scaffold3510 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold3510 |
223 |
260 |
+ |
GA-rich |
Low_complexity |
| scaffold3510 |
545 |
575 |
+ |
(AACAT)n |
Simple_repeat |
| scaffold3510 |
1818 |
1869 |
+ |
(TTTTAG)n |
Simple_repeat |
| scaffold3510 |
2332 |
2570 |
+ |
RS237 |
Unspecified |
| scaffold3510 |
2739 |
2764 |
+ |
(T)n |
Simple_repeat |
| scaffold3510 |
4203 |
4327 |
+ |
SZ-25_LTR |
LTR/Copia |
| scaffold3510 |
4565 |
4581 |
+ |
(T)n |
Simple_repeat |
| scaffold3510 |
5152 |
5293 |
- |
RS115 |
Unspecified |
| scaffold3510 |
6105 |
6176 |
+ |
(CGTGC)n |
Simple_repeat |
| scaffold3510 |
6245 |
6283 |
+ |
(T)n |
Simple_repeat |
| scaffold3510 |
6835 |
6880 |
+ |
(ATATTTC)n |
Simple_repeat |
| scaffold3510 |
8428 |
8484 |
+ |
ERIKA1_TM-LTR |
LTR/Gypsy |
| scaffold3510 |
8612 |
8801 |
- |
RS234 |
Unspecified |
| scaffold3510 |
8941 |
9009 |
+ |
Gypsy-196_ZM-I |
LTR/Gypsy |
| scaffold3510 |
9085 |
9147 |
+ |
LTR-1_SBi-LTR |
LTR |
| scaffold3510 |
9093 |
9190 |
- |
MIDWAY |
DNA/hAT-Tip100 |
| scaffold3510 |
9439 |
9556 |
+ |
LTR-1_SBi-LTR |
LTR |
| scaffold3510 |
9557 |
9765 |
+ |
LTR-1_SBi-LTR |
LTR |
| scaffold3510 |
10988 |
11630 |
- |
RS2548 |
Unspecified |
| scaffold3510 |
11862 |
11913 |
+ |
(TTTAT)n |
Simple_repeat |
| scaffold3510 |
12391 |
12438 |
+ |
(TTTGCT)n |
Simple_repeat |
| scaffold3510 |
14507 |
14568 |
+ |
(AAC)n |
Simple_repeat |
| scaffold3510 |
15728 |
17074 |
+ |
Gypsy-52_Mad-I |
LTR/Gypsy |
| scaffold3510 |
17107 |
17481 |
+ |
LINE |
LINE(TransposonPSI) |
| scaffold3510 |
17737 |
18630 |
+ |
ltr_Roo |
ltr_Roo(TransposonPSI) |
| scaffold3510 |
17767 |
18170 |
+ |
Gypsy-38_Mad-I |
LTR/Gypsy |
| scaffold3510 |
18235 |
18428 |
+ |
Gypsy-52_Mad-I |
LTR/Gypsy |
| scaffold3510 |
18812 |
18878 |
+ |
Gypsy-52_Mad-I |
LTR/Gypsy |
| scaffold3510 |
18879 |
18906 |
+ |
Copia-85_ST-I |
LTR/Copia |
| scaffold3510 |
19168 |
19277 |
+ |
PL827 |
Unspecified |
| scaffold3510 |
19224 |
19550 |
+ |
RS1094 |
Unspecified |
| scaffold3510 |
19426 |
19664 |
+ |
RS12640 |
Unspecified |
| scaffold3510 |
19521 |
19701 |
- |
RS11744 |
Unspecified |
| scaffold3510 |
20015 |
21416 |
+ |
RS824 |
Unspecified |
| scaffold3510 |
20396 |
21911 |
- |
PL666 |
Unspecified |
| scaffold3510 |
23209 |
23656 |
+ |
RS189 |
Unspecified |
| scaffold3510 |
24455 |
24560 |
+ |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold3510 |
24566 |
24654 |
+ |
(TATTCG)n |
Simple_repeat |
| scaffold3510 |
24802 |
25367 |
+ |
PL335 |
Unspecified |
| scaffold3510 |
25375 |
25787 |
+ |
PL334 |
Unspecified |
| scaffold3510 |
26828 |
26861 |
+ |
(TG)n |
Simple_repeat |
| scaffold3510 |
26868 |
27283 |
- |
RS1444 |
Unspecified |
| scaffold3510 |
28006 |
28194 |
+ |
PL156 |
Unspecified |
| scaffold3510 |
28455 |
28478 |
+ |
(TC)n |
Simple_repeat |
| scaffold3510 |
30343 |
30419 |
+ |
Gypsy-196_ZM-I |
LTR/Gypsy |
| scaffold3510 |
31999 |
32053 |
+ |
(TTGTTGA)n |
Simple_repeat |
| scaffold3510 |
32505 |
32556 |
+ |
(TTTAT)n |
Simple_repeat |
| scaffold3510 |
33120 |
33263 |
+ |
(AAC)n |
Simple_repeat |
| scaffold3510 |
33572 |
33621 |
+ |
(CCTCCGA)n |
Simple_repeat |
| scaffold3510 |
33630 |
33673 |
+ |
(CCTCTT)n |
Simple_repeat |
| scaffold3510 |
36847 |
36888 |
+ |
A-rich |
