scaffold360 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold360 |
1 |
93 |
+ |
(TTA)n |
Simple_repeat |
| scaffold360 |
191 |
220 |
+ |
(T)n |
Simple_repeat |
| scaffold360 |
1249 |
1303 |
+ |
(TAT)n |
Simple_repeat |
| scaffold360 |
1340 |
1386 |
- |
Vandal3 |
DNA/MULE-MuDR |
| scaffold360 |
1447 |
1497 |
+ |
(TTTAA)n |
Simple_repeat |
| scaffold360 |
1507 |
1533 |
+ |
(T)n |
Simple_repeat |
| scaffold360 |
2842 |
4109 |
- |
L1-1_GM |
LINE/L1 |
| scaffold360 |
4307 |
4388 |
- |
L1-3_EPa |
LINE/L1 |
| scaffold360 |
6887 |
6952 |
+ |
(T)n |
Simple_repeat |
| scaffold360 |
7305 |
7596 |
- |
RS463 |
Unspecified |
| scaffold360 |
8086 |
8356 |
- |
RS356 |
Unspecified |
| scaffold360 |
8560 |
8579 |
+ |
(T)n |
Simple_repeat |
| scaffold360 |
8645 |
8681 |
+ |
(T)n |
Simple_repeat |
| scaffold360 |
8819 |
8892 |
+ |
(TTA)n |
Simple_repeat |
| scaffold360 |
10009 |
10031 |
+ |
(T)n |
Simple_repeat |
| scaffold360 |
10996 |
11149 |
+ |
RS454 |
Unspecified |
| scaffold360 |
11122 |
11156 |
- |
RS13418 |
Unspecified |
| scaffold360 |
11170 |
11295 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold360 |
11548 |
11736 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold360 |
11748 |
11889 |
- |
RS13418 |
Unspecified |
| scaffold360 |
11763 |
12245 |
+ |
RS454 |
Unspecified |
| scaffold360 |
12457 |
12571 |
+ |
(TGT)n |
Simple_repeat |
| scaffold360 |
12966 |
13288 |
+ |
RS4655 |
Unspecified |
| scaffold360 |
13096 |
13387 |
- |
RS4146 |
Unspecified |
| scaffold360 |
13329 |
13542 |
+ |
RS3931 |
Unspecified |
| scaffold360 |
13857 |
14034 |
- |
RS806 |
Unspecified |
| scaffold360 |
14081 |
14118 |
+ |
(CTG)n |
Simple_repeat |
| scaffold360 |
14150 |
14250 |
+ |
RS412 |
Unspecified |
| scaffold360 |
15469 |
15511 |
+ |
(TTTCGGTT)n |
Simple_repeat |
| scaffold360 |
15949 |
15973 |
+ |
(TAC)n |
Simple_repeat |
| scaffold360 |
15973 |
16068 |
- |
RS806 |
Unspecified |
| scaffold360 |
16165 |
16220 |
- |
Gypsy-196_ZM-I |
LTR/Gypsy |
| scaffold360 |
16808 |
17350 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold360 |
16950 |
17031 |
- |
Copia-3_Pru-I |
LTR/Copia |
| scaffold360 |
17224 |
17299 |
- |
Copia-3_Pru-I |
LTR/Copia |
| scaffold360 |
17406 |
18065 |
- |
Copia-48_ST-I |
LTR/Copia |
| scaffold360 |
18209 |
18298 |
+ |
(ATGA)n |
Simple_repeat |
| scaffold360 |
18382 |
18440 |
+ |
GA-rich |
Low_complexity |
| scaffold360 |
19244 |
19534 |
+ |
LTR2-ZM_LTR |
LTR |
| scaffold360 |
19692 |
19746 |
+ |
(TATAAT)n |
Simple_repeat |
| scaffold360 |
20157 |
20229 |
+ |
(GGCGGCC)n |
Simple_repeat |
| scaffold360 |
20232 |
20250 |
+ |
(CCA)n |
Simple_repeat |
| scaffold360 |
20307 |
20406 |
+ |
(CCG)n |
Simple_repeat |
| scaffold360 |
21076 |
21899 |
- |
RS758 |
Unspecified |
| scaffold360 |
21874 |
22103 |
+ |
RS1121 |
Unspecified |
| scaffold360 |
22221 |
22426 |
+ |
PL727 |
Unspecified |
| scaffold360 |
23747 |
23794 |
+ |
(TTGAATG)n |
Simple_repeat |
| scaffold360 |
25305 |
25321 |
+ |
(ATC)n |
Simple_repeat |
| scaffold360 |
26055 |
26219 |
+ |
RS8 |
Unspecified |
| scaffold360 |
