scaffold3249 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold3249 |
1 |
112 |
+ |
RS3808 |
Unspecified |
| scaffold3249 |
683 |
714 |
+ |
(T)n |
Simple_repeat |
| scaffold3249 |
1571 |
1641 |
+ |
RS17 |
Unspecified |
| scaffold3249 |
1952 |
2003 |
+ |
(TAT)n |
Simple_repeat |
| scaffold3249 |
2162 |
2193 |
+ |
(GTA)n |
Simple_repeat |
| scaffold3249 |
2202 |
2214 |
+ |
(TAA)n |
Simple_repeat |
| scaffold3249 |
2215 |
2246 |
+ |
A-rich |
Low_complexity |
| scaffold3249 |
2414 |
2454 |
+ |
(ATTA)n |
Simple_repeat |
| scaffold3249 |
3188 |
3287 |
- |
RS4475 |
Unspecified |
| scaffold3249 |
3407 |
3667 |
+ |
RS16888 |
Unspecified |
| scaffold3249 |
3924 |
4148 |
+ |
RS2473 |
Unspecified |
| scaffold3249 |
4237 |
4683 |
+ |
RS2697 |
Unspecified |
| scaffold3249 |
4771 |
4798 |
+ |
(T)n |
Simple_repeat |
| scaffold3249 |
5174 |
5212 |
+ |
(ACAGTCA)n |
Simple_repeat |
| scaffold3249 |
5277 |
5487 |
- |
RS4 |
Unspecified |
| scaffold3249 |
5592 |
5607 |
+ |
(ATATAA)n |
Simple_repeat |
| scaffold3249 |
5608 |
5658 |
+ |
(TAATA)n |
Simple_repeat |
| scaffold3249 |
5659 |
5670 |
+ |
(ATATAA)n |
Simple_repeat |
| scaffold3249 |
5953 |
5997 |
+ |
A-rich |
Low_complexity |
| scaffold3249 |
6009 |
6265 |
- |
RS1 |
Unspecified |
| scaffold3249 |
6264 |
6477 |
+ |
A-rich |
Low_complexity |
| scaffold3249 |
6391 |
6477 |
+ |
A-rich |
Low_complexity |
| scaffold3249 |
6500 |
6558 |
+ |
(AATTTAA)n |
Simple_repeat |
| scaffold3249 |
6778 |
6889 |
- |
RS285 |
Unspecified |
| scaffold3249 |
7307 |
7340 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold3249 |
7688 |
7709 |
+ |
(A)n |
Simple_repeat |
| scaffold3249 |
7782 |
7836 |
+ |
(AAT)n |
Simple_repeat |
| scaffold3249 |
9448 |
9541 |
- |
RS1862 |
Unspecified |
| scaffold3249 |
10064 |
10081 |
+ |
(T)n |
Simple_repeat |
| scaffold3249 |
10960 |
10986 |
+ |
(GACCC)n |
Simple_repeat |
| scaffold3249 |
11192 |
11348 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold3249 |
11924 |
11974 |
+ |
(AGCTGAA)n |
Simple_repeat |
| scaffold3249 |
12110 |
12163 |
+ |
(ATT)n |
Simple_repeat |
| scaffold3249 |
12580 |
12613 |
+ |
A-rich |
Low_complexity |
| scaffold3249 |
13696 |
13848 |
- |
RS441 |
Unspecified |
| scaffold3249 |
17689 |
17825 |
- |
RS229 |
Unspecified |
| scaffold3249 |
17832 |
18338 |
- |
SZ-7_int-int |
LTR/Gypsy |
| scaffold3249 |
19045 |
19163 |
- |
RS1006 |
Unspecified |
| scaffold3249 |
19565 |
19592 |
+ |
(AATTA)n |
Simple_repeat |
| scaffold3249 |
20106 |
20306 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold3249 |
20107 |
20293 |
- |
Copia-5_ST-I |
LTR/Copia |
| scaffold3249 |
20703 |
20726 |
+ |
(TA)n |
Simple_repeat |
| scaffold3249 |
20778 |
21009 |
- |
RS7234 |
Unspecified |
| scaffold3249 |
21061 |
21085 |
+ |
(TA)n |
Simple_repeat |
