scaffold3619 Repeat List
genome |
start |
end |
strand |
repeat-name |
repeat-class |
scaffold3619 |
5 |
46 |
+ |
A-rich |
Low_complexity |
scaffold3619 |
207 |
258 |
+ |
A-rich |
Low_complexity |
scaffold3619 |
278 |
634 |
- |
RS1529 |
Unspecified |
scaffold3619 |
805 |
967 |
- |
RS4 |
Unspecified |
scaffold3619 |
4481 |
4506 |
+ |
(TAAA)n |
Simple_repeat |
scaffold3619 |
4637 |
4681 |
+ |
(CAT)n |
Simple_repeat |
scaffold3619 |
5072 |
5172 |
+ |
GA-rich |
Low_complexity |
scaffold3619 |
5263 |
5288 |
+ |
(T)n |
Simple_repeat |
scaffold3619 |
5479 |
5528 |
+ |
(TTAT)n |
Simple_repeat |
scaffold3619 |
6246 |
6304 |
+ |
RS11918 |
Unspecified |
scaffold3619 |
6961 |
7004 |
+ |
(AATGAA)n |
Simple_repeat |
scaffold3619 |
7675 |
7708 |
+ |
(ATTAAAA)n |
Simple_repeat |
scaffold3619 |
7813 |
7847 |
+ |
(CAT)n |
Simple_repeat |
scaffold3619 |
7907 |
7960 |
+ |
(TCT)n |
Simple_repeat |
scaffold3619 |
8267 |
8300 |
+ |
A-rich |
Low_complexity |
scaffold3619 |
8518 |
8539 |
+ |
(TAT)n |
Simple_repeat |
scaffold3619 |
9505 |
9673 |
+ |
RS573 |
Unspecified |
scaffold3619 |
9666 |
9748 |
+ |
SINE2-1_PD |
SINE/tRNA-RTE |
scaffold3619 |
12404 |
12452 |
+ |
(CTC)n |
Simple_repeat |
scaffold3619 |
13891 |
13929 |
+ |
A-rich |
Low_complexity |
scaffold3619 |
14140 |
14204 |
+ |
RS13832 |
Unspecified |
scaffold3619 |
14295 |
14382 |
+ |
GA-rich |
Low_complexity |
scaffold3619 |
17009 |
17039 |
+ |
(TCAGA)n |
Simple_repeat |
scaffold3619 |
20385 |
20459 |
+ |
(ACATTT)n |
Simple_repeat |
scaffold3619 |
20858 |
20924 |
- |
RS4475 |
Unspecified |
scaffold3619 |
22736 |
23042 |
- |
RS3984 |
Unspecified |
scaffold3619 |
23046 |
23224 |
- |
RS1362 |
Unspecified |
scaffold3619 |
24051 |
24077 |
+ |
(GCAT)n |
Simple_repeat |
scaffold3619 |
24732 |
24757 |
+ |
(ACAAA)n |
Simple_repeat |
scaffold3619 |
24975 |
25160 |
- |
PL469 |
Unspecified |
scaffold3619 |
31297 |
31689 |
- |
RS743 |
Unspecified |
scaffold3619 |
32732 |
32750 |
+ |
(A)n |
Simple_repeat |
scaffold3619 |
35232 |
35283 |
+ |
(CGAAGA)n |
Simple_repeat |
scaffold3619 |
35583 |
35646 |
+ |
GA-rich |
Low_complexity |
scaffold3619 |
35701 |
35821 |
- |
RS16379 |
Unspecified |
scaffold3619 |
37052 |
37072 |
+ |
(A)n |
Simple_repeat |
scaffold3619 |
37100 |
37220 |
- |
RS16379 |
Unspecified |
scaffold3619 |
38028 |
38062 |
+ |
(T)n |
Simple_repeat |
scaffold3619 |
38220 |
38335 |
+ |
RS12449 |
Unspecified |
scaffold3619 |
38234 |
38340 |
- |
RS4475 |
Unspecified |
scaffold3619 |
38435 |
38484 |
+ |
(TAATA)n |
Simple_repeat |
scaffold3619 |
38607 |
38635 |
+ |
(A)n |
Simple_repeat |
scaffold3619 |
39767 |
39866 |
+ |
(CCA)n |
Simple_repeat |
scaffold3619 |
39988 |
40022 |
