scaffold3456 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold3456 |
608 |
634 |
+ |
(TGA)n |
Simple_repeat |
| scaffold3456 |
3321 |
3458 |
+ |
(CGTTCA)n |
Simple_repeat |
| scaffold3456 |
3424 |
3458 |
+ |
(CGTTCA)n |
Simple_repeat |
| scaffold3456 |
3592 |
3805 |
- |
RS3885 |
Unspecified |
| scaffold3456 |
3730 |
3989 |
- |
RS1828 |
Unspecified |
| scaffold3456 |
3902 |
4164 |
+ |
RS5424 |
Unspecified |
| scaffold3456 |
4446 |
4487 |
+ |
(GTA)n |
Simple_repeat |
| scaffold3456 |
4778 |
4822 |
+ |
A-rich |
Low_complexity |
| scaffold3456 |
5392 |
5941 |
- |
RS1374 |
Unspecified |
| scaffold3456 |
5810 |
5987 |
- |
RS1374 |
Unspecified |
| scaffold3456 |
8440 |
8511 |
+ |
(TA)n |
Simple_repeat |
| scaffold3456 |
10221 |
10249 |
- |
MuDR-6_SBi |
DNA/MULE-MuDR |
| scaffold3456 |
10377 |
10849 |
- |
RS2397 |
Unspecified |
| scaffold3456 |
10668 |
10934 |
- |
RS1583 |
Unspecified |
| scaffold3456 |
10957 |
11191 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold3456 |
11866 |
11898 |
+ |
(TA)n |
Simple_repeat |
| scaffold3456 |
11963 |
11998 |
+ |
(TATGTTG)n |
Simple_repeat |
| scaffold3456 |
12709 |
13051 |
+ |
RS2283 |
Unspecified |
| scaffold3456 |
12834 |
13142 |
- |
RS4029 |
Unspecified |
| scaffold3456 |
12960 |
13185 |
+ |
RS7125 |
Unspecified |
| scaffold3456 |
14149 |
14254 |
+ |
RS254 |
Unspecified |
| scaffold3456 |
15900 |
17031 |
- |
PL956 |
Unspecified |
| scaffold3456 |
17475 |
17546 |
+ |
A-rich |
Low_complexity |
| scaffold3456 |
18235 |
18344 |
+ |
Gypsy-I_MT |
LTR/Gypsy |
| scaffold3456 |
19052 |
19079 |
+ |
GA-rich |
Low_complexity |
| scaffold3456 |
19260 |
19329 |
+ |
A-rich |
Low_complexity |
| scaffold3456 |
19473 |
20912 |
+ |
gypsy |
gypsy(TransposonPSI) |
| scaffold3456 |
19503 |
20878 |
+ |
Gypsy-I_MT |
LTR/Gypsy |
| scaffold3456 |
20950 |
21112 |
+ |
Atlantys1_I-int |
LTR/Gypsy |
| scaffold3456 |
21635 |
22093 |
+ |
gypsy |
gypsy(TransposonPSI) |
| scaffold3456 |
21713 |
22089 |
+ |
Gypsy-I_MT |
LTR/Gypsy |
| scaffold3456 |
23161 |
24367 |
- |
PL888 |
Unspecified |
| scaffold3456 |
24393 |
25554 |
+ |
PL554 |
Unspecified |
| scaffold3456 |
25563 |
25581 |
+ |
(A)n |
Simple_repeat |
| scaffold3456 |
25637 |
26509 |
+ |
PL894 |
Unspecified |
| scaffold3456 |
26117 |
27519 |
+ |
A-rich |
Low_complexity |
| scaffold3456 |
27458 |
27519 |
+ |
A-rich |
Low_complexity |
| scaffold3456 |
28575 |
28622 |
+ |
(CTCGAA)n |
Simple_repeat |
| scaffold3456 |
29900 |
29932 |
+ |
(ACCTAC)n |
Simple_repeat |
| scaffold3456 |
29987 |
30062 |
+ |
(ACAAGC)n |
Simple_repeat |
| scaffold3456 |
31644 |
31777 |
+ |
RS254 |
Unspecified |
| scaffold3456 |
32117 |
32273 |
+ |
(ATG)n |
Simple_repeat |
| scaffold3456 |
32939 |
