scaffold3506 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold3506 |
2 |
137 |
+ |
(CGC)n |
Simple_repeat |
| scaffold3506 |
64 |
137 |
+ |
(CGC)n |
Simple_repeat |
| scaffold3506 |
200 |
300 |
+ |
(AATTG)n |
Simple_repeat |
| scaffold3506 |
1643 |
1681 |
+ |
(TGTATG)n |
Simple_repeat |
| scaffold3506 |
4015 |
4083 |
- |
RS17 |
Unspecified |
| scaffold3506 |
4462 |
4504 |
+ |
(TTG)n |
Simple_repeat |
| scaffold3506 |
4699 |
4722 |
+ |
(TA)n |
Simple_repeat |
| scaffold3506 |
4744 |
4811 |
+ |
(GTTTACA)n |
Simple_repeat |
| scaffold3506 |
4867 |
5004 |
- |
RS1172 |
Unspecified |
| scaffold3506 |
5068 |
5164 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold3506 |
5307 |
5403 |
+ |
RS4475 |
Unspecified |
| scaffold3506 |
6219 |
6482 |
+ |
RS356 |
Unspecified |
| scaffold3506 |
6431 |
6489 |
- |
RS18361 |
Unspecified |
| scaffold3506 |
6499 |
6767 |
+ |
RS1 |
Unspecified |
| scaffold3506 |
6953 |
7006 |
+ |
(ATT)n |
Simple_repeat |
| scaffold3506 |
7118 |
7160 |
+ |
(TACTTTT)n |
Simple_repeat |
| scaffold3506 |
7164 |
7192 |
+ |
(ATAAT)n |
Simple_repeat |
| scaffold3506 |
7709 |
7760 |
+ |
(TT)n |
Simple_repeat |
| scaffold3506 |
8873 |
8933 |
+ |
(TTT)n |
Simple_repeat |
| scaffold3506 |
11627 |
11778 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold3506 |
12753 |
12777 |
+ |
(TCACT)n |
Simple_repeat |
| scaffold3506 |
14264 |
14372 |
+ |
RS18041 |
Unspecified |
| scaffold3506 |
14899 |
15020 |
+ |
RS18085 |
Unspecified |
| scaffold3506 |
18356 |
18372 |
+ |
(T)n |
Simple_repeat |
| scaffold3506 |
19408 |
19511 |
+ |
HAT-N8_Mad |
DNA/hAT-Tag1 |
| scaffold3506 |
19515 |
19631 |
- |
PL531 |
Unspecified |
| scaffold3506 |
20342 |
20375 |
+ |
(GTATA)n |
Simple_repeat |
| scaffold3506 |
20370 |
20421 |
+ |
(TACAATT)n |
Simple_repeat |
| scaffold3506 |
20953 |
20981 |
+ |
(ACAACG)n |
Simple_repeat |
| scaffold3506 |
26753 |
27062 |
+ |
RS17188 |
Unspecified |
| scaffold3506 |
27066 |
27431 |
+ |
RS15740 |
Unspecified |
| scaffold3506 |
28373 |
28682 |
+ |
RS17188 |
Unspecified |
| scaffold3506 |
28686 |
29051 |
+ |
RS15740 |
Unspecified |
| scaffold3506 |
29920 |
29943 |
+ |
(A)n |
Simple_repeat |
| scaffold3506 |
30755 |
30804 |
+ |
(TTTTAT)n |
Simple_repeat |
| scaffold3506 |
30882 |
30928 |
+ |
(GGAT)n |
Simple_repeat |
| scaffold3506 |
31036 |
31074 |
+ |
(ATTAAC)n |
Simple_repeat |
| scaffold3506 |
31147 |
31219 |
+ |
RS2339 |
Unspecified |
| scaffold3506 |
33263 |
33304 |
+ |
(TATTTAT)n |
Simple_repeat |
| scaffold3506 |
33922 |
33959 |
+ |
(AATTCGA)n |
Simple_repeat |
| scaffold3506 |
34387 |
34426 |
- |
Gypsy-80-I_ZM |
LTR/Gypsy |
| scaffold3506 |
34875 |
34993 |
+ |
RS11411 |
Unspecified |
| scaffold3506 |
35143 |
35457 |
+ |
RS3806 |
Unspecified |
| scaffold3506 |
35851 |
35899 |
+ |
RS17188 |
Unspecified |
| scaffold3506 |
35935 |
36206 |
+ |
RS91 |
Unspecified |
