scaffold33002 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold33002 |
1 |
791 |
- |
PL933 |
Unspecified |
| scaffold33002 |
906 |
947 |
+ |
(CCGG)n |
Simple_repeat |
| scaffold33002 |
3212 |
4308 |
+ |
RS118 |
Unspecified |
| scaffold33002 |
4408 |
4447 |
+ |
(TATG)n |
Simple_repeat |
| scaffold33002 |
4564 |
4617 |
+ |
(GTAT)n |
Simple_repeat |
| scaffold33002 |
5339 |
5790 |
+ |
RS3015 |
Unspecified |
| scaffold33002 |
5885 |
6171 |
+ |
RS5890 |
Unspecified |
| scaffold33002 |
6071 |
6237 |
- |
RS4244 |
Unspecified |
| scaffold33002 |
6274 |
6429 |
+ |
PL321 |
Unspecified |
| scaffold33002 |
10676 |
10918 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold33002 |
14622 |
14805 |
- |
PL871 |
Unspecified |
| scaffold33002 |
14865 |
14936 |
- |
RS2490 |
Unspecified |
| scaffold33002 |
15213 |
15479 |
+ |
RS13680 |
Unspecified |
| scaffold33002 |
15493 |
15687 |
+ |
RS2192 |
Unspecified |
| scaffold33002 |
15821 |
16071 |
+ |
RS6829 |
Unspecified |
| scaffold33002 |
15854 |
16108 |
+ |
RS3456 |
Unspecified |
| scaffold33002 |
16120 |
16175 |
+ |
Gypsy-193_ZM-I |
LTR/Gypsy |
| scaffold33002 |
16292 |
16350 |
+ |
(TAA)n |
Simple_repeat |
| scaffold33002 |
17069 |
17105 |
+ |
(GCTGTG)n |
Simple_repeat |
| scaffold33002 |
17866 |
17952 |
+ |
(ATG)n |
Simple_repeat |
| scaffold33002 |
18575 |
18659 |
+ |
PL823 |
Unspecified |
| scaffold33002 |
18658 |
18850 |
- |
RS799 |
Unspecified |
| scaffold33002 |
20026 |
20075 |
+ |
A-rich |
Low_complexity |
| scaffold33002 |
20249 |
21073 |
- |
PL678 |
Unspecified |
| scaffold33002 |
21074 |
21954 |
- |
RS57 |
Unspecified |
| scaffold33002 |
21956 |
22559 |
+ |
RS642 |
Unspecified |
| scaffold33002 |
24031 |
24109 |
+ |
(TA)n |
Simple_repeat |
| scaffold33002 |
24031 |
24085 |
+ |
(TA)n |
Simple_repeat |
| scaffold33002 |
24068 |
24109 |
- |
RS14 |
Unspecified |
| scaffold33002 |
26074 |
26172 |
+ |
TEKAY_ZM-int |
LTR/Gypsy |
| scaffold33002 |
26342 |
26416 |
+ |
TEKAY_ZM-int |
LTR/Gypsy |
| scaffold33002 |
26571 |
27916 |
+ |
DEA1 |
LTR/Gypsy |
| scaffold33002 |
28181 |
29471 |
+ |
GYPOT1_I-int |
LTR/Gypsy |
| scaffold33002 |
29491 |
29568 |
+ |
GYPOT1_I-int |
LTR/Gypsy |
| scaffold33002 |
29886 |
29947 |
+ |
(ATTTCT)n |
Simple_repeat |
| scaffold33002 |
30136 |
30169 |
+ |
(ATTTTT)n |
Simple_repeat |
| scaffold33002 |
30423 |
30498 |
+ |
(ATAC)n |
Simple_repeat |
| scaffold33002 |
30548 |
30609 |
+ |
(ATCTTC)n |
Simple_repeat |
| scaffold33002 |
30762 |
31583 |
+ |
LINE |
LINE(TransposonPSI) |
| scaffold33002 |
32540 |
32762 |
- |
RS6195 |
Unspecified |
| scaffold33002 |
33077 |
33142 |
+ |
A-rich |
Low_complexity |
| scaffold33002 |
33169 |
33208 |
+ |
(TTTTAT)n |
Simple_repeat |
| scaffold33002 |
33681 |
33765 |
+ |
A-rich |
Low_complexity |
| scaffold33002 |
33681 |
34425 |
+ |
A-rich |
Low_complexity |
| scaffold33002 |
33681 |
34269 |
+ |
A-rich |
Low_complexity |
| scaffold33002 |
33742 |
34269 |
+ |
PL866 |
Unspecified |
| scaffold33002 |
33746 |
34425 |
- |
PL39 |
Unspecified |
| scaffold33002 |
35454 |
35508 |
+ |
(TATT)n |
Simple_repeat |
| scaffold33002 |
35877 |
35986 |
