scaffold31041 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold31041 |
4 |
867 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold31041 |
7 |
623 |
- |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold31041 |
353 |
442 |
- |
Gypsy21-PTR_I-int |
LTR/Gypsy |
| scaffold31041 |
1325 |
2297 |
+ |
PL475 |
Unspecified |
| scaffold31041 |
3921 |
4022 |
+ |
PL452 |
Unspecified |
| scaffold31041 |
4478 |
4515 |
+ |
(CCGG)n |
Simple_repeat |
| scaffold31041 |
4733 |
4797 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold31041 |
5120 |
5478 |
+ |
RS2778 |
Unspecified |
| scaffold31041 |
5167 |
5472 |
+ |
PL489 |
Unspecified |
| scaffold31041 |
6555 |
6572 |
+ |
(A)n |
Simple_repeat |
| scaffold31041 |
7234 |
7343 |
+ |
(TTG)n |
Simple_repeat |
| scaffold31041 |
8632 |
8692 |
+ |
(TTCATT)n |
Simple_repeat |
| scaffold31041 |
8693 |
8941 |
- |
RS29 |
Unspecified |
| scaffold31041 |
8942 |
9185 |
+ |
RS4 |
Unspecified |
| scaffold31041 |
9182 |
9337 |
- |
RS29 |
Unspecified |
| scaffold31041 |
9370 |
9394 |
+ |
(T)n |
Simple_repeat |
| scaffold31041 |
10190 |
10242 |
- |
TOTO1_LP_LTR |
LTR/Copia |
| scaffold31041 |
10736 |
10788 |
+ |
A-rich |
Low_complexity |
| scaffold31041 |
12104 |
12133 |
+ |
(T)n |
Simple_repeat |
| scaffold31041 |
12415 |
12660 |
+ |
RS4 |
Unspecified |
| scaffold31041 |
13185 |
13222 |
+ |
(GGATAT)n |
Simple_repeat |
| scaffold31041 |
13505 |
13532 |
+ |
(T)n |
Simple_repeat |
| scaffold31041 |
13674 |
13769 |
+ |
(TGGATA)n |
Simple_repeat |
| scaffold31041 |
13815 |
13928 |
- |
COPIA1-I_OS |
LTR/Copia |
| scaffold31041 |
13929 |
13960 |
+ |
(TTTTCTT)n |
Simple_repeat |
| scaffold31041 |
13961 |
14106 |
- |
COPIA1-I_OS |
LTR/Copia |
| scaffold31041 |
14091 |
14269 |
- |
TORTL1 |
LTR/Copia |
| scaffold31041 |
14409 |
15110 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold31041 |
15843 |
16131 |
- |
COPIA-I_MT |
LTR/Copia |
| scaffold31041 |
16415 |
16469 |
+ |
A-rich |
Low_complexity |
| scaffold31041 |
16490 |
16639 |
- |
COPIA-I_MT |
LTR/Copia |
| scaffold31041 |
16640 |
16699 |
- |
TOTO1_LP_LTR |
LTR/Copia |
| scaffold31041 |
16919 |
16961 |
+ |
A-rich |
Low_complexity |
| scaffold31041 |
17193 |
17245 |
+ |
A-rich |
Low_complexity |
| scaffold31041 |
17400 |
17448 |
+ |
A-rich |
Low_complexity |
| scaffold31041 |
17517 |
17556 |
+ |
(AATCT)n |
Simple_repeat |
| scaffold31041 |
17661 |
17696 |
+ |
(AATT)n |
Simple_repeat |
| scaffold31041 |
17717 |
17942 |
- |
PL271 |
Unspecified |
| scaffold31041 |
17937 |
18097 |
+ |
PL271 |
Unspecified |
| scaffold31041 |
18582 |
18620 |
+ |
(AATATG)n |
Simple_repeat |
| scaffold31041 |
18982 |
19003 |
+ |
(T)n |
Simple_repeat |
| scaffold31041 |
19281 |
19421 |
+ |
(ATATTAA)n |
Simple_repeat |
| scaffold31041 |
19498 |
19531 |
+ |
A-rich |
Low_complexity |
| scaffold31041 |
20109 |
20201 |
+ |
(AAT)n |
Simple_repeat |
| scaffold31041 |
20109 |
20290 |
+ |
(AAT)n |
Simple_repeat |
| scaffold31041 |
20188 |
20290 |