| scaffold3506 |
38928 |
39112 |
+ |
RS326 |
Unspecified |
| scaffold3506 |
39112 |
39179 |
+ |
RS1361 |
Unspecified |
| scaffold3506 |
39181 |
39312 |
- |
RS9096 |
Unspecified |
| scaffold3506 |
39537 |
39721 |
- |
RS7814 |
Unspecified |
| scaffold3506 |
39760 |
39812 |
- |
RS7141 |
Unspecified |
| scaffold3506 |
39875 |
39925 |
+ |
RS7141 |
Unspecified |
| scaffold3506 |
41147 |
41195 |
+ |
(TTTAT)n |
Simple_repeat |
| scaffold3506 |
41615 |
41677 |
+ |
(TTATTGA)n |
Simple_repeat |
| scaffold3506 |
45525 |
45563 |
+ |
(GAATTA)n |
Simple_repeat |
| scaffold3506 |
46004 |
46057 |
+ |
(TACTTTA)n |
Simple_repeat |
| scaffold3506 |
46135 |
46164 |
+ |
(AATAC)n |
Simple_repeat |
| scaffold3506 |
46449 |
46556 |
- |
RS2367 |
Unspecified |
| scaffold3506 |
46807 |
46855 |
+ |
GA-rich |
Low_complexity |
| scaffold3506 |
46999 |
47064 |
+ |
(TTA)n |
Simple_repeat |
| scaffold3506 |
47405 |
47429 |
+ |
(T)n |
Simple_repeat |
| scaffold3506 |
47622 |
47654 |
+ |
(TTTTCT)n |
Simple_repeat |
| scaffold3506 |
47653 |
47692 |
+ |
(TTATAA)n |
Simple_repeat |
| scaffold3506 |
47700 |
47795 |
+ |
A-rich |
Low_complexity |
| scaffold3506 |
47843 |
47952 |
+ |
RS8903 |
Unspecified |
| scaffold3506 |
47960 |
48280 |
+ |
RS546 |
Unspecified |
| scaffold3506 |
48346 |
48434 |
+ |
RS3687 |
Unspecified |
| scaffold3506 |
48434 |
48649 |
- |
PL859 |
Unspecified |
| scaffold3506 |
48540 |
48709 |
- |
RS14472 |
Unspecified |
| scaffold3506 |
48723 |
48961 |
- |
RS6025 |
Unspecified |
| scaffold3506 |
48875 |
49091 |
+ |
RS4164 |
Unspecified |
| scaffold3506 |
49112 |
49141 |
+ |
(ATTTT)n |
Simple_repeat |
| scaffold3506 |
49145 |
49415 |
- |
RS1919 |
Unspecified |
| scaffold3506 |
49812 |
50235 |
+ |
RS458 |
Unspecified |
| scaffold3506 |
53217 |
53275 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold3506 |
53658 |
53870 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold3506 |
54643 |
54828 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold3506 |
55691 |
55732 |
+ |
(AT)n |
Simple_repeat |
| scaffold3506 |
56354 |
56384 |
+ |
(GAC)n |
Simple_repeat |
| scaffold3506 |
56403 |
56422 |
+ |
(T)n |
Simple_repeat |
| scaffold3506 |
56569 |
56607 |
+ |
(TGTG)n |
Simple_repeat |
| scaffold3506 |
56702 |
56751 |
+ |
(A)n |
Simple_repeat |
| scaffold3506 |
58074 |
58104 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold3506 |
58411 |
58430 |
+ |
(T)n |
Simple_repeat |
| scaffold3506 |
58603 |
58663 |
+ |
PIGY-I_PS |
LTR/Gypsy |
| scaffold3506 |
58752 |
58769 |
+ |
(A)n |
Simple_repeat |
| scaffold3506 |
60531 |
60594 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold3506 |
61595 |
61689 |
+ |
RS16382 |
Unspecified |
| scaffold3506 |
61950 |
61992 |
+ |
(TAA)n |
Simple_repeat |
| scaffold3506 |
62054 |
62099 |
+ |
(TAT)n |
Simple_repeat |
| scaffold3506 |
62236 |
62272 |
+ |
(ATAATA)n |
Simple_repeat |