- |
RS14 |
Unspecified |
| scaffold33002 |
35987 |
36401 |
+ |
PL618 |
Unspecified |
| scaffold33002 |
38465 |
38562 |
+ |
(ATA)n |
Simple_repeat |
| scaffold33002 |
39799 |
39854 |
+ |
A-rich |
Low_complexity |
| scaffold33002 |
40299 |
40318 |
+ |
(T)n |
Simple_repeat |
| scaffold33002 |
42097 |
42148 |
+ |
(CGC)n |
Simple_repeat |
| scaffold33002 |
43570 |
43627 |
+ |
(AATTTTG)n |
Simple_repeat |
| scaffold33002 |
43829 |
43943 |
+ |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold33002 |
44718 |
44777 |
+ |
(TTATAAC)n |
Simple_repeat |
| scaffold33002 |
44966 |
45003 |
+ |
A-rich |
Low_complexity |
| scaffold33002 |
45090 |
45134 |
+ |
A-rich |
Low_complexity |
| scaffold33002 |
45180 |
45241 |
+ |
(TAT)n |
Simple_repeat |
| scaffold33002 |
45357 |
46110 |
- |
PL166 |
Unspecified |
| scaffold33002 |
46111 |
46857 |
- |
RS369 |
Unspecified |
| scaffold33002 |
46854 |
46910 |
- |
PL570 |
Unspecified |
| scaffold33002 |
47174 |
47623 |
+ |
RS4863 |
Unspecified |
| scaffold33002 |
47974 |
48046 |
+ |
A-rich |
Low_complexity |
| scaffold33002 |
48239 |
48384 |
- |
PL753 |
Unspecified |
| scaffold33002 |
48855 |
48901 |
+ |
(T)n |
Simple_repeat |
| scaffold33002 |
49117 |
49152 |
+ |
(TAT)n |
Simple_repeat |
| scaffold33002 |
49322 |
49461 |
+ |
RS191 |
Unspecified |
| scaffold33002 |
49550 |
49659 |
+ |
(CCA)n |
Simple_repeat |
| scaffold33002 |
50046 |
50170 |
+ |
RS15073 |
Unspecified |
| scaffold33002 |
52457 |
52556 |
+ |
RS9789 |
Unspecified |
| scaffold33002 |
54165 |
54593 |
- |
RS8469 |
Unspecified |
| scaffold33002 |
54520 |
54675 |
+ |
RS2074 |
Unspecified |
| scaffold33002 |
54743 |
54977 |
+ |
RS8193 |
Unspecified |
| scaffold33002 |
56101 |
56126 |
- |
Copia-90_Mad-I |
LTR/Copia |
| scaffold33002 |
56127 |
56195 |
- |
ATGP5A_I-int |
LTR/Gypsy |
| scaffold33002 |
56297 |
56406 |
- |
Atlantys2_I-int |
LTR/Gypsy |
| scaffold33002 |
56642 |
56766 |
- |
Atlantys2_I-int |
LTR/Gypsy |
| scaffold33002 |
56824 |
57231 |
- |
Gypsy-5_Pru-I |
LTR/Gypsy |
| scaffold33002 |
57218 |
57300 |
- |
Gypsy-5_Pru-I |
LTR/Gypsy |
| scaffold33002 |
57936 |
59003 |
- |
Gypsy-5_Pru-I |
LTR/Gypsy |
| scaffold33002 |
59009 |
59167 |
- |
Gypsy-29_Mad-I |
LTR/Gypsy |
| scaffold33002 |
59192 |
59521 |
- |
gypsy |
gypsy(TransposonPSI) |
| scaffold33002 |
59217 |
59436 |
- |
Gypsy-29_Mad-I |
LTR/Gypsy |
| scaffold33002 |
59540 |
60968 |
- |
Gypsy-5_Pru-I |
LTR/Gypsy |
| scaffold33002 |
62156 |
62532 |
- |
Gypsy-29_Mad-I |
LTR/Gypsy |
| scaffold33002 |
63159 |
63738 |
- |
PL347 |
Unspecified |
| scaffold33002 |
63739 |
64138 |
- |
RS934 |
Unspecified |
| scaffold33002 |
65262 |
66103 |
+ |
RS2931 |
Unspecified |
| scaffold33002 |
65374 |
66103 |
+ |
PL733 |
Unspecified |
| scaffold33002 |
66150 |
66200 |
+ |
A-rich |
Low_complexity |
| scaffold33002 |
67028 |
67059 |
+ |
A-rich |
Low_complexity |
| scaffold33002 |
67808 |
68091 |
- |
LTR-1_SBi-LTR |
LTR |
| scaffold33002 |
69095 |
69118 |
+ |
(T)n |
Simple_repeat |
| scaffold33002 |
71330 |
71382 |
+ |
(AT)n |
Simple_repeat |
| scaffold33002 |
71590 |
71774 |
+ |
DNA3-11_Mad |
DNA/PIF-Harbinger |