scaffold30547 Repeat List
genome start end strand repeat-name repeat-class
scaffold30547 151 206 + A-rich Low_complexity
scaffold30547 292 313 + (GAT)n Simple_repeat
scaffold30547 1800 1847 + (TTCTT)n Simple_repeat
scaffold30547 2362 3594 + RS645 Unspecified
scaffold30547 3593 3815 + PL876 Unspecified
scaffold30547 3892 3953 + (ATT)n Simple_repeat
scaffold30547 5432 6703 - LINE LINE(TransposonPSI)
scaffold30547 5823 6450 - L1-5_STu LINE/L1
scaffold30547 6739 7601 - RS420 Unspecified
scaffold30547 7607 8571 - PL891 Unspecified
scaffold30547 7719 9010 - PL405 Unspecified
scaffold30547 9499 9708 + RS13321 Unspecified
scaffold30547 9987 10197 + RS13321 Unspecified
scaffold30547 10684 13570 + RIRE1_I-int LTR/Copia
scaffold30547 14848 14904 + A-rich Low_complexity
scaffold30547 15655 15762 + GYPSY3-I_MT LTR/Gypsy
scaffold30547 15827 16448 - PL909 Unspecified
scaffold30547 16603 16679 + A-rich Low_complexity
scaffold30547 16888 18197 + Gypsy-26_VV-I LTR/Gypsy
scaffold30547 18366 18547 + Gypsy-26_VV-I LTR/Gypsy
scaffold30547 18995 19816 + Gypsy-26_VV-I LTR/Gypsy
scaffold30547 20249 20616 + RS1819 Unspecified
scaffold30547 21304 21530 - RS3329 Unspecified
scaffold30547 21532 21721 - RS288 Unspecified
scaffold30547 21920 22230 - PL888 Unspecified
scaffold30547 24533 24978 - RS374 Unspecified
scaffold30547 25315 25336 + (A)n Simple_repeat
scaffold30547 27957 28215 - RS1377 Unspecified
scaffold30547 28215 28507 - RS3329 Unspecified
scaffold30547 29573 30308 - RS695 Unspecified
scaffold30547 29629 30259 - PL219 Unspecified
scaffold30547 30283 30897 - RS1210 Unspecified
scaffold30547 31101 31548 + RS3808 Unspecified
scaffold30547 31549 33604 - RS934 Unspecified
scaffold30547 33590 34216 + RS1210 Unspecified
scaffold30547 34102 34833 - RS756 Unspecified
scaffold30547 34152 34649 - RS4278 Unspecified
scaffold30547 34234 34860 + PL219 Unspecified
scaffold30547 34861 35331 + RS1496 Unspecified
scaffold30547 38254 38310 + A-rich Low_complexity
scaffold30547 38470 38581 - RS9125 Unspecified
scaffold30547 39409 39465 + A-rich Low_complexity
scaffold30547 40102 40368 + Copia25-PTR_I-int LTR/Copia
scaffold30547 40202 40368 + Copia25-PTR_I-int LTR/Copia
scaffold30547 41439 41577 - PL816 Unspecified
scaffold30547 41578 41807 - RS4 Unspecified
scaffold30547 42125 42145 + (A)n Simple_repeat
scaffold30547 45186 45213 + (T)n Simple_repeat
scaffold30547 45631 45683 + (TTAA)n Simple_repeat
scaffold30547 45930 45968 + (ATATTTC)n Simple_repeat
scaffold30547 46610 46874 + RS10 Unspecified
scaffold30547 46961 47068 - Copia-32-I_VV LTR/Copia
scaffold30547 47621 47873 + RS4 Unspecified
scaffold30547 48051 48119 + (AAT)n Simple_repeat
scaffold30547 48130 48198 + (TAA)n Simple_repeat
scaffold30547 48442 48544 + A-rich Low_complexity
scaffold30547 48681 48714 + (AAT)n Simple_repeat
scaffold30547 49089 49270 + RS79 Unspecified
scaffold30547 49445 49505 + (TTAT)n Simple_repeat
scaffold30547 49506 49572 + (TTAATTT)n Simple_repeat
scaffold30547 49573 49594 + (TTAT)n Simple_repeat