+ |
(AGTGAC)n |
Simple_repeat |
scaffold3619 |
40151 |
40181 |
+ |
(ACGACA)n |
Simple_repeat |
scaffold3619 |
41789 |
41935 |
+ |
Copia-81_BRa-I |
LTR/Copia |
scaffold3619 |
43681 |
43741 |
+ |
RLG_scMaximus_1_3-LTR |
LTR/Copia |
scaffold3619 |
46200 |
46222 |
+ |
(A)n |
Simple_repeat |
scaffold3619 |
46488 |
46542 |
+ |
GA-rich |
Low_complexity |
scaffold3619 |
46823 |
46875 |
+ |
GA-rich |
Low_complexity |
scaffold3619 |
47149 |
47223 |
+ |
A-rich |
Low_complexity |
scaffold3619 |
47833 |
47892 |
+ |
(ACTTTAA)n |
Simple_repeat |
scaffold3619 |
47991 |
48021 |
+ |
(T)n |
Simple_repeat |
scaffold3619 |
53065 |
53096 |
+ |
A-rich |
Low_complexity |
scaffold3619 |
53131 |
53160 |
+ |
(AGA)n |
Simple_repeat |
scaffold3619 |
53987 |
54071 |
+ |
PL105 |
Unspecified |
scaffold3619 |
54223 |
54242 |
+ |
(T)n |
Simple_repeat |
scaffold3619 |
55041 |
55152 |
- |
RS285 |
Unspecified |
scaffold3619 |
55420 |
55463 |
+ |
(AGAT)n |
Simple_repeat |
scaffold3619 |
55854 |
55944 |
- |
LTR-7_Mad-LTR |
LTR |
scaffold3619 |
56290 |
56317 |
+ |
(T)n |
Simple_repeat |
scaffold3619 |
56316 |
56347 |
+ |
(TTAATA)n |
Simple_repeat |
scaffold3619 |
56513 |
56552 |
+ |
(CACCCG)n |
Simple_repeat |
scaffold3619 |
56513 |
56678 |
+ |
(CACCCG)n |
Simple_repeat |
scaffold3619 |
56547 |
56678 |
- |
RS15901 |
Unspecified |
scaffold3619 |
56681 |
56715 |
+ |
(TTATA)n |
Simple_repeat |
scaffold3619 |
56748 |
56776 |
+ |
(ATGT)n |
Simple_repeat |
scaffold3619 |
56898 |
57001 |
- |
RS15506 |
Unspecified |
scaffold3619 |
57400 |
57606 |
- |
RS10 |
Unspecified |
scaffold3619 |
58016 |
58136 |
- |
RS1848 |
Unspecified |
scaffold3619 |
59027 |
59070 |
- |
HAT-N11_Mad |
DNA/hAT-Ac |
scaffold3619 |
59625 |
59774 |
- |
RS11266 |
Unspecified |
scaffold3619 |
59885 |
59954 |
+ |
RS15470 |
Unspecified |
scaffold3619 |
60122 |
60242 |
- |
RS16764 |
Unspecified |
scaffold3619 |
60468 |
60713 |
+ |
RS4 |
Unspecified |
scaffold3619 |
61584 |
61608 |
+ |
(A)n |
Simple_repeat |
scaffold3619 |
61659 |
61801 |
+ |
RS16679 |
Unspecified |
scaffold3619 |
62226 |
62477 |
+ |
RS17555 |
Unspecified |
scaffold3619 |
62540 |
62840 |
+ |
RS146 |
Unspecified |
scaffold3619 |
63396 |
63419 |
+ |
(ATG)n |
Simple_repeat |
scaffold3619 |
65090 |
65136 |
+ |
(CAACAG)n |
Simple_repeat |
scaffold3619 |
65315 |
65366 |
+ |
(TATGAT)n |
Simple_repeat |
scaffold3619 |
65530 |
65561 |
+ |
(TTCGAG)n |
Simple_repeat |
scaffold3619 |
65655 |
65693 |
+ |
(TGATT)n |
Simple_repeat |
scaffold3619 |
65819 |
65906 |
+ |
(CCA)n |
Simple_repeat |
scaffold3619 |
65935 |
65960 |
+ |
(A)n |
Simple_repeat |
scaffold3619 |
65979 |
66055 |
+ |
(CCA)n |
Simple_repeat |
scaffold3619 |