+ |
RS84 |
Unspecified |
| scaffold31041 |
21210 |
21267 |
+ |
(A)n |
Simple_repeat |
| scaffold31041 |
21478 |
21722 |
- |
RS4 |
Unspecified |
| scaffold31041 |
21732 |
22105 |
- |
RS8 |
Unspecified |
| scaffold31041 |
23986 |
24175 |
- |
RS82 |
Unspecified |
| scaffold31041 |
24282 |
24335 |
+ |
A-rich |
Low_complexity |
| scaffold31041 |
24737 |
24799 |
+ |
(GTG)n |
Simple_repeat |
| scaffold31041 |
25579 |
26037 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold31041 |
25856 |
25963 |
- |
Copia-63_GM-I |
LTR/Copia |
| scaffold31041 |
26074 |
26090 |
+ |
(T)n |
Simple_repeat |
| scaffold31041 |
26429 |
26474 |
+ |
A-rich |
Low_complexity |
| scaffold31041 |
26501 |
26703 |
- |
Copia-36_BD-I |
LTR/Copia |
| scaffold31041 |
27186 |
27238 |
+ |
A-rich |
Low_complexity |
| scaffold31041 |
27395 |
27443 |
+ |
A-rich |
Low_complexity |
| scaffold31041 |
27519 |
27558 |
+ |
(AATCT)n |
Simple_repeat |
| scaffold31041 |
27661 |
27693 |
+ |
(TCAA)n |
Simple_repeat |
| scaffold31041 |
27719 |
27836 |
- |
PL271 |
Unspecified |
| scaffold31041 |
27967 |
27999 |
+ |
(TCAA)n |
Simple_repeat |
| scaffold31041 |
28072 |
28133 |
+ |
PL501 |
Unspecified |
| scaffold31041 |
29274 |
29470 |
+ |
(AAT)n |
Simple_repeat |
| scaffold31041 |
29376 |
29470 |
+ |
(AAT)n |
Simple_repeat |
| scaffold31041 |
30058 |
30172 |
+ |
RS17927 |
Unspecified |
| scaffold31041 |
30171 |
30204 |
+ |
A-rich |
Low_complexity |
| scaffold31041 |
30205 |
30295 |
+ |
(AAT)n |
Simple_repeat |
| scaffold31041 |
30296 |
30310 |
+ |
A-rich |
Low_complexity |
| scaffold31041 |
30924 |
30956 |
+ |
(TTATT)n |
Simple_repeat |
| scaffold31041 |
31018 |
31074 |
- |
RS6025 |
Unspecified |
| scaffold31041 |
32524 |
32550 |
+ |
(AAAT)n |
Simple_repeat |
| scaffold31041 |
32691 |
32785 |
+ |
A-rich |
Low_complexity |
| scaffold31041 |
32691 |
32928 |
+ |
A-rich |
Low_complexity |
| scaffold31041 |
32770 |
32928 |
- |
RS13266 |
Unspecified |
| scaffold31041 |
33087 |
33191 |
+ |
TRAMET1 |
DNA/TcMar-Stowaway |
| scaffold31041 |
34173 |
34243 |
- |
L1-10_Mad |
LINE/L1 |
| scaffold31041 |
35054 |
35503 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold31041 |
35139 |
35440 |
- |
ATLINE1_9 |
LINE/L1 |
| scaffold31041 |
36343 |
36385 |
+ |
A-rich |
Low_complexity |
| scaffold31041 |
36728 |
37174 |
- |
RS458 |
Unspecified |
| scaffold31041 |
37644 |
37665 |
+ |
(A)n |
Simple_repeat |
| scaffold31041 |
37926 |
38101 |
- |
Helitron1_ZM |
RC/Helitron |
| scaffold31041 |
39174 |
39431 |
+ |
RS10272 |
Unspecified |
| scaffold31041 |
39968 |
40224 |
- |
RS1 |
Unspecified |
| scaffold31041 |
40230 |
40415 |
- |
RS82 |
Unspecified |
| scaffold31041 |
40508 |
40560 |
+ |
(AACTGAA)n |
Simple_repeat |
| scaffold31041 |
40881 |
41267 |
+ |
RS539 |
Unspecified |
| scaffold31041 |
41486 |
41508 |
+ |
(T)n |
Simple_repeat |
| scaffold31041 |
42133 |
42154 |
+ |
(A)n |
Simple_repeat |
| scaffold31041 |
42522 |
42584 |
+ |
(T)n |
Simple_repeat |