Low_complexity |
| scaffold3510 |
37298 |
37815 |
+ |
PL874 |
Unspecified |
| scaffold3510 |
37607 |
37853 |
- |
RS5643 |
Unspecified |
| scaffold3510 |
37805 |
38048 |
- |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold3510 |
37964 |
38048 |
- |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold3510 |
38742 |
38767 |
+ |
(GACCC)n |
Simple_repeat |
| scaffold3510 |
38826 |
38861 |
+ |
(ACCCG)n |
Simple_repeat |
| scaffold3510 |
38880 |
39575 |
+ |
RS608 |
Unspecified |
| scaffold3510 |
39481 |
39611 |
- |
RS2931 |
Unspecified |
| scaffold3510 |
40010 |
40055 |
+ |
A-rich |
Low_complexity |
| scaffold3510 |
40674 |
40787 |
+ |
(AAC)n |
Simple_repeat |
| scaffold3510 |
40942 |
41006 |
+ |
(ACC)n |
Simple_repeat |
| scaffold3510 |
41317 |
41369 |
+ |
(CTC)n |
Simple_repeat |
| scaffold3510 |
41375 |
41530 |
+ |
RS1648 |
Unspecified |
| scaffold3510 |
43040 |
43326 |
- |
RS14 |
Unspecified |
| scaffold3510 |
43319 |
43908 |
- |
RS57 |
Unspecified |
| scaffold3510 |
44659 |
44973 |
+ |
(CA)n |
Simple_repeat |
| scaffold3510 |
44659 |
44748 |
+ |
(CA)n |
Simple_repeat |
| scaffold3510 |
44719 |
44973 |
- |
RS2387 |
Unspecified |
| scaffold3510 |
45888 |
45969 |
+ |
PL564 |
Unspecified |
| scaffold3510 |
45987 |
46085 |
+ |
PL564 |
Unspecified |
| scaffold3510 |
46085 |
46231 |
- |
RS8311 |
Unspecified |
| scaffold3510 |
46243 |
46282 |
+ |
A-rich |
Low_complexity |
| scaffold3510 |
46470 |
46570 |
- |
RS1091 |
Unspecified |
| scaffold3510 |
46478 |
46590 |
- |
RS2387 |
Unspecified |
| scaffold3510 |
46651 |
46682 |
+ |
(ATTTTG)n |
Simple_repeat |
| scaffold3510 |
47248 |
47430 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold3510 |
47444 |
47956 |
- |
RS57 |
Unspecified |
| scaffold3510 |
47652 |
48295 |
+ |
PL889 |
Unspecified |
| scaffold3510 |
47931 |
48554 |
- |
RS39 |
Unspecified |
| scaffold3510 |
48142 |
48816 |
+ |
RS936 |
Unspecified |
| scaffold3510 |
49017 |
49258 |
- |
RS57 |
Unspecified |
| scaffold3510 |
49060 |
49255 |
+ |
RS936 |
Unspecified |
| scaffold3510 |
49672 |
50418 |
- |
PL66 |
Unspecified |
| scaffold3510 |
50482 |
50542 |
+ |
Gypsy-13_TA-I |
LTR/Gypsy |
| scaffold3510 |
50933 |
50980 |
+ |
A-rich |
Low_complexity |
| scaffold3510 |
51191 |
51334 |
+ |
(AAC)n |
Simple_repeat |
| scaffold3510 |
51643 |
51692 |
+ |
(CCTCCGA)n |
Simple_repeat |
| scaffold3510 |
51701 |
51744 |
+ |
(CCTCTT)n |
Simple_repeat |
| scaffold3510 |
53640 |
54154 |
+ |
(TTTTAT)n |
Simple_repeat |
| scaffold3510 |
53640 |
53798 |
+ |
(TTTTAT)n |
Simple_repeat |
| scaffold3510 |
53738 |
54154 |
+ |
PL839 |
Unspecified |
| scaffold3510 |
54508 |
54578 |
+ |
(ATTAACTT)n |
Simple_repeat |
| scaffold3510 |
54579 |
54590 |
+ |
(AATT)n |
Simple_repeat |
| scaffold3510 |
54861 |
54990 |
+ |
RS1154 |
Unspecified |
| scaffold3510 |
54886 |
55301 |
+ |
PL736 |
Unspecified |
| scaffold3510 |
55314 |
55396 |
+ |
(ATATTT)n |
Simple_repeat |
| scaffold3510 |
55661 |
55767 |
- |
PL166 |
Unspecified |
| scaffold3510 |
56068 |
56119 |
+ |
(AATTAGA)n |
Simple_repeat |
| scaffold3510 |
56520 |
56538 |
+ |
(A)n |
Simple_repeat |
| scaffold3510 |
56700 |
57217 |
+ |
PL874 |
Unspecified |
| scaffold3510 |
57226 |
57437 |
- |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold3510 |
