scaffold29073 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold29073 |
1 |
126 |
+ |
RS257 |
Unspecified |
| scaffold29073 |
170 |
1271 |
+ |
Gypsy-72_GM-I |
LTR/Gypsy |
| scaffold29073 |
607 |
642 |
+ |
(T)n |
Simple_repeat |
| scaffold29073 |
798 |
868 |
+ |
(T)n |
Simple_repeat |
| scaffold29073 |
2345 |
2521 |
+ |
RS257 |
Unspecified |
| scaffold29073 |
2524 |
2824 |
- |
RS660 |
Unspecified |
| scaffold29073 |
2821 |
3627 |
+ |
(T)n |
Simple_repeat |
| scaffold29073 |
3588 |
3627 |
+ |
(T)n |
Simple_repeat |
| scaffold29073 |
3669 |
3703 |
+ |
(T)n |
Simple_repeat |
| scaffold29073 |
4139 |
4180 |
+ |
GA-rich |
Low_complexity |
| scaffold29073 |
4290 |
4898 |
- |
ATGP3A_I-int |
LTR/Gypsy |
| scaffold29073 |
4990 |
6266 |
- |
ATGP3A_I-int |
LTR/Gypsy |
| scaffold29073 |
7573 |
7615 |
+ |
(TTTCGGT)n |
Simple_repeat |
| scaffold29073 |
10127 |
10202 |
+ |
RS398 |
Unspecified |
| scaffold29073 |
10143 |
10644 |
+ |
RS67 |
Unspecified |
| scaffold29073 |
10646 |
11813 |
- |
RS833 |
Unspecified |
| scaffold29073 |
11073 |
12302 |
+ |
RS996 |
Unspecified |
| scaffold29073 |
12662 |
12718 |
+ |
(GTTT)n |
Simple_repeat |
| scaffold29073 |
12797 |
12823 |
+ |
(T)n |
Simple_repeat |
| scaffold29073 |
13153 |
13247 |
+ |
(AAT)n |
Simple_repeat |
| scaffold29073 |
14456 |
14485 |
+ |
(TTATT)n |
Simple_repeat |
| scaffold29073 |
15681 |
15719 |
+ |
(TCA)n |
Simple_repeat |
| scaffold29073 |
15814 |
15866 |
+ |
(TGG)n |
Simple_repeat |
| scaffold29073 |
16284 |
16358 |
+ |
A-rich |
Low_complexity |
| scaffold29073 |
16782 |
16815 |
+ |
(ATA)n |
Simple_repeat |
| scaffold29073 |
17107 |
17155 |
+ |
A-rich |
Low_complexity |
| scaffold29073 |
17572 |
17646 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold29073 |
18246 |
18318 |
+ |
(TAAGTA)n |
Simple_repeat |
| scaffold29073 |
19828 |
20026 |
- |
RS30 |
Unspecified |
| scaffold29073 |
21074 |
21120 |
+ |
(AAT)n |
Simple_repeat |
| scaffold29073 |
21529 |
21562 |
+ |
(A)n |
Simple_repeat |
| scaffold29073 |
21568 |
21604 |
+ |
(AACT)n |
Simple_repeat |
| scaffold29073 |
21993 |
22034 |
+ |
(TGG)n |
Simple_repeat |
| scaffold29073 |
22762 |
22813 |
+ |
(A)n |
Simple_repeat |
| scaffold29073 |
23223 |
23258 |
+ |
(AATTC)n |
Simple_repeat |
| scaffold29073 |
23271 |
23295 |
+ |
(T)n |
Simple_repeat |
| scaffold29073 |
23312 |
23353 |
+ |
(TTGATT)n |
Simple_repeat |
| scaffold29073 |
25547 |
25568 |
+ |
(T)n |
Simple_repeat |
| scaffold29073 |
26385 |
26414 |
+ |
(TATG)n |
Simple_repeat |
| scaffold29073 |