| scaffold3506 |
62355 |
62499 |
+ |
RS115 |
Unspecified |
| scaffold3506 |
62690 |
62783 |
- |
RS15470 |
Unspecified |
| scaffold3506 |
62690 |
62769 |
- |
RS84 |
Unspecified |
| scaffold3506 |
63812 |
63861 |
+ |
(CGC)n |
Simple_repeat |
| scaffold3506 |
64179 |
64221 |
+ |
(TTATGA)n |
Simple_repeat |
| scaffold3506 |
64248 |
64358 |
+ |
(TTGTGAA)n |
Simple_repeat |
| scaffold3506 |
65386 |
65473 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold3506 |
65514 |
65565 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold3506 |
66331 |
66395 |
+ |
(ATTCA)n |
Simple_repeat |
| scaffold3506 |
66432 |
66476 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold3506 |
66477 |
66596 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold3506 |
66597 |
66699 |
+ |
(AACTG)n |
Simple_repeat |
| scaffold3506 |
66945 |
66983 |
+ |
(AAATCAA)n |
Simple_repeat |
| scaffold3506 |
67202 |
67319 |
+ |
(TCCGCC)n |
Simple_repeat |
| scaffold3506 |
75842 |
75916 |
- |
RS1258 |
Unspecified |
| scaffold3506 |
76002 |
76052 |
+ |
GA-rich |
Low_complexity |
| scaffold3506 |
76270 |
76307 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold3506 |
76405 |
76460 |
+ |
(AAT)n |
Simple_repeat |
| scaffold3506 |
77457 |
77645 |
+ |
RS549 |
Unspecified |
| scaffold3506 |
77718 |
77965 |
- |
RS145 |
Unspecified |
| scaffold3506 |
78203 |
78297 |
+ |
(ATT)n |
Simple_repeat |
| scaffold3506 |
78374 |
78446 |
+ |
(TAA)n |
Simple_repeat |
| scaffold3506 |
79323 |
79371 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold3506 |
79628 |
79651 |
+ |
(ATAA)n |
Simple_repeat |
| scaffold3506 |
80566 |
80594 |
+ |
(TGAG)n |
Simple_repeat |
| scaffold3506 |
80651 |
80695 |
+ |
(GTGAGT)n |
Simple_repeat |
| scaffold3506 |
81043 |
81099 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold3506 |
81132 |
81208 |
+ |
(AGTTC)n |
Simple_repeat |
| scaffold3506 |
82916 |
82946 |
+ |
(TATTT)n |
Simple_repeat |
| scaffold3506 |
83361 |
83396 |
+ |
(CT)n |
Simple_repeat |
| scaffold3506 |
83426 |
83500 |
+ |
(TAT)n |
Simple_repeat |
| scaffold3506 |
83659 |
83710 |
+ |
Gypsy-9-I_CR |
LTR/Gypsy |
| scaffold3506 |
83674 |
83711 |
- |
CEREBA_HV-int |
LTR/Gypsy |
| scaffold3506 |
83712 |
83724 |
+ |
(CAG)n |
Simple_repeat |
| scaffold3506 |
83763 |
83807 |
+ |
(ACG)n |
Simple_repeat |
| scaffold3506 |
83811 |
83838 |
+ |
(CAA)n |
Simple_repeat |
| scaffold3506 |
84409 |
84443 |
+ |
(GGT)n |
Simple_repeat |
| scaffold3506 |
84873 |
84901 |
+ |
(ACAA)n |
Simple_repeat |
| scaffold3506 |
84953 |
84974 |
+ |
(T)n |
Simple_repeat |
| scaffold3506 |
86138 |
86184 |
+ |
(ATGA)n |
Simple_repeat |
| scaffold3506 |
87297 |
87321 |
+ |
(A)n |
Simple_repeat |
| scaffold3506 |
87352 |
87395 |
+ |
(AATTT)n |
Simple_repeat |
| scaffold3506 |
87953 |
87987 |
+ |
(TTTTC)n |
Simple_repeat |
| scaffold3506 |
87988 |
88010 |
+ |
(TTTT)n |