33307 |
+ |
(TG)n |
Simple_repeat |
| scaffold3456 |
33612 |
33771 |
- |
TPN1_IN |
DNA/CMC-EnSpm |
| scaffold3456 |
33867 |
33890 |
+ |
(T)n |
Simple_repeat |
| scaffold3456 |
33911 |
33946 |
+ |
(T)n |
Simple_repeat |
| scaffold3456 |
34497 |
35452 |
- |
RS7166 |
Unspecified |
| scaffold3456 |
35457 |
35489 |
- |
RS9462 |
Unspecified |
| scaffold3456 |
35482 |
35675 |
- |
RS9462 |
Unspecified |
| scaffold3456 |
35729 |
36069 |
- |
RS12354 |
Unspecified |
| scaffold3456 |
36223 |
36362 |
- |
RS9360 |
Unspecified |
| scaffold3456 |
36248 |
36562 |
+ |
RS4099 |
Unspecified |
| scaffold3456 |
36884 |
36924 |
+ |
GA-rich |
Low_complexity |
| scaffold3456 |
37107 |
37145 |
+ |
(TTAGATA)n |
Simple_repeat |
| scaffold3456 |
37568 |
37617 |
+ |
(TTA)n |
Simple_repeat |
| scaffold3456 |
39434 |
39464 |
+ |
(TC)n |
Simple_repeat |
| scaffold3456 |
40304 |
40331 |
+ |
(T)n |
Simple_repeat |
| scaffold3456 |
41218 |
41236 |
+ |
(GAT)n |
Simple_repeat |
| scaffold3456 |
44424 |
44811 |
+ |
RS17939 |
Unspecified |
| scaffold3456 |
45576 |
45606 |
+ |
(TTGTG)n |
Simple_repeat |
| scaffold3456 |
45839 |
45848 |
+ |
(TATT)n |
Simple_repeat |
| scaffold3456 |
45849 |
45886 |
+ |
(T)n |
Simple_repeat |
| scaffold3456 |
46008 |
46545 |
- |
PL753 |
Unspecified |
| scaffold3456 |
47158 |
47190 |
+ |
(GAA)n |
Simple_repeat |
| scaffold3456 |
47575 |
47607 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold3456 |
50217 |
50258 |
+ |
G-rich |
Low_complexity |
| scaffold3456 |
52144 |
52615 |
- |
Gypsy2-VV_I-int |
LTR/Gypsy |
| scaffold3456 |
53549 |
53625 |
+ |
(TTAGAA)n |
Simple_repeat |
| scaffold3456 |
53680 |
54175 |
- |
RS4278 |
Unspecified |
| scaffold3456 |
53715 |
54260 |
+ |
RS695 |
Unspecified |
| scaffold3456 |
53778 |
54259 |
- |
PL411 |
Unspecified |
| scaffold3456 |
54641 |
54710 |
+ |
A-rich |
Low_complexity |
| scaffold3456 |
55152 |
55193 |
+ |
(AACACAA)n |
Simple_repeat |
| scaffold3456 |
55542 |
55591 |
+ |
(ATTAAT)n |
Simple_repeat |
| scaffold3456 |
55772 |
55820 |
+ |
(ATTTTG)n |
Simple_repeat |
| scaffold3456 |
56147 |
56174 |
+ |
(ACATT)n |
Simple_repeat |
| scaffold3456 |
56172 |
56190 |
+ |
(ACACAA)n |
Simple_repeat |
| scaffold3456 |
56191 |
56213 |
+ |
(ACT)n |
Simple_repeat |
| scaffold3456 |
56214 |
56253 |
+ |
(ACACAA)n |
Simple_repeat |
| scaffold3456 |
56495 |
56924 |
+ |
PL494 |
Unspecified |
| scaffold3456 |
56542 |
57194 |
- |
PL919 |
Unspecified |
| scaffold3456 |
57208 |
57667 |
- |
PL334 |
Unspecified |
| scaffold3456 |
57565 |
58229 |
+ |
PL862 |
Unspecified |
| scaffold3456 |
57679 |
58243 |
- |
PL335 |
Unspecified |
| scaffold3456 |
57702 |
58465 |
- |
PL229 |
Unspecified |
| scaffold3456 |
58264 |
59047 |
- |
RS289 |