scaffold30547 49664 49967 - RS384 Unspecified
scaffold30547 51158 51179 + (T)n Simple_repeat
scaffold30547 51467 51502 + (A)n Simple_repeat
scaffold30547 51763 52090 - RS2862 Unspecified
scaffold30547 52323 52339 + (ATT)n Simple_repeat
scaffold30547 52436 53356 + RS1408 Unspecified
scaffold30547 53552 54215 + RS592 Unspecified
scaffold30547 53861 54463 + RS589 Unspecified
scaffold30547 54360 54498 + RS334 Unspecified
scaffold30547 55681 55733 + (TAATGA)n Simple_repeat
scaffold30547 56237 56316 + (TA)n Simple_repeat
scaffold30547 56511 56592 - MuDR-N9_SBi DNA/MULE-MuDR
scaffold30547 56624 56662 + (AATTTA)n Simple_repeat
scaffold30547 56922 57015 - RS4475 Unspecified
scaffold30547 57653 57754 - RS17 Unspecified
scaffold30547 57860 57879 + (A)n Simple_repeat
scaffold30547 58326 58348 + (T)n Simple_repeat
scaffold30547 58817 58853 + (ATAATT)n Simple_repeat
scaffold30547 59309 59332 + (TTATT)n Simple_repeat
scaffold30547 61383 61627 + RS4 Unspecified
scaffold30547 61975 61991 + (A)n Simple_repeat
scaffold30547 64024 64048 + (A)n Simple_repeat
scaffold30547 64175 64251 + (AATC)n Simple_repeat
scaffold30547 64737 64867 + (TCGGG)n Simple_repeat
scaffold30547 65019 65150 + (TCGGG)n Simple_repeat
scaffold30547 65439 65550 + RS1674 Unspecified
scaffold30547 66098 66124 + (AT)n Simple_repeat
scaffold30547 69892 70070 + (AATTG)n Simple_repeat
scaffold30547 70307 70398 + (TTCAGAAAAC)n Simple_repeat
scaffold30547 70417 70594 + EnSpm-34_SBi DNA/CMC-EnSpm
scaffold30547 70741 70778 + (AAAAATA)n Simple_repeat
scaffold30547 70779 70797 + A-rich Low_complexity
scaffold30547 70827 70872 + (ACTTCAGAAA)n Simple_repeat
scaffold30547 70889 71107 - RS7244 Unspecified
scaffold30547 71131 71230 + (TTTT)n Simple_repeat
scaffold30547 71131 71329 + (TTTT)n Simple_repeat
scaffold30547 71194 71329 - PL370 Unspecified
scaffold30547 73071 73115 + (TCGTG)n Simple_repeat
scaffold30547 73933 73953 + (T)n Simple_repeat
scaffold30547 75907 75937 + (TAATAT)n Simple_repeat
scaffold30547 76429 76464 + (TTCTCTC)n Simple_repeat
scaffold30547 76853 76909 + (ATGG)n Simple_repeat
scaffold30547 77475 77519 + (AATT)n Simple_repeat
scaffold30547 78114 78382 - LTR-1_SBi-LTR LTR
scaffold30547 79001 79142 + (AATATAT)n Simple_repeat
scaffold30547 79093 79142 + (AATATAT)n Simple_repeat
scaffold30547 79832 79871 + (AGCTGAA)n Simple_repeat
scaffold30547 80140 80431 + PL100 Unspecified
scaffold30547 80671 80694 + (A)n Simple_repeat
scaffold30547 81391 81420 + (AT)n Simple_repeat
scaffold30547 81945 82039 + LT1_EPa LTR?
scaffold30547 82125 82188 - Copia-82_GM-I LTR/Copia
scaffold30547 82333 82394 + (T)n Simple_repeat
scaffold30547 82736 82809 + A-rich Low_complexity
scaffold30547 82980 83070 - RS17262 Unspecified
scaffold30547 83003 83071 + RS4475 Unspecified
scaffold30547 84416 84456 + (AATTCTA)n Simple_repeat
scaffold30547 84755 84940 + (AT)n Simple_repeat
scaffold30547 84849 84940 + (AT)n Simple_repeat
scaffold30547 85391 85422 + (TTAT)n Simple_repeat
scaffold30547 86169 86263 + LT1_EPa LTR?
