scaffold26403 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold26403 |
1 |
1157 |
+ |
PL647 |
Unspecified |
| scaffold26403 |
1430 |
1532 |
+ |
PL647 |
Unspecified |
| scaffold26403 |
1716 |
4393 |
- |
Copia-13_SB-I |
LTR/Copia |
| scaffold26403 |
1716 |
2271 |
- |
Copia-13_SB-I |
LTR/Copia |
| scaffold26403 |
2022 |
4393 |
+ |
RS123 |
Unspecified |
| scaffold26403 |
4394 |
5035 |
+ |
gypsy |
gypsy(TransposonPSI) |
| scaffold26403 |
5435 |
6233 |
- |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold26403 |
7128 |
7220 |
+ |
(TGTTT)n |
Simple_repeat |
| scaffold26403 |
7181 |
7225 |
+ |
(TTTTGT)n |
Simple_repeat |
| scaffold26403 |
7643 |
7720 |
+ |
(TTTTAA)n |
Simple_repeat |
| scaffold26403 |
8917 |
12552 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold26403 |
9060 |
9155 |
+ |
RIRE1_I-int |
LTR/Copia |
| scaffold26403 |
9512 |
12497 |
+ |
RIRE1_I-int |
LTR/Copia |
| scaffold26403 |
13121 |
13174 |
+ |
RIRE1_I-int |
LTR/Copia |
| scaffold26403 |
14380 |
14448 |
+ |
(TTTGTT)n |
Simple_repeat |
| scaffold26403 |
15138 |
15174 |
+ |
A-rich |
Low_complexity |
| scaffold26403 |
15676 |
16236 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold26403 |
18665 |
18721 |
+ |
A-rich |
Low_complexity |
| scaffold26403 |
21299 |
21336 |
+ |
(CCCATCA)n |
Simple_repeat |
| scaffold26403 |
22197 |
22302 |
+ |
(ATTCATA)n |
Simple_repeat |
| scaffold26403 |
22934 |
22958 |
+ |
(TTAT)n |
Simple_repeat |
| scaffold26403 |
23521 |
24335 |
+ |
Copia-32-I_VV |
LTR/Copia |
| scaffold26403 |
25232 |
25262 |
+ |
(GGCCC)n |
Simple_repeat |
| scaffold26403 |
25513 |
26020 |
+ |
RIRE1_I-int |
LTR/Copia |
| scaffold26403 |
26125 |
26231 |
+ |
G-rich |
Low_complexity |
| scaffold26403 |
26266 |
26288 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold26403 |
27136 |
27271 |
+ |
(TATAAGCA)n |
Simple_repeat |
| scaffold26403 |
28467 |
28516 |
+ |
(AATTTTG)n |
Simple_repeat |
| scaffold26403 |
28719 |
28817 |
+ |
COP14_I_MT-int |
LTR/Copia |
| scaffold26403 |
29436 |
29490 |
+ |
(TTAGTTT)n |
Simple_repeat |
| scaffold26403 |
29717 |
29829 |
+ |
RS186 |
Unspecified |
| scaffold26403 |
32641 |
33027 |
+ |
RS2308 |
Unspecified |
| scaffold26403 |
33210 |
33228 |
+ |
(A)n |
Simple_repeat |
| scaffold26403 |
34153 |
34191 |
+ |
A-rich |
Low_complexity |
| scaffold26403 |
34978 |
34995 |
+ |
(ATT)n |
Simple_repeat |
| scaffold26403 |
35860 |
37446 |
- |
Copia-96_GM-I |
LTR/Copia |
| scaffold26403 |
37645 |
38586 |
- |
Copia-96_GM-I |
LTR/Copia |
| scaffold26403 |
40009 |
40038 |
+ |
(ATG)n |
Simple_repeat |
| scaffold26403 |
42835 |
43257 |
- |
RS458 |
Unspecified |
| scaffold26403 |
43846 |
43867 |
+ |
(A)n |
Simple_repeat |
| scaffold26403 |
44476 |
44555 |
- |
RS458 |
Unspecified |
| scaffold26403 |
44979 |
45016 |
+ |
(T)n |
Simple_repeat |
| scaffold26403 |
45169 |
45206 |
+ |
(A)n |
Simple_repeat |
| scaffold26403 |
45496 |
45548 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold26403 |