26226 |
26267 |
+ |
RS15697 |
Unspecified |
| scaffold360 |
26870 |
26900 |
+ |
(TCTT)n |
Simple_repeat |
| scaffold360 |
27640 |
27860 |
- |
PL501 |
Unspecified |
| scaffold360 |
27855 |
27913 |
+ |
PL271 |
Unspecified |
| scaffold360 |
28644 |
28772 |
- |
RS1400 |
Unspecified |
| scaffold360 |
28688 |
28790 |
- |
RS2854 |
Unspecified |
| scaffold360 |
28878 |
28926 |
+ |
(TCA)n |
Simple_repeat |
| scaffold360 |
29372 |
29474 |
+ |
RS2854 |
Unspecified |
| scaffold360 |
29390 |
29559 |
+ |
RS1400 |
Unspecified |
| scaffold360 |
29932 |
30072 |
- |
RS5401 |
Unspecified |
| scaffold360 |
30204 |
30240 |
+ |
(A)n |
Simple_repeat |
| scaffold360 |
30454 |
30564 |
+ |
RS18067 |
Unspecified |
| scaffold360 |
31556 |
31586 |
+ |
(TCTT)n |
Simple_repeat |
| scaffold360 |
32003 |
32040 |
+ |
(TTACAT)n |
Simple_repeat |
| scaffold360 |
32462 |
32594 |
+ |
RS4630 |
Unspecified |
| scaffold360 |
32487 |
32679 |
- |
RS2392 |
Unspecified |
| scaffold360 |
32675 |
32761 |
- |
RS5401 |
Unspecified |
| scaffold360 |
32893 |
32929 |
+ |
(A)n |
Simple_repeat |
| scaffold360 |
33143 |
33253 |
+ |
RS18067 |
Unspecified |
| scaffold360 |
33286 |
33325 |
+ |
(TATTTAA)n |
Simple_repeat |
| scaffold360 |
35429 |
35539 |
+ |
RS18067 |
Unspecified |
| scaffold360 |
35503 |
35739 |
- |
RS512 |
Unspecified |
| scaffold360 |
36294 |
36333 |
+ |
(ATC)n |
Simple_repeat |
| scaffold360 |
37591 |
37652 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold360 |
37703 |
37745 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold360 |
37822 |
37876 |
+ |
(TTATT)n |
Simple_repeat |
| scaffold360 |
39022 |
39151 |
+ |
(ATT)n |
Simple_repeat |
| scaffold360 |
39152 |
39169 |
+ |
(GTT)n |
Simple_repeat |
| scaffold360 |
39879 |
39939 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold360 |
40109 |
40163 |
+ |
(TTATT)n |
Simple_repeat |
| scaffold360 |
41352 |
41381 |
+ |
(T)n |
Simple_repeat |
| scaffold360 |
41814 |
41829 |
+ |
(ATATT)n |
Simple_repeat |
| scaffold360 |
41830 |
41880 |
+ |
(ATT)n |
Simple_repeat |
| scaffold360 |
41881 |
41887 |
+ |
(ATATT)n |
Simple_repeat |
| scaffold360 |
41930 |
41958 |
+ |
(AATTC)n |
Simple_repeat |
| scaffold360 |
42628 |
42876 |
- |
PL9 |
Unspecified |
| scaffold360 |
43127 |
43180 |
+ |
(ATT)n |
Simple_repeat |
| scaffold360 |
43375 |
43422 |
+ |
A-rich |
Low_complexity |
| scaffold360 |
43656 |
44065 |
- |
RS2174 |
Unspecified |
| scaffold360 |
44486 |
44504 |
+ |
(A)n |
Simple_repeat |
| scaffold360 |
44609 |
44634 |
+ |
(T)n |
Simple_repeat |
| scaffold360 |
45623 |
45802 |
+ |
RS15612 |
Unspecified |
| scaffold360 |
45852 |
45880 |
+ |
A-rich |
Low_complexity |
| scaffold360 |
46627 |
46687 |
+ |
A-rich |
Low_complexity |
| scaffold360 |
47614 |
47825 |
+ |
RS2822 |
Unspecified |
| scaffold360 |
48012 |
48258 |
- |
RS2061 |
Unspecified |
| scaffold360 |
48061 |
48296 |
+ |
RS8496 |
Unspecified |
| scaffold360 |
48656 |
48911 |
+ |
Copia15-VV_I-int |
LTR/Copia |
| scaffold360 |
49154 |
49211 |
+ |
TONT2-I_PV |
LTR/Copia |
| scaffold360 |
49237 |
49667 |