scaffold30547 86349 86585 - Copia-82_GM-I LTR/Copia
scaffold30547 87311 87470 + PL699 Unspecified
scaffold30547 87965 88015 + (GGT)n Simple_repeat
scaffold30547 88292 88378 + A-rich Low_complexity
scaffold30547 88378 88746 + RS614 Unspecified
scaffold30547 88881 88943 + (TTTAATTA)n Simple_repeat
scaffold30547 89036 89088 - RS15433 Unspecified
scaffold30547 89046 89187 + RS54 Unspecified
scaffold30547 89256 89280 + (ATT)n Simple_repeat
scaffold30547 89281 89355 + (T)n Simple_repeat
scaffold30547 89356 89369 + (ATT)n Simple_repeat
scaffold30547 89523 89987 - RS35 Unspecified
scaffold30547 90876 90955 + (ATA)n Simple_repeat
scaffold30547 92484 92509 + (TAAT)n Simple_repeat
scaffold30547 92701 92818 - RS16382 Unspecified
scaffold30547 92715 92818 + RS4475 Unspecified
scaffold30547 93056 93201 - RS452 Unspecified
scaffold30547 93622 93694 + STOWAWAY12_SB DNA/TcMar-Stowaway
scaffold30547 94045 94079 + (AAAAT)n Simple_repeat
scaffold30547 94478 94538 + (TTA)n Simple_repeat
scaffold30547 94878 94912 + (AATA)n Simple_repeat
scaffold30547 96172 96241 + (TA)n Simple_repeat
scaffold30547 96342 96376 + (TTC)n Simple_repeat
scaffold30547 96610 96664 - RS14955 Unspecified
scaffold30547 96685 96709 + (T)n Simple_repeat
scaffold30547 97078 97125 + (TAA)n Simple_repeat
scaffold30547 97564 97606 + (ATTAA)n Simple_repeat
scaffold30547 99221 99245 + (TAATA)n Simple_repeat
scaffold30547 99246 99252 + (TATTATA)n Simple_repeat
scaffold30547 99300 99502 - RS2452 Unspecified
scaffold30547 99506 99545 + A-rich Low_complexity
scaffold30547 99653 99678 + (T)n Simple_repeat
scaffold30547 101279 101567 + RS384 Unspecified
scaffold30547 101615 101643 + A-rich Low_complexity
scaffold30547 101793 101821 + (TAAT)n Simple_repeat
scaffold30547 102223 102312 + (TTTT)n Simple_repeat
scaffold30547 102329 102426 + (GGC)n Simple_repeat
scaffold30547 102434 102461 + (T)n Simple_repeat
scaffold30547 102507 102579 + (GGTGGC)n Simple_repeat
scaffold30547 102631 102798 + (TTTTT)n Simple_repeat
scaffold30547 102815 102847 + (GGT)n Simple_repeat
scaffold30547 103550 103620 + RS72 Unspecified
scaffold30547 103861 103955 - RS4475 Unspecified
scaffold30547 103957 104018 + (TTA)n Simple_repeat
scaffold30547 104354 104417 + (ATTAA)n Simple_repeat
scaffold30547 104922 104985 + A-rich Low_complexity
scaffold30547 105014 105047 + A-rich Low_complexity
scaffold30547 105116 105203 - RS1746 Unspecified
scaffold30547 105508 105531 + (ATAA)n Simple_repeat
scaffold30547 105955 106042 - RS962 Unspecified
scaffold30547 107041 107073 + (TTC)n Simple_repeat
scaffold30547 107476 107517 + A-rich Low_complexity
scaffold30547 108906 108925 + (A)n Simple_repeat
scaffold30547 109255 109340 + (GTTCA)n Simple_repeat
scaffold30547 109363 109380 + (TAT)n Simple_repeat
scaffold30547 109381 109485 + (TTCAG)n Simple_repeat
scaffold30547 109510 109537 + (T)n Simple_repeat
scaffold30547 110115 110146 + (T)n Simple_repeat
scaffold30547 110204 110374 - RS1587 Unspecified
scaffold30547 110430 110669 + PL631 Unspecified
scaffold30547 112898 112950 + (TTATAT)n Simple_repeat
scaffold30547 113919 113963 + (T)n Simple_repeat
scaffold30547 114190 114263 + (TTT)n Simple_repeat
scaffold30547 115130 115153 + (T)n Simple_repeat
scaffold30547 115199 115344 - RS8028 Unspecified
scaffold30547 115783 115965 + Copia-3_PTri-I LTR/Copia
scaffold30547 115883 115965 + Copia-3_PTri-I LTR/Copia
scaffold30547 115982 116649 + Copia-3_PTri-I LTR/Copia