| scaffold3249 |
21643 |
21686 |
+ |
(TTGGAT)n |
Simple_repeat |
| scaffold3249 |
23003 |
24036 |
- |
RS362 |
Unspecified |
| scaffold3249 |
27905 |
27936 |
+ |
A-rich |
Low_complexity |
| scaffold3249 |
35190 |
35295 |
+ |
RS285 |
Unspecified |
| scaffold3249 |
36100 |
36260 |
+ |
RS13085 |
Unspecified |
| scaffold3249 |
36105 |
36210 |
- |
RS17105 |
Unspecified |
| scaffold3249 |
36744 |
36871 |
+ |
SZ-25_LTR |
LTR/Copia |
| scaffold3249 |
39005 |
39065 |
- |
Gypsy-9-I_CR |
LTR/Gypsy |
| scaffold3249 |
39582 |
39754 |
+ |
PL645 |
Unspecified |
| scaffold3249 |
39585 |
39809 |
- |
PL346 |
Unspecified |
| scaffold3249 |
39808 |
39863 |
- |
PL346 |
Unspecified |
| scaffold3249 |
40266 |
40315 |
+ |
(ATCCATC)n |
Simple_repeat |
| scaffold3249 |
40439 |
40481 |
+ |
(ATTTA)n |
Simple_repeat |
| scaffold3249 |
40571 |
40612 |
+ |
(T)n |
Simple_repeat |
| scaffold3249 |
40713 |
40752 |
+ |
(T)n |
Simple_repeat |
| scaffold3249 |
42746 |
42767 |
+ |
(AAT)n |
Simple_repeat |
| scaffold3249 |
42809 |
42842 |
+ |
(TTAT)n |
Simple_repeat |
| scaffold3249 |
42841 |
43071 |
+ |
RS10 |
Unspecified |
| scaffold3249 |
44387 |
44472 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold3249 |
45579 |
45666 |
- |
RS16382 |
Unspecified |
| scaffold3249 |
46186 |
46221 |
+ |
(AAAT)n |
Simple_repeat |
| scaffold3249 |
46729 |
46931 |
- |
PL517 |
Unspecified |
| scaffold3249 |
47636 |
47711 |
+ |
(ATA)n |
Simple_repeat |
| scaffold3249 |
47710 |
47973 |
+ |
RS356 |
Unspecified |
| scaffold3249 |
47972 |
48018 |
+ |
(TAA)n |
Simple_repeat |
| scaffold3249 |
48481 |
48582 |
+ |
(TCATTT)n |
Simple_repeat |
| scaffold3249 |
49361 |
49393 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold3249 |
49454 |
49555 |
+ |
RS4475 |
Unspecified |
| scaffold3249 |
50100 |
50146 |
+ |
(ATATT)n |
Simple_repeat |
| scaffold3249 |
50208 |
50256 |
+ |
A-rich |
Low_complexity |
| scaffold3249 |
50520 |
50546 |
+ |
(T)n |
Simple_repeat |
| scaffold3249 |
50812 |
50840 |
+ |
(CTT)n |
Simple_repeat |
| scaffold3249 |
52508 |
52592 |
- |
HADES_TA |
DNA/TcMar-Stowaway |
| scaffold3249 |
53316 |
53341 |
+ |
(A)n |
Simple_repeat |
| scaffold3249 |
54596 |
54631 |
+ |
(TAT)n |
Simple_repeat |
| scaffold3249 |
54632 |
54671 |
+ |
(ATTTTT)n |
Simple_repeat |
| scaffold3249 |
55800 |
55816 |
+ |
(T)n |
Simple_repeat |
| scaffold3249 |
57376 |
57533 |
- |
RS1570 |
Unspecified |
| scaffold3249 |
57378 |
57561 |
+ |
RS1436 |
Unspecified |
| scaffold3249 |
57561 |
57735 |
- |
RS1362 |
Unspecified |
| scaffold3249 |
57762 |
58290 |
+ |
RS12573 |
Unspecified |
| scaffold3249 |
58300 |
58330 |
+ |
RS12573 |
Unspecified |
| scaffold3249 |
58328 |
58906 |
- |
RS3540 |
Unspecified |
| scaffold3249 |
58553 |
59654 |
+ |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold3249 |