+ |
TONT2-I_PV |
LTR/Copia |
| scaffold360 |
49668 |
49698 |
+ |
(TTCTGT)n |
Simple_repeat |
| scaffold360 |
49699 |
50293 |
+ |
TONT2-I_PV |
LTR/Copia |
| scaffold360 |
50283 |
50447 |
+ |
RS2822 |
Unspecified |
| scaffold360 |
50652 |
50820 |
- |
RS2061 |
Unspecified |
| scaffold360 |
50806 |
50968 |
+ |
PL460 |
Unspecified |
| scaffold360 |
50966 |
51156 |
+ |
RS1144 |
Unspecified |
| scaffold360 |
50988 |
51223 |
+ |
RS8496 |
Unspecified |
| scaffold360 |
52637 |
52939 |
- |
L1-1_STu |
LINE/L1 |
| scaffold360 |
53181 |
53217 |
+ |
GA-rich |
Low_complexity |
| scaffold360 |
53672 |
53707 |
+ |
(AAT)n |
Simple_repeat |
| scaffold360 |
53816 |
53877 |
+ |
(AATTC)n |
Simple_repeat |
| scaffold360 |
54577 |
54711 |
+ |
RS6809 |
Unspecified |
| scaffold360 |
55245 |
55711 |
- |
PL2 |
Unspecified |
| scaffold360 |
56531 |
56565 |
+ |
(TCTTT)n |
Simple_repeat |
| scaffold360 |
56566 |
56579 |
+ |
(TCTATT)n |
Simple_repeat |
| scaffold360 |
56768 |
56792 |
+ |
(TGGACA)n |
Simple_repeat |
| scaffold360 |
56768 |
56905 |
+ |
(TGGACA)n |
Simple_repeat |
| scaffold360 |
56781 |
56905 |
- |
RS12088 |
Unspecified |
| scaffold360 |
56915 |
57095 |
+ |
Gypsy18-I_CR |
LTR/Gypsy |
| scaffold360 |
57697 |
57830 |
+ |
hAT-N16_ZM |
DNA/hAT-Ac |
| scaffold360 |
57845 |
57904 |
+ |
A-rich |
Low_complexity |
| scaffold360 |
58001 |
58196 |
+ |
ZhATN1_ZM |
DNA/hAT-Ac |
| scaffold360 |
58053 |
58219 |
- |
DS-RICE3N |
DNA/hAT-Ac |
| scaffold360 |
58229 |
58273 |
+ |
(TTAGGAT)n |
Simple_repeat |
| scaffold360 |
58760 |
58805 |
+ |
(T)n |
Simple_repeat |
| scaffold360 |
58856 |
58910 |
+ |
HAT-N16_Mad |
DNA/hAT-Tip100 |
| scaffold360 |
59665 |
59740 |
+ |
RS16831 |
Unspecified |
| scaffold360 |
59887 |
59959 |
- |
STOWAWAY12_SB |
DNA/TcMar-Stowaway |
| scaffold360 |
60366 |
60404 |
+ |
(TAGGTG)n |
Simple_repeat |
| scaffold360 |
60739 |
60798 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold360 |
60877 |
60944 |
+ |
(CT)n |
Simple_repeat |
| scaffold360 |
61009 |
61130 |
+ |
A-rich |
Low_complexity |
| scaffold360 |
61131 |
61176 |
+ |
(CA)n |
Simple_repeat |
| scaffold360 |
62248 |
62801 |
+ |
RS13496 |
Unspecified |
| scaffold360 |
63292 |
63325 |
+ |
(TTCTTT)n |
Simple_repeat |
| scaffold360 |
63496 |
63531 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold360 |
63623 |
63670 |
+ |
(TATT)n |
Simple_repeat |
| scaffold360 |
63945 |
64003 |
+ |
A-rich |
Low_complexity |
| scaffold360 |
66806 |
66977 |
+ |
RS79 |
Unspecified |
| scaffold360 |
67165 |
67195 |
+ |
(A)n |
Simple_repeat |
| scaffold360 |
67585 |
67875 |
- |
RS342 |
Unspecified |
| scaffold360 |
68539 |
68563 |
+ |
(TACTTT)n |
Simple_repeat |
| scaffold360 |
69129 |
69171 |
+ |
A-rich |
Low_complexity |
| scaffold360 |
69178 |
69830 |
- |
PL398 |
Unspecified |
| scaffold360 |
70077 |
70340 |
+ |
RS10 |
Unspecified |
| scaffold360 |
70427 |
70480 |
- |
RS946 |
Unspecified |
| scaffold360 |
70472 |
70694 |
+ |
RS946 |
Unspecified |
| scaffold360 |
70575 |
70729 |
- |
RS2051 |
Unspecified |
| scaffold360 |
70604 |
70992 |
- |
RS2051 |