scaffold30547 115982 116216 + Copia-3_PTri-I LTR/Copia
scaffold30547 116191 116649 - PL637 Unspecified
scaffold30547 116864 117063 - RS2452 Unspecified
scaffold30547 117066 117083 + (A)n Simple_repeat
scaffold30547 117826 117931 + RS43 Unspecified
scaffold30547 119203 119266 + RS1848 Unspecified
scaffold30547 119603 119649 + A-rich Low_complexity
scaffold30547 120098 120134 + (CAG)n Simple_repeat
scaffold30547 120287 120327 + (CAACAG)n Simple_repeat
scaffold30547 120351 120401 + (CGG)n Simple_repeat
scaffold30547 120428 120456 + (GGT)n Simple_repeat
scaffold30547 120457 120505 + (GGATGG)n Simple_repeat
scaffold30547 120649 120695 + (TAATGT)n Simple_repeat
scaffold30547 120700 120933 + (ATG)n Simple_repeat
scaffold30547 121074 121105 + (GTG)n Simple_repeat
scaffold30547 124929 124966 + (TGTTAAC)n Simple_repeat
scaffold30547 124990 125040 + (T)n Simple_repeat
scaffold30547 125254 125479 + RS10268 Unspecified
scaffold30547 125627 125668 + (T)n Simple_repeat
scaffold30547 125809 125840 + (T)n Simple_repeat
scaffold30547 126043 126190 + RS932 Unspecified
scaffold30547 126373 126491 - RS84 Unspecified
scaffold30547 126740 126793 + (ATTTATT)n Simple_repeat
scaffold30547 127626 127747 + (TTCTCCC)n Simple_repeat
scaffold30547 128562 128592 + (CTGTTT)n Simple_repeat
scaffold30547 128970 129225 - RS1 Unspecified
scaffold30547 129529 129603 - RS18111 Unspecified
scaffold30547 129543 129912 + RS16860 Unspecified
scaffold30547 131406 131427 + (T)n Simple_repeat
scaffold30547 132888 133101 + RS5356 Unspecified
scaffold30547 134536 135425 - PL563 Unspecified
scaffold30547 136330 136363 + (TA)n Simple_repeat
scaffold30547 136596 136664 + (AATGCT)n Simple_repeat
scaffold30547 139029 139547 + RS8875 Unspecified
scaffold30547 139782 139819 + (TTA)n Simple_repeat
scaffold30547 141794 141983 + PL334 Unspecified
scaffold30547 141861 142336 + PL350 Unspecified
scaffold30547 142455 142544 + A-rich Low_complexity
scaffold30547 142585 142634 + A-rich Low_complexity
scaffold30547 143339 143397 + A-rich Low_complexity
scaffold30547 143453 143513 + (TTATA)n Simple_repeat
scaffold30547 143689 144069 + (TTATT)n Simple_repeat
scaffold30547 144008 144069 + (TTATT)n Simple_repeat
scaffold30547 144460 144504 + (AGT)n Simple_repeat
scaffold30547 144780 144826 + A-rich Low_complexity
scaffold30547 145146 145190 + (ACC)n Simple_repeat
scaffold30547 145856 146404 + RS13658 Unspecified
scaffold30547 146917 146944 + (TATTT)n Simple_repeat
scaffold30547 147926 148031 - Helitron1 RC/Helitron
scaffold30547 148038 148334 - RS546 Unspecified
scaffold30547 148432 148683 - RS5208 Unspecified
scaffold30547 149086 149191 - Helitron1 RC/Helitron
scaffold30547 149198 149494 - RS546 Unspecified
scaffold30547 149589 149841 - RS5208 Unspecified
scaffold30547 150128 150416 - RS4355 Unspecified
scaffold30547 151012 151058 + (AATTTAA)n Simple_repeat
scaffold30547 151481 152143 + RS1108 Unspecified
scaffold30547 152144 152291 - Helitron1 RC/Helitron
scaffold30547 152545 152587 + (AACA)n Simple_repeat
scaffold30547 152903 153228 - HELMET4 RC/Helitron
scaffold30547 153473 153529 - Helitron4 RC/Helitron
scaffold30547 153554 153559 + (AATTA)n Simple_repeat
scaffold30547 153560 153607 + A-rich Low_complexity
scaffold30547 153608 153622 + (AATTA)n Simple_repeat
scaffold30547 157481 157583 + RS642 Unspecified
scaffold30547 157582 158325 - helitronORF helitronORF(TransposonPSI)
scaffold30547 157794 158084 - Helitron-5_ZM RC/Helitron