27139 |
27180 |
+ |
(AGTGAA)n |
Simple_repeat |
| scaffold29073 |
27210 |
27290 |
+ |
(ATACGGT)n |
Simple_repeat |
| scaffold29073 |
27970 |
27986 |
+ |
(A)n |
Simple_repeat |
| scaffold29073 |
29183 |
29217 |
+ |
A-rich |
Low_complexity |
| scaffold29073 |
29366 |
29679 |
- |
Copia-78_ST-I |
LTR/Copia |
| scaffold29073 |
29681 |
30832 |
- |
Copia-78_ST-I |
LTR/Copia |
| scaffold29073 |
31006 |
32049 |
- |
Copia-78_ST-I |
LTR/Copia |
| scaffold29073 |
32191 |
32425 |
- |
Copia-78_ST-I |
LTR/Copia |
| scaffold29073 |
33061 |
33651 |
- |
Copia-78_ST-I |
LTR/Copia |
| scaffold29073 |
34451 |
34472 |
+ |
(A)n |
Simple_repeat |
| scaffold29073 |
34618 |
34654 |
+ |
(TATTAAT)n |
Simple_repeat |
| scaffold29073 |
38462 |
38526 |
+ |
(TGTA)n |
Simple_repeat |
| scaffold29073 |
38575 |
38651 |
- |
RS2212 |
Unspecified |
| scaffold29073 |
38632 |
38708 |
- |
RS2212 |
Unspecified |
| scaffold29073 |
38689 |
38765 |
- |
RS2212 |
Unspecified |
| scaffold29073 |
38746 |
38822 |
- |
RS2212 |
Unspecified |
| scaffold29073 |
38804 |
38879 |
- |
RS2212 |
Unspecified |
| scaffold29073 |
39250 |
40743 |
- |
gypsy |
gypsy(TransposonPSI) |
| scaffold29073 |
39793 |
39954 |
- |
Gypsy-29_Mad-I |
LTR/Gypsy |
| scaffold29073 |
41339 |
41720 |
- |
Gypsy-29_Mad-I |
LTR/Gypsy |
| scaffold29073 |
42111 |
42155 |
+ |
A-rich |
Low_complexity |
| scaffold29073 |
42229 |
43523 |
+ |
RS443 |
Unspecified |
| scaffold29073 |
45133 |
45175 |
+ |
(AAT)n |
Simple_repeat |
| scaffold29073 |
45269 |
45314 |
+ |
A-rich |
Low_complexity |
| scaffold29073 |
45409 |
45430 |
+ |
(GCCG)n |
Simple_repeat |
| scaffold29073 |
46434 |
47055 |
- |
PL103 |
Unspecified |
| scaffold29073 |
48423 |
48766 |
- |
RS976 |
Unspecified |
| scaffold29073 |
48971 |
50031 |
- |
RS266 |
Unspecified |
| scaffold29073 |
50032 |
51233 |
- |
ATCopia94_I-int |
LTR/Copia |
| scaffold29073 |
51483 |
52032 |
- |
ATCopia94_I-int |
LTR/Copia |
| scaffold29073 |
53127 |
53164 |
+ |
(ACACATT)n |
Simple_repeat |
| scaffold29073 |
53186 |
53549 |
+ |
PL89 |
Unspecified |
| scaffold29073 |
54182 |
54237 |
+ |
(ATTTTT)n |
Simple_repeat |
| scaffold29073 |
55016 |
55069 |
+ |
(ATA)n |
Simple_repeat |
| scaffold29073 |
55513 |
55574 |
+ |
A-rich |
Low_complexity |
| scaffold29073 |
55798 |
55848 |
+ |
(TTTAA)n |
Simple_repeat |
| scaffold29073 |
55847 |
56425 |
+ |
PL268 |
Unspecified |
| scaffold29073 |
56438 |
56956 |
- |
PL351 |
Unspecified |
| scaffold29073 |
57148 |
57192 |
+ |
(AAC)n |
Simple_repeat |
| scaffold29073 |
57193 |