| scaffold31041 |
42668 |
42753 |
+ |
(ATTTA)n |
Simple_repeat |
| scaffold31041 |
43234 |
43259 |
+ |
(A)n |
Simple_repeat |
| scaffold31041 |
43473 |
43495 |
+ |
(T)n |
Simple_repeat |
| scaffold31041 |
43505 |
43625 |
- |
RS3558 |
Unspecified |
| scaffold31041 |
44354 |
44387 |
+ |
(AAT)n |
Simple_repeat |
| scaffold31041 |
44428 |
44526 |
+ |
RS972 |
Unspecified |
| scaffold31041 |
44866 |
44961 |
+ |
(ATATCC)n |
Simple_repeat |
| scaffold31041 |
45780 |
45824 |
+ |
(A)n |
Simple_repeat |
| scaffold31041 |
45859 |
46282 |
- |
RS458 |
Unspecified |
| scaffold31041 |
46624 |
46865 |
- |
RS4864 |
Unspecified |
| scaffold31041 |
46705 |
46924 |
+ |
RS3355 |
Unspecified |
| scaffold31041 |
46832 |
47025 |
- |
RS4164 |
Unspecified |
| scaffold31041 |
46894 |
47151 |
+ |
RS11936 |
Unspecified |
| scaffold31041 |
46951 |
47179 |
+ |
RS6025 |
Unspecified |
| scaffold31041 |
47227 |
47451 |
- |
RS3687 |
Unspecified |
| scaffold31041 |
48068 |
48109 |
+ |
(TATTT)n |
Simple_repeat |
| scaffold31041 |
48352 |
48375 |
+ |
(ATT)n |
Simple_repeat |
| scaffold31041 |
49312 |
49451 |
+ |
RS42 |
Unspecified |
| scaffold31041 |
49443 |
49552 |
+ |
RS10942 |
Unspecified |
| scaffold31041 |
50197 |
50452 |
+ |
RS1 |
Unspecified |
| scaffold31041 |
53268 |
53762 |
+ |
RS1275 |
Unspecified |
| scaffold31041 |
54396 |
54434 |
+ |
A-rich |
Low_complexity |
| scaffold31041 |
54489 |
54610 |
+ |
RS5 |
Unspecified |
| scaffold31041 |
54837 |
54862 |
+ |
(T)n |
Simple_repeat |
| scaffold31041 |
55270 |
55306 |
+ |
A-rich |
Low_complexity |
| scaffold31041 |
57460 |
57498 |
+ |
(CAT)n |
Simple_repeat |
| scaffold31041 |
57683 |
57730 |
+ |
A-rich |
Low_complexity |
| scaffold31041 |
58127 |
58152 |
+ |
(T)n |
Simple_repeat |
| scaffold31041 |
58770 |
58800 |
+ |
(TAAGTA)n |
Simple_repeat |
| scaffold31041 |
58837 |
58870 |
+ |
(AT)n |
Simple_repeat |
| scaffold31041 |
58953 |
59012 |
+ |
(GAT)n |
Simple_repeat |
| scaffold31041 |
59247 |
59265 |
+ |
(T)n |
Simple_repeat |
| scaffold31041 |
61278 |
62638 |
- |
RS465 |
Unspecified |
| scaffold31041 |
62773 |
63580 |
- |
RS2778 |
Unspecified |
| scaffold31041 |
64616 |
64648 |
+ |
(ATTTAT)n |
Simple_repeat |
| scaffold31041 |
64896 |
64954 |
+ |
GA-rich |
Low_complexity |
| scaffold31041 |
65054 |
65077 |
+ |
(T)n |
Simple_repeat |
| scaffold31041 |
66645 |
66683 |
+ |
(CTA)n |
Simple_repeat |
| scaffold31041 |
67319 |
67579 |
+ |
RS26 |
Unspecified |
| scaffold31041 |
67592 |
67797 |
+ |
RS128 |
Unspecified |
| scaffold31041 |
67958 |
68118 |
- |
RS2719 |
Unspecified |
| scaffold31041 |
67964 |
68137 |
+ |
RS233 |
Unspecified |
| scaffold31041 |
68320 |
70608 |
+ |
Copia-67_GM-I |
LTR/Copia |
| scaffold31041 |
68352 |
70608 |
+ |
Copia-67_GM-I |
LTR/Copia |
| scaffold31041 |
70722 |
70885 |
+ |
Copia-67_GM-I |
LTR/Copia |
| scaffold31041 |
70885 |
71480 |
- |
RS1600 |
Unspecified |
| scaffold31041 |
74365 |
74459 |
- |
RS16382 |
Unspecified |
| scaffold31041 |
74914 |
74936 |