45624 |
45655 |
+ |
(ATGTTG)n |
Simple_repeat |
| scaffold26403 |
46275 |
46304 |
+ |
(AAT)n |
Simple_repeat |
| scaffold26403 |
46945 |
46990 |
+ |
(ATT)n |
Simple_repeat |
| scaffold26403 |
47276 |
47309 |
+ |
(TTATT)n |
Simple_repeat |
| scaffold26403 |
48222 |
48272 |
+ |
(CCCACAT)n |
Simple_repeat |
| scaffold26403 |
48730 |
48750 |
+ |
(T)n |
Simple_repeat |
| scaffold26403 |
49279 |
49295 |
+ |
(T)n |
Simple_repeat |
| scaffold26403 |
49369 |
49443 |
+ |
(TTTTTAA)n |
Simple_repeat |
| scaffold26403 |
50467 |
50534 |
+ |
(TATTTA)n |
Simple_repeat |
| scaffold26403 |
50877 |
50939 |
+ |
(ATTAA)n |
Simple_repeat |
| scaffold26403 |
51757 |
51835 |
+ |
(TA)n |
Simple_repeat |
| scaffold26403 |
52502 |
52583 |
+ |
(TGT)n |
Simple_repeat |
| scaffold26403 |
55353 |
55946 |
- |
PL563 |
Unspecified |
| scaffold26403 |
56627 |
56680 |
+ |
A-rich |
Low_complexity |
| scaffold26403 |
56925 |
56968 |
+ |
A-rich |
Low_complexity |
| scaffold26403 |
57237 |
57266 |
+ |
(TTCGGG)n |
Simple_repeat |
| scaffold26403 |
57520 |
57971 |
- |
RS132 |
Unspecified |
| scaffold26403 |
57974 |
58240 |
- |
PL836 |
Unspecified |
| scaffold26403 |
58493 |
58511 |
+ |
(A)n |
Simple_repeat |
| scaffold26403 |
58610 |
58641 |
+ |
(A)n |
Simple_repeat |
| scaffold26403 |
58610 |
58787 |
+ |
(A)n |
Simple_repeat |
| scaffold26403 |
58632 |
58787 |
- |
RS132 |
Unspecified |
| scaffold26403 |
59068 |
59312 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold26403 |
59482 |
59695 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold26403 |
59919 |
59963 |
+ |
(TTAT)n |
Simple_repeat |
| scaffold26403 |
60294 |
60427 |
+ |
RS9654 |
Unspecified |
| scaffold26403 |
60698 |
60910 |
+ |
RS6506 |
Unspecified |
| scaffold26403 |
62073 |
62195 |
+ |
RS10794 |
Unspecified |
| scaffold26403 |
62477 |
63124 |
- |
Copia26-PTR_I-int |
LTR/Copia |
| scaffold26403 |
63270 |
63392 |
+ |
RS10794 |
Unspecified |
| scaffold26403 |
63951 |
64197 |
+ |
PL727 |
Unspecified |
| scaffold26403 |
64290 |
64337 |
+ |
(TCTTCA)n |
Simple_repeat |
| scaffold26403 |
64592 |
64934 |
+ |
PL727 |
Unspecified |
| scaffold26403 |
65245 |
66510 |
- |
L1-15_GM |
LINE/L1 |
| scaffold26403 |
67106 |
67189 |
- |
L1-2_STu |
LINE/L1 |
| scaffold26403 |
70046 |
70084 |
+ |
(GATCATA)n |
Simple_repeat |
| scaffold26403 |
70071 |
70107 |
+ |
(TAGTCAT)n |
Simple_repeat |
| scaffold26403 |
70168 |
70274 |
+ |
RS9553 |
Unspecified |
| scaffold26403 |
70324 |
70446 |
+ |
RS7531 |
Unspecified |
| scaffold26403 |
70968 |
71221 |
- |
RS6435 |
Unspecified |
| scaffold26403 |
71218 |
71337 |
- |
RS15357 |
Unspecified |
| scaffold26403 |
73046 |
73671 |
+ |
LTR-2_MX-LTR |
LTR |
| scaffold26403 |
73046 |
73130 |
+ |
LTR-2_MX-LTR |
LTR |
| scaffold26403 |
73107 |
73671 |
+ |
RS347 |
Unspecified |
| scaffold26403 |
73664 |
73700 |
+ |
RS347 |
Unspecified |
| scaffold26403 |
73772 |
73795 |
+ |
(T)n |
Simple_repeat |
| scaffold26403 |