66278 |
66527 |
+ |
(GTG)n |
Simple_repeat |
scaffold3619 |
66531 |
66624 |
+ |
(GAGTGA)n |
Simple_repeat |
scaffold3619 |
66531 |
66733 |
+ |
(GAGTGA)n |
Simple_repeat |
scaffold3619 |
66610 |
66733 |
+ |
RS8620 |
Unspecified |
scaffold3619 |
67405 |
67437 |
+ |
(GGGCGA)n |
Simple_repeat |
scaffold3619 |
68891 |
68909 |
+ |
(A)n |
Simple_repeat |
scaffold3619 |
69001 |
69152 |
- |
RS17679 |
Unspecified |
scaffold3619 |
69318 |
69349 |
+ |
(AAAATAA)n |
Simple_repeat |
scaffold3619 |
69584 |
70178 |
- |
RS14066 |
Unspecified |
scaffold3619 |
70814 |
70921 |
- |
RS13567 |
Unspecified |
scaffold3619 |
71484 |
71635 |
- |
RS16180 |
Unspecified |
scaffold3619 |
71662 |
71767 |
- |
RS17454 |
Unspecified |
scaffold3619 |
73218 |
73343 |
- |
RS18415 |
Unspecified |
scaffold3619 |
76266 |
76416 |
- |
RS16616 |
Unspecified |
scaffold3619 |
76449 |
76607 |
- |
RS17001 |
Unspecified |
scaffold3619 |
79485 |
79507 |
+ |
(AGAA)n |
Simple_repeat |
scaffold3619 |
81828 |
81868 |
+ |
(AATTTAG)n |
Simple_repeat |
scaffold3619 |
82529 |
82589 |
+ |
A-rich |
Low_complexity |
scaffold3619 |
82637 |
82680 |
+ |
(AAC)n |
Simple_repeat |
scaffold3619 |
82681 |
82719 |
+ |
(ACCCT)n |
Simple_repeat |
scaffold3619 |
82888 |
82985 |
- |
EnSpm-1_HV |
DNA/CMC-EnSpm |
scaffold3619 |
83119 |
83574 |
+ |
PL654 |
Unspecified |
scaffold3619 |
84292 |
84606 |
- |
PL617 |
Unspecified |
scaffold3619 |
84736 |
84792 |
+ |
A-rich |
Low_complexity |
scaffold3619 |
85104 |
85148 |
- |
HAT-N10_Mad |
DNA/hAT-Ac |
scaffold3619 |
85168 |
85276 |
+ |
RS1042 |
Unspecified |
scaffold3619 |
85381 |
85416 |
+ |
(TCGTG)n |
Simple_repeat |
scaffold3619 |
85587 |
85656 |
- |
HAT-N10_Mad |
DNA/hAT-Ac |
scaffold3619 |
86083 |
86233 |
- |
RS7699 |
Unspecified |
scaffold3619 |
86698 |
86747 |
+ |
(AAT)n |
Simple_repeat |
scaffold3619 |
86838 |
86909 |
+ |
A-rich |
Low_complexity |
scaffold3619 |
86995 |
87028 |
+ |
(CGGC)n |
Simple_repeat |
scaffold3619 |
87940 |
87956 |
+ |
(A)n |
Simple_repeat |
scaffold3619 |
88300 |
88320 |
+ |
(A)n |
Simple_repeat |
scaffold3619 |
88674 |
88692 |
+ |
(T)n |
Simple_repeat |
scaffold3619 |
89125 |
89156 |
+ |
A-rich |
Low_complexity |
scaffold3619 |
90156 |
90202 |
+ |
(T)n |
Simple_repeat |
scaffold3619 |
90643 |
90709 |
- |
STOWAWAY14_SB |
DNA/TcMar-Stowaway |
scaffold3619 |
90976 |
91032 |
+ |
PL100 |
Unspecified |
scaffold3619 |
90978 |
91020 |
+ |
PL565 |
Unspecified |
scaffold3619 |
93205 |
93227 |
+ |
(TAT)n |
Simple_repeat |
scaffold3619 |
93282 |
93314 |
+ |
(TGAGAA)n |
Simple_repeat |
scaffold3619 |
93446 |
93485 |
+ |
(TTGAT)n |
Simple_repeat |
scaffold3619 |
93499 |
93524 |
+ |
(GAAT)n |
Simple_repeat |