57235 |
+ |
(AAT)n |
Simple_repeat |
| scaffold29073 |
57236 |
57278 |
+ |
(AAC)n |
Simple_repeat |
| scaffold29073 |
57279 |
57313 |
+ |
(TAA)n |
Simple_repeat |
| scaffold29073 |
57314 |
57404 |
+ |
(AAC)n |
Simple_repeat |
| scaffold29073 |
57815 |
58013 |
- |
RS3628 |
Unspecified |
| scaffold29073 |
57979 |
58114 |
- |
RS8209 |
Unspecified |
| scaffold29073 |
58127 |
58275 |
+ |
RS8365 |
Unspecified |
| scaffold29073 |
58188 |
58347 |
+ |
RS3332 |
Unspecified |
| scaffold29073 |
58665 |
58949 |
+ |
(TATAAG)n |
Simple_repeat |
| scaffold29073 |
58665 |
58811 |
+ |
(TATAAG)n |
Simple_repeat |
| scaffold29073 |
58758 |
59028 |
+ |
A-rich |
Low_complexity |
| scaffold29073 |
58903 |
59028 |
+ |
A-rich |
Low_complexity |
| scaffold29073 |
59119 |
59212 |
+ |
(ATCTAT)n |
Simple_repeat |
| scaffold29073 |
59285 |
59410 |
+ |
RS13105 |
Unspecified |
| scaffold29073 |
59323 |
59492 |
+ |
RS13111 |
Unspecified |
| scaffold29073 |
59739 |
59964 |
+ |
RS9996 |
Unspecified |
| scaffold29073 |
61050 |
61129 |
+ |
(TGC)n |
Simple_repeat |
| scaffold29073 |
61673 |
62089 |
+ |
RS7950 |
Unspecified |
| scaffold29073 |
62057 |
62405 |
+ |
RS6222 |
Unspecified |
| scaffold29073 |
62305 |
62437 |
+ |
RS7254 |
Unspecified |
| scaffold29073 |
62441 |
62645 |
+ |
RS10750 |
Unspecified |
| scaffold29073 |
62671 |
62774 |
+ |
RS9577 |
Unspecified |
| scaffold29073 |
62994 |
63434 |
+ |
RS6194 |
Unspecified |
| scaffold29073 |
63325 |
63523 |
+ |
RS9177 |
Unspecified |
| scaffold29073 |
63688 |
63943 |
- |
RS5566 |
Unspecified |
| scaffold29073 |
64029 |
64255 |
- |
RS2518 |
Unspecified |
| scaffold29073 |
64454 |
65253 |
+ |
PL874 |
Unspecified |
| scaffold29073 |
66732 |
66832 |
- |
RS2326 |
Unspecified |
| scaffold29073 |
67276 |
67410 |
- |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold29073 |
67627 |
67692 |
+ |
A-rich |
Low_complexity |
| scaffold29073 |
70089 |
70384 |
+ |
RS634 |
Unspecified |
| scaffold29073 |
71057 |
71082 |
+ |
(A)n |
Simple_repeat |
| scaffold29073 |
72283 |
72357 |
+ |
(TATTT)n |
Simple_repeat |
| scaffold29073 |
72401 |
72559 |
+ |
RS458 |
Unspecified |
| scaffold29073 |
72939 |
72958 |
+ |
(T)n |
Simple_repeat |
| scaffold29073 |
73364 |
73789 |
+ |
RS458 |
Unspecified |
| scaffold29073 |
77426 |
77458 |
+ |
(ATATC)n |
Simple_repeat |
| scaffold29073 |
77980 |
77996 |
+ |
(A)n |
Simple_repeat |
| scaffold29073 |
80223 |
80298 |
+ |
(AGCTG)n |
Simple_repeat |
| scaffold29073 |
80308 |
80407 |
+ |
(ATT)n |
Simple_repeat |
| scaffold29073 |
