scaffold3204 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold3204 |
227 |
301 |
+ |
(TTCACTA)n |
Simple_repeat |
| scaffold3204 |
937 |
985 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold3204 |
1058 |
1382 |
+ |
PL486 |
Unspecified |
| scaffold3204 |
3313 |
3368 |
+ |
(AATGA)n |
Simple_repeat |
| scaffold3204 |
3475 |
3575 |
+ |
RS2256 |
Unspecified |
| scaffold3204 |
3582 |
3634 |
+ |
GA-rich |
Low_complexity |
| scaffold3204 |
3694 |
3842 |
+ |
(GTT)n |
Simple_repeat |
| scaffold3204 |
3994 |
4534 |
+ |
PL799 |
Unspecified |
| scaffold3204 |
5250 |
5293 |
+ |
(TGGCGG)n |
Simple_repeat |
| scaffold3204 |
5399 |
5535 |
+ |
(GATGTT)n |
Simple_repeat |
| scaffold3204 |
5812 |
6182 |
+ |
RS8 |
Unspecified |
| scaffold3204 |
6873 |
6948 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold3204 |
7055 |
7268 |
+ |
RS11533 |
Unspecified |
| scaffold3204 |
7290 |
7384 |
+ |
(T)n |
Simple_repeat |
| scaffold3204 |
7492 |
7516 |
+ |
(GTG)n |
Simple_repeat |
| scaffold3204 |
7522 |
7545 |
+ |
(T)n |
Simple_repeat |
| scaffold3204 |
7646 |
7672 |
+ |
(A)n |
Simple_repeat |
| scaffold3204 |
8853 |
9015 |
- |
RS4216 |
Unspecified |
| scaffold3204 |
9104 |
9818 |
+ |
RS1338 |
Unspecified |
| scaffold3204 |
9821 |
10214 |
- |
RS4145 |
Unspecified |
| scaffold3204 |
10109 |
10256 |
- |
RS4803 |
Unspecified |
| scaffold3204 |
10286 |
10328 |
+ |
(GGACAC)n |
Simple_repeat |
| scaffold3204 |
10904 |
11140 |
+ |
(TTA)n |
Simple_repeat |
| scaffold3204 |
11104 |
11140 |
+ |
(TTA)n |
Simple_repeat |
| scaffold3204 |
11141 |
11180 |
+ |
(TAATTTA)n |
Simple_repeat |
| scaffold3204 |
13685 |
13715 |
+ |
(ACA)n |
Simple_repeat |
| scaffold3204 |
14536 |
14566 |
+ |
(TATT)n |
Simple_repeat |
| scaffold3204 |
16199 |
16243 |
+ |
(T)n |
Simple_repeat |
| scaffold3204 |
16199 |
16530 |
+ |
(T)n |
Simple_repeat |
| scaffold3204 |
16230 |
16530 |
+ |
RS4075 |
Unspecified |
| scaffold3204 |
17542 |
17567 |
+ |
(CA)n |
Simple_repeat |
| scaffold3204 |
17794 |
17844 |
+ |
PL571 |
Unspecified |
| scaffold3204 |
18898 |
18956 |
+ |
(AAC)n |
Simple_repeat |
| scaffold3204 |
20079 |
21482 |
+ |
gypsy |
gypsy(TransposonPSI) |
| scaffold3204 |
20135 |
21454 |
+ |
Gypsy-5_Pru-I |
LTR/Gypsy |
| scaffold3204 |
22125 |
23018 |
+ |
ltr_Roo |
ltr_Roo(TransposonPSI) |
| scaffold3204 |
22143 |
22558 |
+ |
RTIP1_I-int |
LTR/Gypsy |
| scaffold3204 |
22624 |
22739 |
+ |
RTIP1_I-int |
LTR/Gypsy |
| scaffold3204 |
23176 |
23199 |
+ |
Copia-85_ST-I |
LTR/Copia |
| scaffold3204 |
23200 |
23494 |
+ |
ATGP5A_I-int |
LTR/Gypsy |
| scaffold3204 |
23200 |
