scaffold3687 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold3687 |
5 |
294 |
+ |
RS1936 |
Unspecified |
| scaffold3687 |
250 |
413 |
+ |
RS876 |
Unspecified |
| scaffold3687 |
824 |
886 |
+ |
GA-rich |
Low_complexity |
| scaffold3687 |
2820 |
2904 |
+ |
RS5061 |
Unspecified |
| scaffold3687 |
2929 |
3043 |
- |
RS5061 |
Unspecified |
| scaffold3687 |
3042 |
3071 |
+ |
(AT)n |
Simple_repeat |
| scaffold3687 |
4954 |
5177 |
- |
RS1864 |
Unspecified |
| scaffold3687 |
5665 |
5879 |
+ |
(TTG)n |
Simple_repeat |
| scaffold3687 |
7580 |
7624 |
+ |
A-rich |
Low_complexity |
| scaffold3687 |
9766 |
9811 |
+ |
(T)n |
Simple_repeat |
| scaffold3687 |
9953 |
9976 |
+ |
(A)n |
Simple_repeat |
| scaffold3687 |
10165 |
10197 |
+ |
(T)n |
Simple_repeat |
| scaffold3687 |
10994 |
11085 |
+ |
MuDR-8_VV |
DNA/MULE-MuDR |
| scaffold3687 |
11683 |
11738 |
+ |
(TATAACA)n |
Simple_repeat |
| scaffold3687 |
15470 |
16075 |
+ |
PL445 |
Unspecified |
| scaffold3687 |
16860 |
16950 |
+ |
(TTATT)n |
Simple_repeat |
| scaffold3687 |
17531 |
17559 |
+ |
(A)n |
Simple_repeat |
| scaffold3687 |
17843 |
17890 |
+ |
(AATTTC)n |
Simple_repeat |
| scaffold3687 |
17947 |
17999 |
- |
EnSpm-18_ZM |
DNA/CMC-EnSpm |
| scaffold3687 |
18136 |
18179 |
+ |
A-rich |
Low_complexity |
| scaffold3687 |
19092 |
19604 |
+ |
RS1281 |
Unspecified |
| scaffold3687 |
20038 |
20131 |
+ |
A-rich |
Low_complexity |
| scaffold3687 |
20254 |
20920 |
+ |
RS988 |
Unspecified |
| scaffold3687 |
21271 |
21299 |
+ |
(T)n |
Simple_repeat |
| scaffold3687 |
21613 |
22710 |
- |
RS7435 |
Unspecified |
| scaffold3687 |
23281 |
23581 |
- |
MuSHAN_MT |
DNA/MULE-MuDR |
| scaffold3687 |
24308 |
24342 |
+ |
(A)n |
Simple_repeat |
| scaffold3687 |
24606 |
24700 |
+ |
(TCATCG)n |
Simple_repeat |
| scaffold3687 |
25005 |
25061 |
+ |
(TTTATT)n |
Simple_repeat |
| scaffold3687 |
25432 |
25480 |
+ |
(T)n |
Simple_repeat |
| scaffold3687 |
26185 |
26827 |
- |
ATIS112A |
DNA/PIF-Harbinger |
| scaffold3687 |
26869 |
27037 |
- |
RS7786 |
Unspecified |
| scaffold3687 |
26962 |
27182 |
+ |
(T)n |
Simple_repeat |
| scaffold3687 |
27161 |
27182 |
+ |
(T)n |
Simple_repeat |
| scaffold3687 |
30194 |
30287 |
+ |
Gypsy-19_SB-I |
LTR/Gypsy |
| scaffold3687 |
30194 |
30651 |
+ |
Gypsy-19_SB-I |
LTR/Gypsy |
| scaffold3687 |
30247 |
30651 |
+ |
RS1120 |
Unspecified |
| scaffold3687 |
30828 |
30944 |
+ |
Copia-4_SL-LTR |
LTR/Copia |
| scaffold3687 |
32247 |
32360 |
+ |
(TATAAGCA)n |
Simple_repeat |
| scaffold3687 |
32813 |
33291 |
+ |
RS446 |
Unspecified |
| scaffold3687 |
34222 |
34503 |
+ |
PL911 |
Unspecified |
| scaffold3687 |
34781 |
35024 |
- |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold3687 |
36823 |
37150 |
- |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold3687 |
37275 |
37820 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold3687 |
38929 |
38974 |
+ |
(ATCTTGA)n |
Simple_repeat |
| scaffold3687 |
39160 |
39181 |
+ |
(CATT)n |
Simple_repeat |
| scaffold3687 |
39465 |
39483 |
+ |
(A)n |
Simple_repeat |
| scaffold3687 |
39940 |
40297 |
+ |
RS446 |
Unspecified |
| scaffold3687 |
40305 |
40950 |
- |
PL678 |
Unspecified |
| scaffold3687 |
41684 |
41752 |
+ |
(TATTTACAA)n |
Simple_repeat |
| scaffold3687 |