80459 |
80602 |
+ |
EnSpm-34_SBi |
DNA/CMC-EnSpm |
| scaffold29073 |
80534 |
80622 |
- |
DNA3-8_STu |
DNA |
| scaffold29073 |
80623 |
80727 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold29073 |
82251 |
82271 |
+ |
(A)n |
Simple_repeat |
| scaffold29073 |
83432 |
83473 |
+ |
(TGG)n |
Simple_repeat |
| scaffold29073 |
83494 |
83515 |
+ |
(T)n |
Simple_repeat |
| scaffold29073 |
83761 |
83869 |
+ |
RS106 |
Unspecified |
| scaffold29073 |
83870 |
84457 |
- |
PL509 |
Unspecified |
| scaffold29073 |
84456 |
84617 |
+ |
RS106 |
Unspecified |
| scaffold29073 |
84722 |
84743 |
+ |
(A)n |
Simple_repeat |
| scaffold29073 |
84763 |
85100 |
- |
RS7342 |
Unspecified |
| scaffold29073 |
85319 |
85380 |
+ |
(CTTCAA)n |
Simple_repeat |
| scaffold29073 |
86582 |
86920 |
- |
GYPSY3-I_MT |
LTR/Gypsy |
| scaffold29073 |
87226 |
87514 |
- |
GYPSY3-I_MT |
LTR/Gypsy |
| scaffold29073 |
87547 |
87850 |
- |
GYPSY3-I_MT |
LTR/Gypsy |
| scaffold29073 |
88750 |
88789 |
+ |
(TGT)n |
Simple_repeat |
| scaffold29073 |
89178 |
89313 |
+ |
RS12809 |
Unspecified |
| scaffold29073 |
90058 |
90473 |
+ |
RS2156 |
Unspecified |
| scaffold29073 |
90376 |
90605 |
+ |
RS4609 |
Unspecified |
| scaffold29073 |
90404 |
90578 |
+ |
RS9790 |
Unspecified |
| scaffold29073 |
90677 |
90939 |
- |
RS5013 |
Unspecified |
| scaffold29073 |
91658 |
91683 |
+ |
(TA)n |
Simple_repeat |
| scaffold29073 |
92096 |
92236 |
+ |
RS10156 |
Unspecified |
| scaffold29073 |
92260 |
92296 |
+ |
(CACCAC)n |
Simple_repeat |
| scaffold29073 |
92781 |
92982 |
+ |
RS7676 |
Unspecified |
| scaffold29073 |
94234 |
94490 |
+ |
RS9676 |
Unspecified |
| scaffold29073 |
94999 |
95035 |
+ |
(TTATT)n |
Simple_repeat |
| scaffold29073 |
95290 |
95348 |
+ |
(CTGTTGG)n |
Simple_repeat |
| scaffold29073 |
95350 |
95503 |
+ |
RS8760 |
Unspecified |
| scaffold29073 |
95516 |
95550 |
+ |
(TTGTGTG)n |
Simple_repeat |
| scaffold29073 |
95593 |
95642 |
+ |
(TTTATAG)n |
Simple_repeat |
| scaffold29073 |
95678 |
95799 |
- |
RS12199 |
Unspecified |
| scaffold29073 |
95838 |
96010 |
- |
RS4613 |
Unspecified |
| scaffold29073 |
96177 |
96313 |
- |
RS10819 |
Unspecified |
| scaffold29073 |
96421 |
96760 |
+ |
A-rich |
Low_complexity |
| scaffold29073 |
96421 |
96512 |
+ |
A-rich |
Low_complexity |
| scaffold29073 |
96483 |
96760 |
- |
RS4613 |
Unspecified |
| scaffold29073 |
96871 |
97059 |
+ |
RS3891 |
Unspecified |
| scaffold29073 |
97264 |
97509 |
+ |
RS12199 |
Unspecified |
| scaffold29073 |
97291 |
97526 |
+ |
RS12199 |
Unspecified |