23266 |
+ |
ATGP5A_I-int |
LTR/Gypsy |
| scaffold3204 |
23255 |
23494 |
+ |
RS2055 |
Unspecified |
| scaffold3204 |
23576 |
23704 |
+ |
RS314 |
Unspecified |
| scaffold3204 |
23625 |
24004 |
+ |
RS1094 |
Unspecified |
| scaffold3204 |
23878 |
24258 |
+ |
RS1094 |
Unspecified |
| scaffold3204 |
24138 |
24396 |
+ |
RS12640 |
Unspecified |
| scaffold3204 |
24672 |
26078 |
+ |
RS824 |
Unspecified |
| scaffold3204 |
28068 |
28099 |
+ |
(CA)n |
Simple_repeat |
| scaffold3204 |
28313 |
29746 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold3204 |
28619 |
29410 |
- |
L1-1_PTr |
LINE/L1 |
| scaffold3204 |
31687 |
31899 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold3204 |
32313 |
32420 |
+ |
RS10491 |
Unspecified |
| scaffold3204 |
32316 |
32408 |
+ |
RS4475 |
Unspecified |
| scaffold3204 |
32585 |
32610 |
+ |
(T)n |
Simple_repeat |
| scaffold3204 |
32833 |
33818 |
- |
Copia-32-I_VV |
LTR/Copia |
| scaffold3204 |
34154 |
34182 |
+ |
(AT)n |
Simple_repeat |
| scaffold3204 |
34698 |
34732 |
+ |
(GGTCG)n |
Simple_repeat |
| scaffold3204 |
34887 |
34934 |
+ |
(ATT)n |
Simple_repeat |
| scaffold3204 |
35085 |
35599 |
- |
PL617 |
Unspecified |
| scaffold3204 |
35702 |
35730 |
+ |
(TATT)n |
Simple_repeat |
| scaffold3204 |
37503 |
37666 |
- |
RS1329 |
Unspecified |
| scaffold3204 |
37757 |
37786 |
+ |
(ATCA)n |
Simple_repeat |
| scaffold3204 |
38640 |
39090 |
+ |
PL654 |
Unspecified |
| scaffold3204 |
39200 |
39240 |
+ |
(T)n |
Simple_repeat |
| scaffold3204 |
39917 |
39974 |
+ |
(ATTAA)n |
Simple_repeat |
| scaffold3204 |
40226 |
40255 |
+ |
(T)n |
Simple_repeat |
| scaffold3204 |
41127 |
41172 |
- |
RN107_I-int |
LTR/Copia |
| scaffold3204 |
41996 |
42386 |
- |
PL260 |
Unspecified |
| scaffold3204 |
47766 |
48030 |
- |
RS1943 |
Unspecified |
| scaffold3204 |
48025 |
48092 |
+ |
RS2663 |
Unspecified |
| scaffold3204 |
48127 |
48207 |
+ |
PL289 |
Unspecified |
| scaffold3204 |
48294 |
48333 |
+ |
A-rich |
Low_complexity |
| scaffold3204 |
48510 |
48593 |
- |
RS250 |
Unspecified |
| scaffold3204 |
49404 |
49675 |
- |
RS10 |
Unspecified |
| scaffold3204 |
50806 |
50872 |
- |
RS237 |
Unspecified |
| scaffold3204 |
51046 |
51118 |
- |
RS727 |
Unspecified |
| scaffold3204 |
51103 |
51179 |
- |
RS17891 |
Unspecified |
| scaffold3204 |
51120 |
51183 |
+ |
RS16604 |
Unspecified |
| scaffold3204 |
51545 |
51712 |
+ |
RS1220 |
Unspecified |
| scaffold3204 |
53328 |
53395 |
+ |
A-rich |
Low_complexity |
| scaffold3204 |
53567 |
53695 |
- |
RS1812 |
Unspecified |
| scaffold3204 |
53763 |
54121 |
+ |
RS1188 |
Unspecified |