57362 |
57437 |
- |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold3510 |
58145 |
58452 |
- |
PL816 |
Unspecified |
| scaffold3510 |
58453 |
59450 |
- |
PL816 |
Unspecified |
| scaffold3510 |
59451 |
59950 |
+ |
PL192 |
Unspecified |
| scaffold3510 |
59509 |
60004 |
+ |
RS2515 |
Unspecified |
| scaffold3510 |
60993 |
61043 |
+ |
DNA9-19_Mad |
DNA/MULE-MuDR |
| scaffold3510 |
61715 |
62302 |
- |
RS23 |
Unspecified |
| scaffold3510 |
62618 |
62691 |
+ |
(TAA)n |
Simple_repeat |
| scaffold3510 |
63001 |
63238 |
+ |
RS637 |
Unspecified |
| scaffold3510 |
63263 |
63298 |
+ |
(TTGAC)n |
Simple_repeat |
| scaffold3510 |
65356 |
65451 |
+ |
L1-2_EPa |
LINE/L1 |
| scaffold3510 |
65511 |
65557 |
+ |
LINE1-24_ZM |
LINE/L1 |
| scaffold3510 |
65638 |
67021 |
+ |
L1-5_STu |
LINE/L1 |
| scaffold3510 |
67546 |
68188 |
+ |
PL339 |
Unspecified |
| scaffold3510 |
68821 |
69034 |
+ |
MEGY-I_MT |
LTR/Gypsy |
| scaffold3510 |
69241 |
69871 |
- |
RS1207 |
Unspecified |
| scaffold3510 |
69347 |
69967 |
- |
RS661 |
Unspecified |
| scaffold3510 |
69525 |
70033 |
- |
RS1930 |
Unspecified |
| scaffold3510 |
70134 |
70775 |
+ |
MEGY-I_MT |
LTR/Gypsy |
| scaffold3510 |
70973 |
71020 |
+ |
(TGA)n |
Simple_repeat |
| scaffold3510 |
71212 |
71254 |
+ |
Gypsy-27_VV-I |
LTR/Gypsy |
| scaffold3510 |
71255 |
71309 |
+ |
(TTTTCG)n |
Simple_repeat |
| scaffold3510 |
72028 |
72089 |
+ |
A-rich |
Low_complexity |
| scaffold3510 |
72109 |
72130 |
+ |
(GTT)n |
Simple_repeat |
| scaffold3510 |
72692 |
72761 |
+ |
OPHELIA3_HV |
LTR/Gypsy |
| scaffold3510 |
74448 |
74467 |
+ |
(CAC)n |
Simple_repeat |
| scaffold3510 |
74478 |
74512 |
+ |
(GTGGTA)n |
Simple_repeat |
| scaffold3510 |
76043 |
76608 |
+ |
ATGP5A_I-int |
LTR/Gypsy |
| scaffold3510 |
77257 |
77293 |
+ |
Gypsy-9_EPa-I |
LTR/Gypsy |
| scaffold3510 |
78277 |
78361 |
- |
RS629 |
Unspecified |
| scaffold3510 |
78630 |
78682 |
+ |
(AATTTTT)n |
Simple_repeat |
| scaffold3510 |
78909 |
78949 |
+ |
(T)n |
Simple_repeat |
| scaffold3510 |
79911 |
79920 |
+ |
(GCTTTTTT)n |
Simple_repeat |
| scaffold3510 |
79921 |
79976 |
+ |
(T)n |
Simple_repeat |
| scaffold3510 |
80394 |
81098 |
+ |
RS4906 |
Unspecified |
| scaffold3510 |
80967 |
81364 |
+ |
RS1007 |
Unspecified |
| scaffold3510 |
81042 |
81473 |
+ |
RS1007 |
Unspecified |
| scaffold3510 |
81123 |
81551 |
+ |
RS1007 |
Unspecified |
| scaffold3510 |
81204 |
81634 |
+ |
RS1007 |
Unspecified |
| scaffold3510 |
81285 |
82176 |
+ |
RS1007 |
Unspecified |
| scaffold3510 |
81461 |
82335 |
- |
RS105 |
Unspecified |
| scaffold3510 |
82373 |
82443 |
+ |
RS869 |
Unspecified |
| scaffold3510 |
87210 |
88453 |
+ |
RS2918 |
Unspecified |
| scaffold3510 |
88405 |
89428 |
- |
RS3063 |
Unspecified |
| scaffold3510 |
91968 |
92385 |
- |
GYPSY3-I_MT |
LTR/Gypsy |
| scaffold3510 |
92855 |
93069 |
- |
Gypsy-I_MT |
LTR/Gypsy |
| scaffold3510 |
93059 |
93719 |
- |
Gypsy-I_MT |
LTR/Gypsy |
| scaffold3510 |
97397 |
97457 |
+ |
(TCAATTT)n |
Simple_repeat |
| scaffold3510 |
98084 |
98120 |
+ |
(TAT)n |
Simple_repeat |
| scaffold3510 |
98614 |
99455 |
+ |
RS514 |
Unspecified |
| scaffold3510 |
98709 |
99419 |
+ |
RS3091 |
Unspecified |
| scaffold3510 |
99013 |
99928 |
+ |
PL445 |
Unspecified |