scaffold30547 158370 158751 - RS6908 Unspecified
scaffold30547 158456 158986 - RS9502 Unspecified
scaffold30547 159247 159545 + RS5538 Unspecified
scaffold30547 160098 160293 - RS4289 Unspecified
scaffold30547 161048 161086 + (AACAA)n Simple_repeat
scaffold30547 161915 161939 + (A)n Simple_repeat
scaffold30547 161915 162155 + (A)n Simple_repeat
scaffold30547 161927 162155 - RS3154 Unspecified
scaffold30547 162204 162219 + (GCTGTT)n Simple_repeat
scaffold30547 162220 162265 + (TGT)n Simple_repeat
scaffold30547 162266 162302 + (GCTGTT)n Simple_repeat
scaffold30547 162899 162932 + A-rich Low_complexity
scaffold30547 164660 164863 + RS14533 Unspecified
scaffold30547 165116 165150 + (ATTTGC)n Simple_repeat
scaffold30547 167082 167121 - RS1172 Unspecified
scaffold30547 167615 167642 + (A)n Simple_repeat
scaffold30547 167670 167680 + GA-rich Low_complexity
scaffold30547 167681 167713 + A-rich Low_complexity
scaffold30547 167714 167729 + GA-rich Low_complexity
scaffold30547 167862 168003 - RS3946 Unspecified
scaffold30547 168502 168539 - RS2518 Unspecified
scaffold30547 168539 168711 + PL143 Unspecified
scaffold30547 169377 169522 - PL558 Unspecified
scaffold30547 169377 169541 + PL73 Unspecified
scaffold30547 170001 170167 + RS13351 Unspecified
scaffold30547 172204 172329 + RS10103 Unspecified
scaffold30547 173690 173783 - L1-5_Mad LINE/L1
scaffold30547 178028 178328 + RS13915 Unspecified
scaffold30547 178613 178741 - RS5534 Unspecified
scaffold30547 178806 179084 - RS3154 Unspecified
scaffold30547 178873 179090 - RS1602 Unspecified
scaffold30547 179604 179773 + RS4802 Unspecified
scaffold30547 180387 180508 + RS11076 Unspecified
scaffold30547 188101 188138 + (T)n Simple_repeat
scaffold30547 188668 188808 - RS7643 Unspecified
scaffold30547 188750 189030 - RS2518 Unspecified
scaffold30547 189362 189380 + (A)n Simple_repeat
scaffold30547 189735 189794 + (TTTGTT)n Simple_repeat
scaffold30547 192796 192954 + RS15592 Unspecified
scaffold30547 193356 193386 + (AATTTG)n Simple_repeat
scaffold30547 194047 194243 + RS1233 Unspecified
scaffold30547 194766 195008 - RS4 Unspecified
scaffold30547 195814 195859 - RS2418 Unspecified
scaffold30547 195863 196105 - RS2418 Unspecified
scaffold30547 196481 196531 + (AAC)n Simple_repeat
scaffold30547 197939 198037 - SINE2-1_PD SINE/tRNA-RTE
scaffold30547 198678 198702 + (A)n Simple_repeat
scaffold30547 200984 201069 + (AAGCAC)n Simple_repeat
scaffold30547 201888 202635 - PL21 Unspecified
scaffold30547 202631 203308 + RS1941 Unspecified
scaffold30547 203305 203506 + RS1496 Unspecified
scaffold30547 203631 203740 - MUMT DNA/MULE-MuDR
scaffold30547 203790 203950 + RS6462 Unspecified
scaffold30547 205822 205935 - EnSpm-1_GM DNA/CMC-EnSpm
scaffold30547 206133 206802 - RS1172 Unspecified
scaffold30547 206496 206932 + RS215 Unspecified
scaffold30547 207098 207189 - Copia-83_PT-LTR LTR/Copia
scaffold30547 207272 207335 + (TTGAATG)n Simple_repeat
scaffold30547 207930 208221 - Gypsy-35_BD-I LTR/Gypsy
scaffold30547 207986 208221 - Gypsy-35_BD-I LTR/Gypsy
scaffold30547 208219 208630 + Gypsy-38_Mad-I LTR/Gypsy
scaffold30547 208779 208898 + Gypsy-41_Mad-I LTR/Gypsy
scaffold30547 208986 209927 + Gypsy-20_BRa-I LTR/Gypsy
scaffold30547 209932 210070 - PL19 Unspecified
scaffold30547 210146 210204 + Gypsy-92_ZM-I LTR/Gypsy
scaffold30547 210381 210554 + Gypsy-20_BRa-I LTR/Gypsy
scaffold30547 210661 210690 + (AGACA)n Simple_repeat