| scaffold3204 |
54181 |
54285 |
- |
RS3613 |
Unspecified |
| scaffold3204 |
54297 |
54339 |
+ |
(TTTCTTT)n |
Simple_repeat |
| scaffold3204 |
54346 |
54757 |
+ |
RS925 |
Unspecified |
| scaffold3204 |
54912 |
54948 |
+ |
A-rich |
Low_complexity |
| scaffold3204 |
55076 |
55112 |
+ |
(AATTA)n |
Simple_repeat |
| scaffold3204 |
55636 |
55730 |
+ |
(T)n |
Simple_repeat |
| scaffold3204 |
55918 |
55944 |
+ |
(T)n |
Simple_repeat |
| scaffold3204 |
55945 |
55991 |
+ |
(ATA)n |
Simple_repeat |
| scaffold3204 |
56259 |
56297 |
+ |
(AATTTTT)n |
Simple_repeat |
| scaffold3204 |
63680 |
63772 |
+ |
RS16382 |
Unspecified |
| scaffold3204 |
63680 |
63786 |
- |
RS4475 |
Unspecified |
| scaffold3204 |
66495 |
66527 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold3204 |
66882 |
66979 |
- |
ATRAN |
DNA? |
| scaffold3204 |
67560 |
67588 |
+ |
(AAATA)n |
Simple_repeat |
| scaffold3204 |
67853 |
67883 |
+ |
A-rich |
Low_complexity |
| scaffold3204 |
68043 |
68110 |
+ |
(TCCCC)n |
Simple_repeat |
| scaffold3204 |
68383 |
68430 |
+ |
(TA)n |
Simple_repeat |
| scaffold3204 |
68708 |
69345 |
+ |
PL700 |
Unspecified |
| scaffold3204 |
69444 |
69708 |
+ |
RS13608 |
Unspecified |
| scaffold3204 |
70077 |
70120 |
+ |
A-rich |
Low_complexity |
| scaffold3204 |
70915 |
70955 |
+ |
A-rich |
Low_complexity |
| scaffold3204 |
72862 |
72881 |
+ |
(TA)n |
Simple_repeat |
| scaffold3204 |
75084 |
75186 |
+ |
RS17105 |
Unspecified |
| scaffold3204 |
75181 |
75244 |
+ |
RS13085 |
Unspecified |
| scaffold3204 |
75189 |
75270 |
- |
PL517 |
Unspecified |
| scaffold3204 |
75809 |
75887 |
+ |
A-rich |
Low_complexity |
| scaffold3204 |
75959 |
75996 |
+ |
(GAT)n |
Simple_repeat |
| scaffold3204 |
76269 |
76371 |
- |
RS26 |
Unspecified |
| scaffold3204 |
76344 |
76470 |
+ |
RS4475 |
Unspecified |
| scaffold3204 |
76353 |
76464 |
- |
RS16382 |
Unspecified |
| scaffold3204 |
76462 |
76621 |
- |
RS26 |
Unspecified |
| scaffold3204 |
77417 |
77455 |
+ |
(AATAACC)n |
Simple_repeat |
| scaffold3204 |
77594 |
77625 |
+ |
A-rich |
Low_complexity |
| scaffold3204 |
77723 |
78107 |
- |
RS29 |
Unspecified |
| scaffold3204 |
78163 |
78202 |
+ |
(ATTCTTCA)n |
Simple_repeat |
| scaffold3204 |
78562 |
78609 |
+ |
A-rich |
Low_complexity |
| scaffold3204 |
79368 |
79410 |
+ |
(TGAAG)n |
Simple_repeat |
| scaffold3204 |
79428 |
79445 |
+ |
(AG)n |
Simple_repeat |
| scaffold3204 |
79506 |
79679 |
+ |
RS2651 |
Unspecified |
| scaffold3204 |
82445 |
82513 |
+ |
(AAT)n |
Simple_repeat |
| scaffold3204 |
83311 |
83349 |
+ |
A-rich |
Low_complexity |
| scaffold3204 |
83810 |
83855 |
+ |
RS873 |
Unspecified |
| scaffold3204 |
83815 |
83924 |
+ |
RS29 |
Unspecified |
| scaffold3204 |
83817 |
83909 |
+ |
RS16516 |
Unspecified |
| scaffold3204 |
84005 |
84027 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold3204 |
84660 |
84714 |
- |
RLG_scMaximus_1_1-I |
LTR/Copia |
| scaffold3204 |
84666 |
84757 |
+ |
(ATG)n |
Simple_repeat |
| scaffold3204 |
84692 |
84766 |
- |
ATCopia24I |
LTR/Copia |
| scaffold3204 |
84703 |
84783 |
+ |
CACTA_LP |
DNA/CMC-EnSpm |
| scaffold3204 |
85280 |
85468 |
- |
RS14279 |
Unspecified |
| scaffold3204 |
85391 |
85780 |
+ |
RS12136 |
Unspecified |
| scaffold3204 |
86062 |
86220 |
+ |
RS10730 |
Unspecified |
| scaffold3204 |
86619 |
86910 |
- |
RS4809 |
Unspecified |
| scaffold3204 |
86939 |
87191 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold3204 |
87502 |
87594 |
- |
Gypsy-72_GM-I |
LTR/Gypsy |
| scaffold3204 |
87710 |
88128 |
+ |
RS14393 |
Unspecified |
| scaffold3204 |
88169 |
88695 |
+ |
PL853 |
Unspecified |
| scaffold3204 |
88746 |
88988 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold3204 |
89045 |
89125 |
+ |
PL886 |
Unspecified |
| scaffold3204 |
89521 |
90050 |
+ |
RS23 |
Unspecified |
| scaffold3204 |
90088 |
90138 |
+ |
(CACAAG)n |
Simple_repeat |
| scaffold3204 |
94516 |
94577 |
+ |
(TTAAT)n |
Simple_repeat |
| scaffold3204 |
94702 |
94744 |
+ |
(TTA)n |
Simple_repeat |
| scaffold3204 |
95092 |
95456 |
- |
RS691 |
Unspecified |
| scaffold3204 |
95445 |
95700 |
+ |
RS614 |
Unspecified |
| scaffold3204 |
95706 |
96102 |
- |
RS798 |
Unspecified |
| scaffold3204 |
96101 |
96254 |
- |
RS798 |
Unspecified |
| scaffold3204 |
96510 |
96535 |
+ |
(TGA)n |
Simple_repeat |
| scaffold3204 |
97623 |
97672 |
+ |
(GAGCGG)n |
Simple_repeat |
| scaffold3204 |
97891 |
98468 |
- |
PL209 |
Unspecified |
| scaffold3204 |
98480 |
98517 |
+ |
(TTTGT)n |
Simple_repeat |
| scaffold3204 |
99960 |
100154 |
+ |
RS17751 |
Unspecified |
| scaffold3204 |
100307 |
100327 |
+ |
(A)n |
Simple_repeat |
| scaffold3204 |
101260 |
101365 |
+ |
RS14848 |
Unspecified |
| scaffold3204 |
101556 |
101678 |
+ |
RS18347 |
Unspecified |
| scaffold3204 |
102118 |
102172 |
+ |
(ATTTT)n |
Simple_repeat |
| scaffold3204 |
102698 |
102813 |
+ |
RS15320 |
Unspecified |
| scaffold3204 |
103964 |
104197 |
+ |
RS12980 |
Unspecified |
| scaffold3204 |
104477 |
105219 |
+ |
PL158 |
Unspecified |
| scaffold3204 |
105221 |
105334 |
+ |
RS10269 |
Unspecified |
| scaffold3204 |
107410 |
107441 |
+ |
(CAC)n |
Simple_repeat |
| scaffold3204 |
107863 |
107889 |
+ |
GA-rich |
Low_complexity |