58959 |
59654 |
+ |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold3249 |
59215 |
59560 |
+ |
MuDR-15_SBi |
DNA/MULE-MuDR |
| scaffold3249 |
59850 |
59893 |
+ |
(TGTTTTG)n |
Simple_repeat |
| scaffold3249 |
60249 |
60443 |
- |
RS12573 |
Unspecified |
| scaffold3249 |
60780 |
60990 |
- |
RS1233 |
Unspecified |
| scaffold3249 |
61731 |
61908 |
+ |
L1-1_STu |
LINE/L1 |
| scaffold3249 |
61773 |
61871 |
+ |
Sm1 |
LINE/Penelope |
| scaffold3249 |
61872 |
61917 |
+ |
MuDR-11_GM |
DNA/MULE-MuDR |
| scaffold3249 |
61935 |
61970 |
+ |
A-rich |
Low_complexity |
| scaffold3249 |
61989 |
62070 |
+ |
A-rich |
Low_complexity |
| scaffold3249 |
62503 |
62557 |
+ |
(A)n |
Simple_repeat |
| scaffold3249 |
62559 |
62783 |
+ |
(ATT)n |
Simple_repeat |
| scaffold3249 |
62732 |
62783 |
+ |
(ATT)n |
Simple_repeat |
| scaffold3249 |
62948 |
62989 |
+ |
RS880 |
Unspecified |
| scaffold3249 |
62991 |
63117 |
+ |
RS880 |
Unspecified |
| scaffold3249 |
63989 |
64040 |
+ |
(TATTT)n |
Simple_repeat |
| scaffold3249 |
64146 |
64221 |
+ |
(AAGGG)n |
Simple_repeat |
| scaffold3249 |
64645 |
64797 |
+ |
(CAGCT)n |
Simple_repeat |
| scaffold3249 |
65006 |
65074 |
+ |
(CAA)n |
Simple_repeat |
| scaffold3249 |
65887 |
65936 |
+ |
(GAT)n |
Simple_repeat |
| scaffold3249 |
67154 |
67219 |
+ |
PL517 |
Unspecified |
| scaffold3249 |
69248 |
69487 |
+ |
RS4 |
Unspecified |
| scaffold3249 |
69576 |
69697 |
- |
PL754 |
Unspecified |
| scaffold3249 |
71226 |
71264 |
+ |
(A)n |
Simple_repeat |
| scaffold3249 |
71417 |
71456 |
+ |
(TTATTT)n |
Simple_repeat |
| scaffold3249 |
71700 |
71734 |
+ |
(GAATC)n |
Simple_repeat |
| scaffold3249 |
72564 |
72634 |
+ |
(TCATAA)n |
Simple_repeat |
| scaffold3249 |
73339 |
73411 |
- |
RS41 |
Unspecified |
| scaffold3249 |
73393 |
73558 |
+ |
RS2386 |
Unspecified |
| scaffold3249 |
73418 |
73582 |
+ |
RS17211 |
Unspecified |
| scaffold3249 |
73677 |
73905 |
+ |
RS18 |
Unspecified |
| scaffold3249 |
74540 |
74672 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold3249 |
76228 |
76250 |
+ |
(TCA)n |
Simple_repeat |
| scaffold3249 |
80747 |
80912 |
+ |
RS18 |
Unspecified |
| scaffold3249 |
82526 |
82554 |
+ |
(A)n |
Simple_repeat |
| scaffold3249 |
84809 |
84910 |
+ |
MUDRAVI1 |
DNA/MULE-MuDR |
| scaffold3249 |
84828 |
84920 |
- |
EnSpm-34_SBi |
DNA/CMC-EnSpm |
| scaffold3249 |
85044 |
85080 |
+ |
(T)n |
Simple_repeat |
| scaffold3249 |
85225 |
85285 |
+ |
(A)n |
Simple_repeat |
| scaffold3249 |
85501 |
85679 |
+ |
SHAMET |
DNA/TcMar-Stowaway |
| scaffold3249 |
85725 |
85894 |
+ |
RS17860 |
Unspecified |
| scaffold3249 |
86896 |
87847 |
- |
PL771 |
Unspecified |
| scaffold3249 |
88081 |
88130 |
+ |
RS38 |
Unspecified |
| scaffold3249 |
88105 |
88149 |
- |
RS15316 |
Unspecified |