73901 |
74016 |
- |
RS15138 |
Unspecified |
| scaffold26403 |
73919 |
74192 |
+ |
RS1 |
Unspecified |
| scaffold26403 |
74597 |
74626 |
+ |
(TTTTG)n |
Simple_repeat |
| scaffold26403 |
74852 |
74878 |
+ |
(T)n |
Simple_repeat |
| scaffold26403 |
77044 |
77079 |
+ |
(TTATTCC)n |
Simple_repeat |
| scaffold26403 |
77419 |
77465 |
+ |
(A)n |
Simple_repeat |
| scaffold26403 |
79663 |
79753 |
+ |
LTR-7_Mad-LTR |
LTR |
| scaffold26403 |
80256 |
80308 |
+ |
A-rich |
Low_complexity |
| scaffold26403 |
80546 |
80748 |
- |
RS28 |
Unspecified |
| scaffold26403 |
80816 |
81205 |
- |
RS160 |
Unspecified |
| scaffold26403 |
81844 |
81875 |
+ |
(AAAT)n |
Simple_repeat |
| scaffold26403 |
82407 |
82473 |
+ |
GA-rich |
Low_complexity |
| scaffold26403 |
82506 |
82542 |
+ |
G-rich |
Low_complexity |
| scaffold26403 |
83803 |
83842 |
+ |
(AAT)n |
Simple_repeat |
| scaffold26403 |
85367 |
85627 |
- |
RS1 |
Unspecified |
| scaffold26403 |
85738 |
85783 |
+ |
(ATTTCAGAAA)n |
Simple_repeat |
| scaffold26403 |
85792 |
85830 |
+ |
(AAT)n |
Simple_repeat |
| scaffold26403 |
86378 |
86412 |
+ |
(AATAATA)n |
Simple_repeat |
| scaffold26403 |
86566 |
87273 |
+ |
LINE |
LINE(TransposonPSI) |
| scaffold26403 |
86714 |
86752 |
+ |
L1-14_GM |
LINE/L1 |
| scaffold26403 |
86926 |
87249 |
+ |
L1-1_PTr |
LINE/L1 |
| scaffold26403 |
87583 |
87649 |
+ |
(TTTTAA)n |
Simple_repeat |
| scaffold26403 |
87979 |
88174 |
- |
PL688 |
Unspecified |
| scaffold26403 |
88379 |
88419 |
+ |
(AGGCGG)n |
Simple_repeat |
| scaffold26403 |
88614 |
88655 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold26403 |
88815 |
89074 |
- |
RS109 |
Unspecified |
| scaffold26403 |
89322 |
89365 |
+ |
(A)n |
Simple_repeat |
| scaffold26403 |
89574 |
89910 |
+ |
(TTA)n |
Simple_repeat |
| scaffold26403 |
89823 |
89910 |
+ |
(TTA)n |
Simple_repeat |
| scaffold26403 |
90445 |
91368 |
+ |
RS245 |
Unspecified |
| scaffold26403 |
91361 |
91575 |
+ |
RS160 |
Unspecified |
| scaffold26403 |
91665 |
91686 |
+ |
(TAG)n |
Simple_repeat |
| scaffold26403 |
91695 |
91763 |
+ |
(ACAT)n |
Simple_repeat |
| scaffold26403 |
92761 |
92800 |
+ |
(A)n |
Simple_repeat |
| scaffold26403 |
92837 |
92958 |
+ |
DS-RICE3N |
DNA/hAT-Ac |
| scaffold26403 |
93378 |
93412 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold26403 |
93413 |
93457 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold26403 |
93458 |
93505 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold26403 |
93530 |
93638 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold26403 |
93663 |
93716 |
+ |
A-rich |
Low_complexity |
| scaffold26403 |
93913 |
93951 |
+ |
(TTTTCAA)n |
Simple_repeat |
| scaffold26403 |
94106 |
94137 |
+ |
(CAC)n |
Simple_repeat |
| scaffold26403 |
94180 |
94270 |
+ |
(AACCCT)n |
Simple_repeat |
| scaffold26403 |
94540 |
94587 |
+ |
A-rich |
Low_complexity |
| scaffold26403 |
96062 |
96215 |
- |
hAT-N16_ZM |
DNA/hAT-Ac |
| scaffold26403 |
96273 |
96302 |