+ |
(A)n |
Simple_repeat |
| scaffold31041 |
75027 |
75117 |
+ |
PL517 |
Unspecified |
| scaffold31041 |
75141 |
75196 |
+ |
(A)n |
Simple_repeat |
| scaffold31041 |
75830 |
76284 |
- |
PL773 |
Unspecified |
| scaffold31041 |
76469 |
76522 |
+ |
RS1874 |
Unspecified |
| scaffold31041 |
77713 |
77933 |
+ |
RS356 |
Unspecified |
| scaffold31041 |
78333 |
78389 |
+ |
A-rich |
Low_complexity |
| scaffold31041 |
78583 |
78633 |
+ |
(AAT)n |
Simple_repeat |
| scaffold31041 |
79306 |
79352 |
+ |
(GGC)n |
Simple_repeat |
| scaffold31041 |
79483 |
79600 |
+ |
(TTATAA)n |
Simple_repeat |
| scaffold31041 |
83412 |
83459 |
+ |
(ATAGAAC)n |
Simple_repeat |
| scaffold31041 |
84148 |
84422 |
- |
PL9 |
Unspecified |
| scaffold31041 |
85268 |
85287 |
+ |
(A)n |
Simple_repeat |
| scaffold31041 |
85718 |
85793 |
+ |
(ATCAA)n |
Simple_repeat |
| scaffold31041 |
86432 |
86470 |
+ |
(TTTTAA)n |
Simple_repeat |
| scaffold31041 |
86757 |
87115 |
- |
RS491 |
Unspecified |
| scaffold31041 |
87190 |
87224 |
+ |
(CCGGC)n |
Simple_repeat |
| scaffold31041 |
87394 |
87421 |
+ |
(T)n |
Simple_repeat |
| scaffold31041 |
87942 |
87977 |
+ |
A-rich |
Low_complexity |
| scaffold31041 |
88119 |
88157 |
+ |
(GTGA)n |
Simple_repeat |
| scaffold31041 |
89446 |
89871 |
+ |
PL3 |
Unspecified |
| scaffold31041 |
91708 |
91732 |
+ |
(ACAA)n |
Simple_repeat |
| scaffold31041 |
91733 |
91758 |
+ |
(A)n |
Simple_repeat |
| scaffold31041 |
92398 |
92658 |
- |
RS167 |
Unspecified |
| scaffold31041 |
93424 |
93598 |
- |
RS43 |
Unspecified |
| scaffold31041 |
93622 |
93854 |
+ |
PL536 |
Unspecified |
| scaffold31041 |
93690 |
94323 |
+ |
PL536 |
Unspecified |
| scaffold31041 |
93853 |
94306 |
+ |
PL53 |
Unspecified |
| scaffold31041 |
94319 |
94396 |
+ |
RS146 |
Unspecified |
| scaffold31041 |
94399 |
94457 |
- |
RS43 |
Unspecified |
| scaffold31041 |
95047 |
95113 |
+ |
(ATATT)n |
Simple_repeat |
| scaffold31041 |
95282 |
95504 |
- |
RS13348 |
Unspecified |
| scaffold31041 |
95542 |
95583 |
+ |
(AATA)n |
Simple_repeat |
| scaffold31041 |
96287 |
96531 |
- |
RS4 |
Unspecified |
| scaffold31041 |
96699 |
96961 |
- |
RS240 |
Unspecified |
| scaffold31041 |
97478 |
97494 |
+ |
A-rich |
Low_complexity |
| scaffold31041 |
97495 |
97524 |
+ |
(AAATAA)n |
Simple_repeat |
| scaffold31041 |
97525 |
97560 |
+ |
A-rich |
Low_complexity |
| scaffold31041 |
97756 |
97796 |
+ |
(CATATT)n |
Simple_repeat |
| scaffold31041 |
97867 |
97964 |
+ |
(ATT)n |
Simple_repeat |
| scaffold31041 |
98125 |
98215 |
+ |
(TTA)n |
Simple_repeat |
| scaffold31041 |
98888 |
98948 |
+ |
(TGG)n |
Simple_repeat |
| scaffold31041 |
99762 |
99810 |
+ |
A-rich |
Low_complexity |
| scaffold31041 |
100508 |
101003 |
- |
RS1230 |
Unspecified |
| scaffold31041 |
101540 |
101564 |
+ |
(T)n |
Simple_repeat |
| scaffold31041 |
102724 |
103212 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold31041 |
103260 |
103550 |
+ |
LTR2-ZM_LTR |
LTR |
| scaffold31041 |
103771 |
104038 |