Unspecified |
| scaffold3456 |
64081 |
64182 |
+ |
Ogre-PT1_I-int |
LTR/Gypsy |
| scaffold3456 |
64980 |
65055 |
+ |
Ogre-VP1_I-int |
LTR/Gypsy |
| scaffold3456 |
65499 |
65582 |
- |
RS195 |
Unspecified |
| scaffold3456 |
67507 |
67796 |
+ |
RS247 |
Unspecified |
| scaffold3456 |
68094 |
68176 |
+ |
(CAAGCA)n |
Simple_repeat |
| scaffold3456 |
68759 |
68828 |
+ |
A-rich |
Low_complexity |
| scaffold3456 |
69269 |
69310 |
+ |
(AACACAA)n |
Simple_repeat |
| scaffold3456 |
69329 |
69566 |
+ |
PL355 |
Unspecified |
| scaffold3456 |
70110 |
70320 |
- |
RS190 |
Unspecified |
| scaffold3456 |
70319 |
70422 |
+ |
RS530 |
Unspecified |
| scaffold3456 |
70331 |
70448 |
- |
PL60 |
Unspecified |
| scaffold3456 |
70538 |
70579 |
+ |
G-rich |
Low_complexity |
| scaffold3456 |
71657 |
71678 |
+ |
(TTC)n |
Simple_repeat |
| scaffold3456 |
74348 |
74520 |
- |
Atlantys1_I-int |
LTR/Gypsy |
| scaffold3456 |
74489 |
75554 |
- |
Atlantys1_I-int |
LTR/Gypsy |
| scaffold3456 |
76239 |
77588 |
- |
Atlantys1_I-int |
LTR/Gypsy |
| scaffold3456 |
77832 |
77909 |
- |
Atlantys1_I-int |
LTR/Gypsy |
| scaffold3456 |
78079 |
78215 |
- |
Atlantys1_I-int |
LTR/Gypsy |
| scaffold3456 |
82006 |
82025 |
+ |
(CAT)n |
Simple_repeat |
| scaffold3456 |
82251 |
82295 |
+ |
(AAT)n |
Simple_repeat |
| scaffold3456 |
82313 |
82345 |
+ |
A-rich |
Low_complexity |
| scaffold3456 |
90760 |
90839 |
+ |
(A)n |
Simple_repeat |
| scaffold3456 |
91892 |
91940 |
+ |
(TTATTA)n |
Simple_repeat |
| scaffold3456 |
91942 |
91986 |
+ |
A-rich |
Low_complexity |
| scaffold3456 |
92103 |
92311 |
- |
RS1188 |
Unspecified |
| scaffold3456 |
92357 |
92622 |
+ |
RS1 |
Unspecified |
| scaffold3456 |
93229 |
93264 |
+ |
(T)n |
Simple_repeat |
| scaffold3456 |
93939 |
93962 |
+ |
(A)n |
Simple_repeat |
| scaffold3456 |
94153 |
94183 |
+ |
(T)n |
Simple_repeat |
| scaffold3456 |
94856 |
94878 |
+ |
(A)n |
Simple_repeat |
| scaffold3456 |
95087 |
96096 |
+ |
ATCopia28_I-int |
LTR/Copia |
| scaffold3456 |
98206 |
98250 |
+ |
(TGCTGT)n |
Simple_repeat |
| scaffold3456 |
98273 |
98336 |
+ |
(TGCTTG)n |
Simple_repeat |
| scaffold3456 |
98463 |
98979 |
- |
PL600 |
Unspecified |
| scaffold3456 |
99433 |
100348 |
+ |
RS351 |
Unspecified |
| scaffold3456 |
100850 |
100895 |
- |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold3456 |
101469 |
102065 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold3456 |
101477 |
102052 |
- |
Copia-10_BD-I |
LTR/Copia |
| scaffold3456 |
102216 |
103791 |
- |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold3456 |
103772 |
104251 |
- |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold3456 |
104747 |
105925 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |