 |
+ |
(A)n |
Simple_repeat |
| scaffold2621 |
93856 |
93987 |
+ |
RS1748 |
Unspecified |
| scaffold2621 |
94215 |
94281 |
- |
RS750 |
Unspecified |
| scaffold2621 |
94595 |
94714 |
+ |
RS11193 |
Unspecified |
| scaffold2621 |
95563 |
95637 |
- |
PL552 |
Unspecified |
| scaffold2621 |
96418 |
96463 |
+ |
(TATCAT)n |
Simple_repeat |
| scaffold2621 |
96790 |
97148 |
+ |
RS10994 |
Unspecified |
| scaffold2621 |
97154 |
97223 |
+ |
RS2957 |
Unspecified |
| scaffold2621 |
97164 |
97418 |
+ |
(TTTGTTTT)n |
Simple_repeat |
| scaffold2621 |
97377 |
97418 |
+ |
(TTTGTTTT)n |
Simple_repeat |
| scaffold2621 |
98012 |
98360 |
- |
RS1776 |
Unspecified |
| scaffold2621 |
98198 |
98586 |
+ |
RS3275 |
Unspecified |
| scaffold2621 |
98391 |
98729 |
+ |
RS10968 |
Unspecified |
| scaffold2621 |
98947 |
99010 |
+ |
RS3275 |
Unspecified |
| scaffold2621 |
99329 |
99472 |
+ |
RS11860 |
Unspecified |
| scaffold2621 |
99516 |
99554 |
+ |
(A)n |
Simple_repeat |
| scaffold2621 |
99817 |
100045 |
+ |
RS14439 |
Unspecified |
| scaffold2621 |
100871 |
100993 |
- |
RS11193 |
Unspecified |
| scaffold2621 |
101384 |
101500 |
+ |
A-rich |
Low_complexity |
| scaffold2621 |
101658 |
101799 |
+ |
RS6111 |
Unspecified |
| scaffold2621 |
101811 |
101821 |
+ |
(TTAT)n |
Simple_repeat |
| scaffold2621 |
101822 |
101864 |
+ |
(T)n |
Simple_repeat |
| scaffold2621 |
101913 |
102087 |
+ |
RS15470 |
Unspecified |
| scaffold2621 |
102807 |
102940 |
+ |
RS6127 |
Unspecified |
| scaffold2621 |
104373 |
104499 |
+ |
RS8440 |
Unspecified |
| scaffold2621 |
104839 |
104865 |
+ |
(TCA)n |
Simple_repeat |
| scaffold2621 |
104866 |
104904 |
+ |
(GTCCTC)n |
Simple_repeat |
| scaffold2621 |
106473 |
106785 |
- |
RS1359 |
Unspecified |
| scaffold2621 |
106500 |
106729 |
+ |
RS4308 |
Unspecified |
| scaffold2621 |
107982 |
108061 |
+ |
RS4367 |
Unspecified |
| scaffold2621 |
108053 |
108707 |
- |
RS779 |
Unspecified |
| scaffold2621 |
109109 |
109131 |
+ |
(T)n |
Simple_repeat |
| scaffold2621 |
109701 |
109734 |
+ |
(ATT)n |
Simple_repeat |
| scaffold2621 |
109805 |
109886 |
- |
RS163 |
Unspecified |
| scaffold2621 |
109929 |
110254 |
+ |
RS10994 |
Unspecified |
| scaffold2621 |
110277 |
110348 |
+ |
RS2957 |
Unspecified |
| scaffold2621 |
110290 |
110559 |
+ |
(T)n |
Simple_repeat |
| scaffold2621 |
110538 |
110559 |
+ |
(T)n |
Simple_repeat |
| scaffold2621 |
111296 |
111684 |
+ |
RS3275 |
Unspecified |
| scaffold2621 |
111489 |
111825 |
+ |
RS10968 |
Unspecified |
| scaffold2621 |
112086 |
112141 |
+ |
RS3275 |
Unspecified |
| scaffold2621 |
112312 |
112455 |
+ |
RS11860 |
Unspecified |
| scaffold2621 |
112786 |
113012 |
+ |
RS14439 |
Unspecified |
| scaffold2621 |
114433 |
114482 |
+ |
A-rich |
Low_complexity |
| scaffold2621 |
114692 |
114743 |
+ |
(TTG)n |
Simple_repeat |
| scaffold2621 |
114833 |
114965 |
+ |
RS6127 |
Unspecified |
| scaffold2621 |
118357 |
118458 |
+ |
RS1 |
Unspecified |
| scaffold2621 |
118505 |
118740 |
- |
PL438 |
Unspecified |
| scaffold2621 |
118923 |
118994 |
+ |
(TTATTT)n |
Simple_repeat |
| scaffold2621 |
119270 |
119510 |
- |
RS4 |
Unspecified |
| scaffold2621 |
119619 |
119737 |
+ |
RS3747 |
Unspecified |
| scaffold2621 |
119934 |
120132 |
+ |
RS5395 |
Unspecified |