scaffold3619 |
93583 |
93606 |
+ |
(TATG)n |
Simple_repeat |
scaffold3619 |
94835 |
94859 |
+ |
(ATTTTT)n |
Simple_repeat |
scaffold3619 |
94957 |
94979 |
+ |
(T)n |
Simple_repeat |
scaffold3619 |
95486 |
95630 |
- |
Copia-3_PTri-I |
LTR/Copia |
scaffold3619 |
96085 |
96105 |
+ |
(A)n |
Simple_repeat |
scaffold3619 |
96106 |
96145 |
+ |
A-rich |
Low_complexity |
scaffold3619 |
96748 |
96772 |
+ |
(ATTTTT)n |
Simple_repeat |
scaffold3619 |
96870 |
96892 |
+ |
(T)n |
Simple_repeat |
scaffold3619 |
97399 |
97543 |
- |
Copia-3_PTri-I |
LTR/Copia |
scaffold3619 |
98472 |
98511 |
+ |
(TTTCAGC)n |
Simple_repeat |
scaffold3619 |
98812 |
99068 |
- |
RS1 |
Unspecified |
scaffold3619 |
99511 |
99538 |
+ |
(ATA)n |
Simple_repeat |
scaffold3619 |
101988 |
102028 |
+ |
(A)n |
Simple_repeat |
scaffold3619 |
102129 |
102153 |
+ |
(CATAAA)n |
Simple_repeat |
scaffold3619 |
107548 |
107752 |
- |
RS365 |
Unspecified |
scaffold3619 |
107790 |
107883 |
+ |
RS972 |
Unspecified |
scaffold3619 |
108029 |
108054 |
+ |
(CATA)n |
Simple_repeat |
scaffold3619 |
108132 |
108169 |
+ |
(AATC)n |
Simple_repeat |
scaffold3619 |
108656 |
108679 |
+ |
(T)n |
Simple_repeat |
scaffold3619 |
108732 |
108748 |
+ |
(T)n |
Simple_repeat |
scaffold3619 |
108759 |
108952 |
- |
RS106 |
Unspecified |
scaffold3619 |
108953 |
109122 |
+ |
PL26 |
Unspecified |
scaffold3619 |
109122 |
109196 |
- |
PL818 |
Unspecified |
scaffold3619 |
109199 |
109370 |
- |
RS95 |
Unspecified |
scaffold3619 |
111238 |
111421 |
+ |
RS326 |
Unspecified |
scaffold3619 |
111941 |
111963 |
+ |
(T)n |
Simple_repeat |
scaffold3619 |
114875 |
114918 |
+ |
(GTT)n |
Simple_repeat |
scaffold3619 |
114977 |
115159 |
+ |
cacta |
cacta(TransposonPSI) |
scaffold3619 |
115000 |
115102 |
+ |
(CGGAGG)n |
Simple_repeat |
scaffold3619 |
115110 |
115138 |
+ |
(TTAGGG)n |
Simple_repeat |
scaffold3619 |
115340 |
115362 |
+ |
(AG)n |
Simple_repeat |
scaffold3619 |
115357 |
115378 |
+ |
(GATT)n |
Simple_repeat |
scaffold3619 |
116952 |
116975 |
+ |
(A)n |
Simple_repeat |
scaffold3619 |
118421 |
118477 |
+ |
A-rich |
Low_complexity |
scaffold3619 |
118475 |
118522 |
+ |
(AATTG)n |
Simple_repeat |
scaffold3619 |
118690 |
118731 |
+ |
(CT)n |
Simple_repeat |
scaffold3619 |
119392 |
119449 |
+ |
A-rich |
Low_complexity |
scaffold3619 |
119462 |
119610 |
+ |
RS2902 |
Unspecified |
scaffold3619 |
119610 |
119641 |
+ |
(TTAT)n |
Simple_repeat |
scaffold3619 |
119992 |
120238 |
- |
RS3535 |
Unspecified |
scaffold3619 |
120563 |
120593 |
+ |
(A)n |
Simple_repeat |
scaffold3619 |
121345 |
121364 |
+ |
(TTGATG)n |
Simple_repeat |
scaffold3619 |
121365 |
121402 |
+ |
(TGA)n |
Simple_repeat |
scaffold3619 |