Simple_repeat |
| scaffold3506 |
89046 |
89082 |
+ |
A-rich |
Low_complexity |
| scaffold3506 |
89188 |
89224 |
+ |
(TTTTAA)n |
Simple_repeat |
| scaffold3506 |
89311 |
89359 |
+ |
(TATTTT)n |
Simple_repeat |
| scaffold3506 |
89880 |
89909 |
+ |
(T)n |
Simple_repeat |
| scaffold3506 |
90235 |
90304 |
+ |
PL565 |
Unspecified |
| scaffold3506 |
93542 |
93806 |
+ |
RS970 |
Unspecified |
| scaffold3506 |
94080 |
94216 |
- |
L1-1_STu |
LINE/L1 |
| scaffold3506 |
94311 |
94412 |
+ |
(AGCTG)n |
Simple_repeat |
| scaffold3506 |
94454 |
94519 |
+ |
(AAT)n |
Simple_repeat |
| scaffold3506 |
94530 |
94638 |
+ |
(TAA)n |
Simple_repeat |
| scaffold3506 |
94821 |
94907 |
+ |
(TAT)n |
Simple_repeat |
| scaffold3506 |
94881 |
94907 |
+ |
(TAT)n |
Simple_repeat |
| scaffold3506 |
94910 |
94947 |
+ |
(AATAAT)n |
Simple_repeat |
| scaffold3506 |
94954 |
95110 |
+ |
(AGCTG)n |
Simple_repeat |
| scaffold3506 |
95607 |
95664 |
+ |
A-rich |
Low_complexity |
| scaffold3506 |
95862 |
95908 |
+ |
RS1248 |
Unspecified |
| scaffold3506 |
95905 |
96013 |
+ |
RS1248 |
Unspecified |
| scaffold3506 |
96009 |
96298 |
+ |
RS1746 |
Unspecified |
| scaffold3506 |
96080 |
96372 |
- |
RS1746 |
Unspecified |
| scaffold3506 |
96374 |
96657 |
+ |
RS1248 |
Unspecified |
| scaffold3506 |
96670 |
96712 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold3506 |
97175 |
97283 |
- |
ATRAN |
DNA? |
| scaffold3506 |
98246 |
98271 |
+ |
(CTA)n |
Simple_repeat |
| scaffold3506 |
98317 |
98374 |
+ |
A-rich |
Low_complexity |
| scaffold3506 |
98454 |
98527 |
- |
COPMET_LTR |
LTR/Copia |
| scaffold3506 |
100609 |
100627 |
+ |
(T)n |
Simple_repeat |
| scaffold3506 |
100910 |
100933 |
+ |
(T)n |
Simple_repeat |
| scaffold3506 |
100934 |
100960 |
+ |
(A)n |
Simple_repeat |
| scaffold3506 |
101072 |
101126 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold3506 |
101564 |
101591 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold3506 |
105215 |
105539 |
+ |
PL245 |
Unspecified |
| scaffold3506 |
105226 |
105579 |
- |
PL328 |
Unspecified |
| scaffold3506 |
105676 |
105782 |
+ |
A-rich |
Low_complexity |
| scaffold3506 |
106186 |
106213 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold3506 |
106214 |
106237 |
+ |
(ATTTATT)n |
Simple_repeat |
| scaffold3506 |
107547 |
107583 |
+ |
(A)n |
Simple_repeat |
| scaffold3506 |
108742 |
108790 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold3506 |
108829 |
108868 |
+ |
(TAATT)n |
Simple_repeat |
| scaffold3506 |
109353 |
109381 |
+ |
(ATTTA)n |
Simple_repeat |
| scaffold3506 |
109403 |
109445 |
+ |
(T)n |
Simple_repeat |
| scaffold3506 |
109874 |
109909 |
+ |
(CCG)n |
Simple_repeat |
| scaffold3506 |
109953 |
110025 |
+ |
(TATATA)n |
Simple_repeat |
| scaffold3506 |
110015 |
110060 |
+ |
(TATGTTT)n |
Simple_repeat |
| scaffold3506 |
113428 |
113465 |
+ |
RLG_scMaximus_1_7-I |
LTR/Copia |