41971 |
42049 |
+ |
COP14_I_MT-int |
LTR/Copia |
| scaffold3687 |
41982 |
42128 |
+ |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold3687 |
42769 |
43004 |
+ |
RS14551 |
Unspecified |
| scaffold3687 |
43058 |
43147 |
+ |
A-rich |
Low_complexity |
| scaffold3687 |
43921 |
44029 |
+ |
RS15405 |
Unspecified |
| scaffold3687 |
44227 |
44354 |
+ |
RS17949 |
Unspecified |
| scaffold3687 |
44860 |
44877 |
+ |
(TA)n |
Simple_repeat |
| scaffold3687 |
45080 |
45185 |
+ |
A-rich |
Low_complexity |
| scaffold3687 |
45362 |
45918 |
+ |
RS1154 |
Unspecified |
| scaffold3687 |
45500 |
46084 |
- |
PL936 |
Unspecified |
| scaffold3687 |
45655 |
46137 |
+ |
PL243 |
Unspecified |
| scaffold3687 |
46175 |
46205 |
+ |
(ATTTT)n |
Simple_repeat |
| scaffold3687 |
46361 |
46403 |
+ |
(ATT)n |
Simple_repeat |
| scaffold3687 |
46534 |
46671 |
- |
RS69 |
Unspecified |
| scaffold3687 |
46696 |
46712 |
+ |
(TTATT)n |
Simple_repeat |
| scaffold3687 |
46713 |
46752 |
+ |
(TATTTT)n |
Simple_repeat |
| scaffold3687 |
46808 |
47566 |
- |
RS684 |
Unspecified |
| scaffold3687 |
47019 |
47034 |
+ |
(GATGAA)n |
Simple_repeat |
| scaffold3687 |
47035 |
47072 |
+ |
(GAT)n |
Simple_repeat |
| scaffold3687 |
47134 |
47192 |
+ |
(TTTGTA)n |
Simple_repeat |
| scaffold3687 |
47277 |
47615 |
- |
RS1396 |
Unspecified |
| scaffold3687 |
47646 |
47683 |
+ |
(GTATTT)n |
Simple_repeat |
| scaffold3687 |
47743 |
47772 |
+ |
(GTGTAA)n |
Simple_repeat |
| scaffold3687 |
47940 |
47996 |
+ |
A-rich |
Low_complexity |
| scaffold3687 |
48291 |
48388 |
- |
RS4063 |
Unspecified |
| scaffold3687 |
48363 |
48847 |
+ |
PL812 |
Unspecified |
| scaffold3687 |
48423 |
48846 |
+ |
PL800 |
Unspecified |
| scaffold3687 |
48847 |
49289 |
- |
RS168 |
Unspecified |
| scaffold3687 |
49470 |
49789 |
+ |
A-rich |
Low_complexity |
| scaffold3687 |
49945 |
49993 |
+ |
(T)n |
Simple_repeat |
| scaffold3687 |
50613 |
50663 |
+ |
(TAATATT)n |
Simple_repeat |
| scaffold3687 |
51512 |
51556 |
+ |
RS1779 |
Unspecified |
| scaffold3687 |
51587 |
51611 |
+ |
(A)n |
Simple_repeat |
| scaffold3687 |
52212 |
52267 |
+ |
(TTCTTT)n |
Simple_repeat |
| scaffold3687 |
52573 |
52633 |
+ |
(AACACAT)n |
Simple_repeat |
| scaffold3687 |
53072 |
53464 |
+ |
RS512 |
Unspecified |
| scaffold3687 |
54193 |
54256 |
+ |
(AAT)n |
Simple_repeat |
| scaffold3687 |
55721 |
55864 |
- |
RS1082 |
Unspecified |
| scaffold3687 |
56073 |
56329 |
+ |
RS106 |
Unspecified |
| scaffold3687 |
56326 |
56559 |
+ |
(TAA)n |
Simple_repeat |
| scaffold3687 |
56429 |
56559 |
+ |
(TAA)n |
Simple_repeat |
| scaffold3687 |
56565 |
57002 |
- |
PL464 |
Unspecified |
| scaffold3687 |
57231 |
57269 |
+ |
(TCT)n |
Simple_repeat |
| scaffold3687 |
57281 |
57377 |
+ |
(CAT)n |
Simple_repeat |
| scaffold3687 |
57917 |
58101 |
+ |
RS10307 |
Unspecified |
| scaffold3687 |
58111 |
58426 |
- |
RS806 |
Unspecified |
| scaffold3687 |
59050 |
59353 |
+ |
RS1906 |
Unspecified |
| scaffold3687 |
64431 |
64457 |
+ |
A-rich |
Low_complexity |
| scaffold3687 |
64759 |
64928 |
- |
RS15774 |
Unspecified |
| scaffold3687 |
64957 |
65324 |
- |
RS11484 |
Unspecified |
| scaffold3687 |
65325 |
65568 |
+ |
RS4 |
Unspecified |
| scaffold3687 |
65567 |
65786 |
- |
RS5416 |
Unspecified |