121546 |
121568 |
+ |
(TGAT)n |
Simple_repeat |
scaffold3619 |
123554 |
123583 |
+ |
(T)n |
Simple_repeat |
scaffold3619 |
125381 |
125410 |
+ |
(T)n |
Simple_repeat |
scaffold3619 |
126129 |
126258 |
+ |
RS10 |
Unspecified |
scaffold3619 |
128352 |
128380 |
+ |
(TGAAC)n |
Simple_repeat |
scaffold3619 |
128913 |
128959 |
+ |
(ATCATCA)n |
Simple_repeat |
scaffold3619 |
129288 |
129425 |
+ |
RS11598 |
Unspecified |
scaffold3619 |
130293 |
130377 |
+ |
(ATGAA)n |
Simple_repeat |
scaffold3619 |
131243 |
131297 |
- |
RS16201 |
Unspecified |
scaffold3619 |
131832 |
132080 |
+ |
RS4 |
Unspecified |
scaffold3619 |
132359 |
132511 |
+ |
RS26 |
Unspecified |
scaffold3619 |
132610 |
132715 |
+ |
(TAA)n |
Simple_repeat |
scaffold3619 |
132797 |
132830 |
+ |
(TTA)n |
Simple_repeat |
scaffold3619 |
132831 |
132877 |
+ |
(ATTA)n |
Simple_repeat |
scaffold3619 |
133068 |
133128 |
+ |
(TAA)n |
Simple_repeat |
scaffold3619 |
133150 |
133253 |
+ |
(TGATT)n |
Simple_repeat |
scaffold3619 |
133285 |
133972 |
+ |
PL504 |
Unspecified |
scaffold3619 |
134288 |
134418 |
- |
RS9351 |
Unspecified |
scaffold3619 |
134656 |
134738 |
+ |
(TTA)n |
Simple_repeat |
scaffold3619 |
134760 |
134783 |
+ |
(A)n |
Simple_repeat |
scaffold3619 |
134878 |
134939 |
+ |
(CACCAAC)n |
Simple_repeat |
scaffold3619 |
135039 |
135099 |
+ |
(AATTA)n |
Simple_repeat |
scaffold3619 |
135269 |
135317 |
- |
PL375 |
Unspecified |
scaffold3619 |
135674 |
135727 |
- |
HAT-14_Mad |
DNA/hAT-Tip100 |
scaffold3619 |
136055 |
136084 |
+ |
A-rich |
Low_complexity |
scaffold3619 |
137683 |
138026 |
+ |
RS326 |
Unspecified |
scaffold3619 |
140444 |
140630 |
+ |
PL582 |
Unspecified |
scaffold3619 |
140632 |
140674 |
+ |
(TAA)n |
Simple_repeat |
scaffold3619 |
141086 |
141113 |
+ |
(A)n |
Simple_repeat |
scaffold3619 |
145340 |
145398 |
+ |
(CATAA)n |
Simple_repeat |
scaffold3619 |
145373 |
145399 |
+ |
(TACA)n |
Simple_repeat |
scaffold3619 |
145733 |
145759 |
+ |
(TGA)n |
Simple_repeat |
scaffold3619 |
146203 |
146539 |
+ |
PL744 |
Unspecified |
scaffold3619 |
146693 |
146750 |
+ |
STOWAWAY2_SB |
DNA/TcMar-Stowaway |
scaffold3619 |
149092 |
149543 |
+ |
(CCA)n |
Simple_repeat |
scaffold3619 |
149092 |
149168 |
+ |
(CCA)n |
Simple_repeat |
scaffold3619 |
149144 |
149543 |
- |
PL744 |
Unspecified |
scaffold3619 |
149651 |
149694 |
+ |
A-rich |
Low_complexity |
scaffold3619 |
149816 |
149901 |
+ |
PL216 |
Unspecified |
scaffold3619 |
149959 |
150102 |
+ |
(CCCGA)n |
Simple_repeat |
scaffold3619 |
157877 |
157906 |
+ |
(A)n |
Simple_repeat |
scaffold3619 |
158897 |
158914 |
+ |
(A)n |
Simple_repeat |
scaffold3619 |
160072 |
160111 |
+ |
A-rich |
Low_complexity |