+ |
LTR2-ZM_LTR |
LTR |
| scaffold31041 |
104039 |
104560 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold31041 |
104609 |
104803 |
+ |
PL306 |
Unspecified |
| scaffold31041 |
104653 |
105146 |
+ |
PL306 |
Unspecified |
| scaffold31041 |
106419 |
106901 |
+ |
RS552 |
Unspecified |
| scaffold31041 |
107732 |
108131 |
+ |
RS5713 |
Unspecified |
| scaffold31041 |
108185 |
109434 |
+ |
cacta |
cacta(TransposonPSI) |
| scaffold31041 |
108185 |
109240 |
+ |
cacta |
cacta(TransposonPSI) |
| scaffold31041 |
109213 |
109434 |
- |
RS8839 |
Unspecified |
| scaffold31041 |
110277 |
110314 |
+ |
(AACTAA)n |
Simple_repeat |
| scaffold31041 |
110574 |
110643 |
+ |
(CAAT)n |
Simple_repeat |
| scaffold31041 |
110863 |
110921 |
+ |
(AACCTAA)n |
Simple_repeat |
| scaffold31041 |
111012 |
111056 |
+ |
(CGGC)n |
Simple_repeat |
| scaffold31041 |
111889 |
111922 |
+ |
(TAA)n |
Simple_repeat |
| scaffold31041 |
111923 |
112067 |
+ |
RS7380 |
Unspecified |
| scaffold31041 |
112081 |
112101 |
+ |
(T)n |
Simple_repeat |
| scaffold31041 |
112101 |
112214 |
+ |
RS7380 |
Unspecified |
| scaffold31041 |
112225 |
112379 |
+ |
(TTTTT)n |
Simple_repeat |
| scaffold31041 |
112225 |
112313 |
+ |
(TTTTT)n |
Simple_repeat |
| scaffold31041 |
112277 |
112379 |
+ |
RS7240 |
Unspecified |
| scaffold31041 |
113163 |
113216 |
+ |
A-rich |
Low_complexity |
| scaffold31041 |
113278 |
113395 |
- |
RS7380 |
Unspecified |
| scaffold31041 |
113523 |
113843 |
- |
RS14906 |
Unspecified |
| scaffold31041 |
114899 |
115022 |
- |
RS2198 |
Unspecified |
| scaffold31041 |
115789 |
115823 |
+ |
(TTAATA)n |
Simple_repeat |
| scaffold31041 |
116490 |
116545 |
+ |
(A)n |
Simple_repeat |
| scaffold31041 |
116597 |
116620 |
+ |
(T)n |
Simple_repeat |
| scaffold31041 |
116698 |
116733 |
+ |
(T)n |
Simple_repeat |
| scaffold31041 |
116981 |
117569 |
+ |
PL117 |
Unspecified |
| scaffold31041 |
118130 |
118327 |
- |
PL560 |
Unspecified |
| scaffold31041 |
118761 |
118835 |
+ |
(AAT)n |
Simple_repeat |
| scaffold31041 |
119213 |
119341 |
+ |
RS13241 |
Unspecified |
| scaffold31041 |
119228 |
119395 |
+ |
RS13241 |
Unspecified |
| scaffold31041 |
119316 |
119422 |
+ |
RS13241 |
Unspecified |
| scaffold31041 |
119370 |
119439 |
+ |
RS13241 |
Unspecified |
| scaffold31041 |
121564 |
121608 |
+ |
(TAA)n |
Simple_repeat |
| scaffold31041 |
122273 |
122535 |
- |
RS356 |
Unspecified |
| scaffold31041 |
122886 |
122908 |
+ |
(T)n |
Simple_repeat |
| scaffold31041 |
123755 |
124212 |
+ |
PL352 |
Unspecified |
| scaffold31041 |
125167 |
125213 |
+ |
(AAGTA)n |
Simple_repeat |
| scaffold31041 |
127108 |
127249 |
+ |
RS4505 |
Unspecified |
| scaffold31041 |
128148 |
130642 |
- |
Copia-61_VV-I |
LTR/Copia |
| scaffold31041 |
130635 |
131173 |
- |
Copia-2_GM-I |
LTR/Copia |
| scaffold31041 |
131356 |
132031 |
- |
Copia-2_GM-I |
LTR/Copia |
| scaffold31041 |
133558 |
133922 |
- |
RS1195 |
Unspecified |
| scaffold31041 |
133558 |
133876 |
+ |
RS879 |
Unspecified |