| scaffold3204 |
108366 |
108610 |
- |
RS4 |
Unspecified |
| scaffold3204 |
108978 |
109033 |
+ |
GA-rich |
Low_complexity |
| scaffold3204 |
109314 |
109445 |
+ |
(TATTAT)n |
Simple_repeat |
| scaffold3204 |
109448 |
109509 |
+ |
(TAA)n |
Simple_repeat |
| scaffold3204 |
109511 |
109558 |
+ |
(TAT)n |
Simple_repeat |
| scaffold3204 |
109797 |
110024 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold3204 |
110099 |
110150 |
+ |
A-rich |
Low_complexity |
| scaffold3204 |
110299 |
110366 |
+ |
A-rich |
Low_complexity |
| scaffold3204 |
112230 |
112973 |
- |
PL733 |
Unspecified |
| scaffold3204 |
112230 |
113085 |
- |
RS2931 |
Unspecified |
| scaffold3204 |
114263 |
114282 |
+ |
(AC)n |
Simple_repeat |
| scaffold3204 |
114828 |
114960 |
+ |
(ATG)n |
Simple_repeat |
| scaffold3204 |
115082 |
115140 |
+ |
(TAT)n |
Simple_repeat |
| scaffold3204 |
115747 |
115783 |
+ |
A-rich |
Low_complexity |
| scaffold3204 |
115901 |
116087 |
+ |
RS2318 |
Unspecified |
| scaffold3204 |
116121 |
116292 |
+ |
RS12552 |
Unspecified |
| scaffold3204 |
116297 |
116547 |
+ |
RS10504 |
Unspecified |
| scaffold3204 |
116652 |
116675 |
+ |
(T)n |
Simple_repeat |
| scaffold3204 |
116837 |
116892 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold3204 |
116893 |
116936 |
+ |
(GTCGG)n |
Simple_repeat |
| scaffold3204 |
116937 |
117030 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold3204 |
117320 |
117595 |
+ |
(TCGGG)n |
Simple_repeat |
| scaffold3204 |
118173 |
118337 |
- |
PL255 |
Unspecified |
| scaffold3204 |
119335 |
119433 |
+ |
RS10703 |
Unspecified |
| scaffold3204 |
119434 |
119553 |
+ |
RS10703 |
Unspecified |
| scaffold3204 |
119548 |
119713 |
+ |
RS11868 |
Unspecified |
| scaffold3204 |
120526 |
120566 |
+ |
RS10703 |
Unspecified |
| scaffold3204 |
120567 |
120686 |
+ |
RS10703 |
Unspecified |
| scaffold3204 |
120681 |
120846 |
+ |
RS11868 |
Unspecified |
| scaffold3204 |
121721 |
121740 |
+ |
(A)n |
Simple_repeat |
| scaffold3204 |
123645 |
123685 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold3204 |
123645 |
123837 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold3204 |
123672 |
123837 |
- |
RS11868 |
Unspecified |
| scaffold3204 |
123841 |
123960 |
- |
RS10703 |
Unspecified |
| scaffold3204 |
123961 |
124059 |
- |
RS10703 |
Unspecified |
| scaffold3204 |
125374 |
125418 |
+ |
(AAAT)n |
Simple_repeat |
| scaffold3204 |
125451 |
125493 |
+ |
(GGTTGT)n |
Simple_repeat |
| scaffold3204 |
125926 |
125981 |
- |
Gypsy-10_Pru-LTR |
LTR/Gypsy |
| scaffold3204 |
126084 |
126861 |
- |
Gypsy-23_VV-I |
LTR/Gypsy |