| scaffold3249 |
88118 |
88155 |
+ |
RS1874 |
Unspecified |
| scaffold3249 |
88130 |
88164 |
+ |
RS79 |
Unspecified |
| scaffold3249 |
88134 |
88311 |
+ |
RS38 |
Unspecified |
| scaffold3249 |
88245 |
88320 |
+ |
RS13501 |
Unspecified |
| scaffold3249 |
89320 |
89381 |
+ |
A-rich |
Low_complexity |
| scaffold3249 |
89619 |
89794 |
- |
RS10787 |
Unspecified |
| scaffold3249 |
89744 |
89865 |
- |
RS10787 |
Unspecified |
| scaffold3249 |
89758 |
89865 |
+ |
PL25 |
Unspecified |
| scaffold3249 |
90454 |
90500 |
- |
RS1931 |
Unspecified |
| scaffold3249 |
90498 |
90759 |
- |
RS365 |
Unspecified |
| scaffold3249 |
91623 |
91791 |
- |
RS445 |
Unspecified |
| scaffold3249 |
91901 |
92428 |
+ |
LINE |
LINE(TransposonPSI) |
| scaffold3249 |
91938 |
92036 |
+ |
L1-7_GM |
LINE/L1 |
| scaffold3249 |
92260 |
92403 |
+ |
LINE1-14_SBi |
LINE/L1 |
| scaffold3249 |
92887 |
93802 |
+ |
L1-15_GM |
LINE/L1 |
| scaffold3249 |
94727 |
94750 |
+ |
(A)n |
Simple_repeat |
| scaffold3249 |
94749 |
94832 |
- |
RS445 |
Unspecified |
| scaffold3249 |
94933 |
95026 |
+ |
LT1_EPa |
LTR? |
| scaffold3249 |
96034 |
96091 |
+ |
PL517 |
Unspecified |
| scaffold3249 |
96186 |
96462 |
+ |
RS1 |
Unspecified |
| scaffold3249 |
96801 |
96818 |
+ |
(A)n |
Simple_repeat |
| scaffold3249 |
97069 |
97304 |
- |
RS4 |
Unspecified |
| scaffold3249 |
98362 |
98393 |
+ |
(T)n |
Simple_repeat |
| scaffold3249 |
98655 |
98685 |
+ |
(ATTA)n |
Simple_repeat |
| scaffold3249 |
100254 |
100271 |
+ |
(A)n |
Simple_repeat |
| scaffold3249 |
100588 |
100623 |
+ |
(T)n |
Simple_repeat |
| scaffold3249 |
101246 |
101323 |
+ |
(AATTTTT)n |
Simple_repeat |
| scaffold3249 |
103048 |
103139 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold3249 |
104034 |
104116 |
+ |
(TTATA)n |
Simple_repeat |
| scaffold3249 |
104302 |
104358 |
+ |
(ATTAA)n |
Simple_repeat |
| scaffold3249 |
104565 |
104764 |
+ |
RS908 |
Unspecified |
| scaffold3249 |
104800 |
104825 |
+ |
(A)n |
Simple_repeat |
| scaffold3249 |
105942 |
105992 |
+ |
(ATCATT)n |
Simple_repeat |
| scaffold3249 |
106311 |
106339 |
+ |
(T)n |
Simple_repeat |
| scaffold3249 |
106536 |
106740 |
+ |
RS507 |
Unspecified |
| scaffold3249 |
108305 |
108326 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold3249 |
108811 |
108853 |
+ |
(ATT)n |
Simple_repeat |
| scaffold3249 |
109016 |
109067 |
+ |
(TATTA)n |
Simple_repeat |
| scaffold3249 |
109221 |
109250 |
+ |
(A)n |
Simple_repeat |
| scaffold3249 |
109307 |
109329 |
+ |
(TATT)n |
Simple_repeat |
| scaffold3249 |
109351 |
109375 |
+ |
(AATA)n |
Simple_repeat |
| scaffold3249 |
109804 |
109840 |
+ |
(AACGGTT)n |
Simple_repeat |
| scaffold3249 |
110227 |
110249 |
+ |
(T)n |
Simple_repeat |
| scaffold3249 |
110267 |
110370 |
+ |
(TTAACCG)n |
Simple_repeat |