| scaffold3687 |
66180 |
66200 |
+ |
(A)n |
Simple_repeat |
| scaffold3687 |
66362 |
66387 |
+ |
(T)n |
Simple_repeat |
| scaffold3687 |
66814 |
66847 |
+ |
(T)n |
Simple_repeat |
| scaffold3687 |
66873 |
66913 |
+ |
(GGC)n |
Simple_repeat |
| scaffold3687 |
67131 |
67191 |
+ |
(TTA)n |
Simple_repeat |
| scaffold3687 |
67234 |
67327 |
+ |
(ATT)n |
Simple_repeat |
| scaffold3687 |
68717 |
68761 |
+ |
RS18371 |
Unspecified |
| scaffold3687 |
70066 |
70162 |
+ |
Gypsy-10_Mad-I |
LTR/Gypsy |
| scaffold3687 |
73656 |
73709 |
+ |
(GTAGAAT)n |
Simple_repeat |
| scaffold3687 |
74653 |
74689 |
+ |
A-rich |
Low_complexity |
| scaffold3687 |
78538 |
78544 |
+ |
(ATA)n |
Simple_repeat |
| scaffold3687 |
78545 |
78581 |
+ |
A-rich |
Low_complexity |
| scaffold3687 |
78582 |
78588 |
+ |
(ATA)n |
Simple_repeat |
| scaffold3687 |
81058 |
81090 |
+ |
A-rich |
Low_complexity |
| scaffold3687 |
82762 |
82780 |
+ |
(CAC)n |
Simple_repeat |
| scaffold3687 |
83256 |
83277 |
+ |
(A)n |
Simple_repeat |
| scaffold3687 |
85768 |
85805 |
+ |
(GTGTGAG)n |
Simple_repeat |
| scaffold3687 |
85876 |
87090 |
+ |
RS265 |
Unspecified |
| scaffold3687 |
87083 |
87229 |
+ |
RS265 |
Unspecified |
| scaffold3687 |
87904 |
89538 |
- |
RS265 |
Unspecified |
| scaffold3687 |
89528 |
89799 |
- |
PL634 |
Unspecified |
| scaffold3687 |
90393 |
90605 |
- |
RS5928 |
Unspecified |
| scaffold3687 |
91341 |
91386 |
+ |
(GTG)n |
Simple_repeat |
| scaffold3687 |
91534 |
91715 |
+ |
RS1313 |
Unspecified |
| scaffold3687 |
93328 |
93693 |
+ |
RS2390 |
Unspecified |
| scaffold3687 |
93667 |
93710 |
+ |
PL347 |
Unspecified |
| scaffold3687 |
93918 |
93944 |
+ |
(AAT)n |
Simple_repeat |
| scaffold3687 |
94191 |
94229 |
+ |
(AAT)n |
Simple_repeat |
| scaffold3687 |
94384 |
94430 |
+ |
GA-rich |
Low_complexity |
| scaffold3687 |
94509 |
94534 |
+ |
(A)n |
Simple_repeat |
| scaffold3687 |
94865 |
94907 |
+ |
(TTATAA)n |
Simple_repeat |
| scaffold3687 |
96176 |
96498 |
+ |
RS4066 |
Unspecified |
| scaffold3687 |
96565 |
96617 |
+ |
RS4281 |
Unspecified |
| scaffold3687 |
96632 |
96731 |
+ |
RS4281 |
Unspecified |
| scaffold3687 |
96712 |
96789 |
+ |
RS4281 |
Unspecified |
| scaffold3687 |
96770 |
96832 |
+ |
RS4281 |
Unspecified |
| scaffold3687 |
96832 |
96895 |
+ |
RS4281 |
Unspecified |
| scaffold3687 |
97637 |
97668 |
+ |
(ACAT)n |
Simple_repeat |
| scaffold3687 |
97825 |
98322 |
+ |
RS337 |
Unspecified |
| scaffold3687 |
98325 |
99760 |
- |
RS4448 |
Unspecified |
| scaffold3687 |
100366 |
100413 |
- |
Copia-85_ST-I |
LTR/Copia |
| scaffold3687 |
100882 |
101140 |
+ |
RS47 |
Unspecified |
| scaffold3687 |
101107 |
101145 |
- |
RS47 |
Unspecified |
| scaffold3687 |
102127 |
102168 |
+ |
(CCA)n |
Simple_repeat |
| scaffold3687 |
102166 |
102462 |
- |
PL688 |
Unspecified |
| scaffold3687 |
106688 |
106729 |
+ |
(CCCCAAC)n |
Simple_repeat |
| scaffold3687 |
106803 |
107171 |
- |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold3687 |
106829 |
106946 |
- |
MuDR-14_SBi |
DNA/MULE-MuDR |
| scaffold3687 |
106913 |
106973 |
- |
MuDR-18_VV |
DNA/MULE-MuDR |
| scaffold3687 |
107532 |
109028 |
- |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold3687 |
107914 |
107958 |
+ |
A-rich |
Low_complexity |