+ |
(T)n |
Simple_repeat |
| scaffold26403 |
97002 |
97023 |
+ |
(T)n |
Simple_repeat |
| scaffold26403 |
97081 |
97195 |
+ |
(ATTTA)n |
Simple_repeat |
| scaffold26403 |
97923 |
97956 |
- |
RS64 |
Unspecified |
| scaffold26403 |
99127 |
99191 |
+ |
(TTAGTC)n |
Simple_repeat |
| scaffold26403 |
99820 |
99925 |
+ |
(AAGATG)n |
Simple_repeat |
| scaffold26403 |
100028 |
100046 |
+ |
(T)n |
Simple_repeat |
| scaffold26403 |
100633 |
100721 |
+ |
(TGAAGAT)n |
Simple_repeat |
| scaffold26403 |
102088 |
102121 |
+ |
(TTAAT)n |
Simple_repeat |
| scaffold26403 |
102323 |
102393 |
+ |
G-rich |
Low_complexity |
| scaffold26403 |
103946 |
104089 |
+ |
RS2057 |
Unspecified |
| scaffold26403 |
104803 |
104944 |
- |
RS950 |
Unspecified |
| scaffold26403 |
105288 |
105331 |
+ |
(TTTAT)n |
Simple_repeat |
| scaffold26403 |
105581 |
105691 |
+ |
G-rich |
Low_complexity |
| scaffold26403 |
105734 |
105765 |
+ |
(GGT)n |
Simple_repeat |
| scaffold26403 |
105920 |
105958 |
+ |
A-rich |
Low_complexity |
| scaffold26403 |
106233 |
106341 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold26403 |
106366 |
106413 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold26403 |
106414 |
106458 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold26403 |
106459 |
106493 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold26403 |
106922 |
107075 |
+ |
hAT-N16_ZM |
DNA/hAT-Ac |
| scaffold26403 |
107244 |
107264 |
+ |
ZhATN1_ZM |
DNA/hAT-Ac |
| scaffold26403 |
107265 |
107431 |
- |
DS-RICE3N |
DNA/hAT-Ac |
| scaffold26403 |
108145 |
108290 |
+ |
RS2057 |
Unspecified |
| scaffold26403 |
108490 |
108625 |
+ |
RS300 |
Unspecified |
| scaffold26403 |
108583 |
108649 |
- |
RS300 |
Unspecified |
| scaffold26403 |
108672 |
108711 |
+ |
A-rich |
Low_complexity |
| scaffold26403 |
108983 |
109125 |
+ |
RS12025 |
Unspecified |
| scaffold26403 |
109116 |
109229 |
+ |
RS9654 |
Unspecified |
| scaffold26403 |
109323 |
109367 |
+ |
(T)n |
Simple_repeat |
| scaffold26403 |
111219 |
112839 |
- |
BvL1 |
LINE/L1 |
| scaffold26403 |
112976 |
113051 |
- |
LINE-1 |
LINE/L1 |
| scaffold26403 |
113366 |
113414 |
+ |
(ATAT)n |
Simple_repeat |
| scaffold26403 |
113460 |
113501 |
+ |
(TTTTA)n |
Simple_repeat |
| scaffold26403 |
113510 |
113833 |
+ |
PL72 |
Unspecified |
| scaffold26403 |
113831 |
113967 |
+ |
PL126 |
Unspecified |
| scaffold26403 |
113965 |
114101 |
+ |
PL126 |
Unspecified |
| scaffold26403 |
114222 |
114253 |
+ |
(ATTTTA)n |
Simple_repeat |
| scaffold26403 |
115201 |
115232 |
+ |
(A)n |
Simple_repeat |
| scaffold26403 |
115229 |
115368 |
- |
RS6556 |
Unspecified |
| scaffold26403 |
115266 |
115475 |
- |
RS522 |
Unspecified |
| scaffold26403 |
115481 |
115679 |
+ |
RS3855 |
Unspecified |
| scaffold26403 |
116622 |
116688 |
+ |
(TTA)n |
Simple_repeat |
| scaffold26403 |
116689 |
116713 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold26403 |
116714 |
116726 |
+ |
(TTA)n |
Simple_repeat |