Unspecified |
| scaffold360 |
70930 |
71198 |
+ |
RS354 |
Unspecified |
| scaffold360 |
71728 |
71760 |
+ |
(TTAAT)n |
Simple_repeat |
| scaffold360 |
74680 |
74715 |
+ |
A-rich |
Low_complexity |
| scaffold360 |
74975 |
75004 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold360 |
75722 |
75820 |
- |
PL754 |
Unspecified |
| scaffold360 |
76068 |
76147 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold360 |
76187 |
76286 |
+ |
(TTCAG)n |
Simple_repeat |
| scaffold360 |
76943 |
77014 |
- |
RS10 |
Unspecified |
| scaffold360 |
77288 |
77463 |
- |
PL838 |
Unspecified |
| scaffold360 |
78583 |
78794 |
- |
PL838 |
Unspecified |
| scaffold360 |
79574 |
79708 |
+ |
RS6180 |
Unspecified |
| scaffold360 |
80256 |
80311 |
+ |
(TATT)n |
Simple_repeat |
| scaffold360 |
80494 |
80735 |
- |
PL476 |
Unspecified |
| scaffold360 |
81851 |
81964 |
- |
L1-14_GM |
LINE/L1 |
| scaffold360 |
82103 |
82745 |
- |
L1-5_STu |
LINE/L1 |
| scaffold360 |
82958 |
83028 |
- |
L1-11_STu |
LINE/L1 |
| scaffold360 |
83631 |
83715 |
- |
L1-10_STu |
LINE/L1 |
| scaffold360 |
84117 |
84164 |
+ |
(TAT)n |
Simple_repeat |
| scaffold360 |
84599 |
84660 |
+ |
A-rich |
Low_complexity |
| scaffold360 |
84847 |
84895 |
+ |
(TTTATC)n |
Simple_repeat |
| scaffold360 |
84896 |
84917 |
+ |
(T)n |
Simple_repeat |
| scaffold360 |
84918 |
84948 |
+ |
(TTTATC)n |
Simple_repeat |
| scaffold360 |
85052 |
85095 |
+ |
(TTATAAC)n |
Simple_repeat |
| scaffold360 |
85355 |
85406 |
+ |
(ATAATC)n |
Simple_repeat |
| scaffold360 |
85732 |
85757 |
+ |
(TAGAT)n |
Simple_repeat |
| scaffold360 |
85760 |
86061 |
+ |
RS726 |
Unspecified |
| scaffold360 |
86576 |
86703 |
- |
RS11100 |
Unspecified |
| scaffold360 |
87400 |
87474 |
+ |
Copia-104_GM-LTR |
LTR/Copia |
| scaffold360 |
87785 |
87864 |
+ |
(TT)n |
Simple_repeat |
| scaffold360 |
87865 |
87882 |
+ |
(A)n |
Simple_repeat |
| scaffold360 |
88436 |
88598 |
+ |
RS14321 |
Unspecified |
| scaffold360 |
88769 |
89040 |
+ |
RS12879 |
Unspecified |
| scaffold360 |
88976 |
89126 |
+ |
RS16603 |
Unspecified |
| scaffold360 |
90649 |
90672 |
+ |
(A)n |
Simple_repeat |
| scaffold360 |
90948 |
91030 |
+ |
DIASPORA_I-int |
LTR/Gypsy |
| scaffold360 |
91078 |
91116 |
+ |
(A)n |
Simple_repeat |
| scaffold360 |
91554 |
91595 |
+ |
Copia-10_TC-I |
LTR/Copia |
| scaffold360 |
92898 |
92955 |
- |
BvL1-2 |
LINE/L1 |
| scaffold360 |
92956 |
92983 |
+ |
Copia-65_ZM-I |
LTR/Copia |
| scaffold360 |
93804 |
93828 |
+ |
(ATTC)n |
Simple_repeat |
| scaffold360 |
94176 |
94451 |
+ |
Copia-59_ST-I |
LTR/Copia |
| scaffold360 |
94428 |
94846 |
+ |
RS5939 |
Unspecified |
| scaffold360 |
95692 |
95745 |
- |
Gypsy1-PTR_I-int |
LTR/Gypsy |
| scaffold360 |
96207 |
96325 |
+ |
RS8316 |
Unspecified |
| scaffold360 |
96997 |
97064 |
+ |
(ATTTTG)n |
Simple_repeat |
| scaffold360 |
99555 |
99832 |
- |
RS9793 |
Unspecified |
| scaffold360 |
99833 |
99859 |
+ |
Gypsy-10_Mad-I |
LTR/Gypsy |
| scaffold360 |
99945 |
100114 |
+ |
Gypsy-10_Mad-I |
LTR/Gypsy |
| scaffold360 |
243561 |
243578 |
+ |
(A)n |
Simple_repeat |