scaffold3779 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold3779 |
27 |
169 |
+ |
PL255 |
Unspecified |
| scaffold3779 |
331 |
684 |
+ |
RS1781 |
Unspecified |
| scaffold3779 |
522 |
892 |
+ |
PL757 |
Unspecified |
| scaffold3779 |
613 |
955 |
+ |
(TAT)n |
Simple_repeat |
| scaffold3779 |
921 |
955 |
+ |
(TAT)n |
Simple_repeat |
| scaffold3779 |
957 |
1322 |
+ |
RS29 |
Unspecified |
| scaffold3779 |
1319 |
1378 |
+ |
(TTA)n |
Simple_repeat |
| scaffold3779 |
1727 |
1836 |
+ |
(AATTC)n |
Simple_repeat |
| scaffold3779 |
2123 |
2166 |
+ |
A-rich |
Low_complexity |
| scaffold3779 |
2247 |
2304 |
+ |
G-rich |
Low_complexity |
| scaffold3779 |
2655 |
2783 |
- |
RS830 |
Unspecified |
| scaffold3779 |
2783 |
3788 |
- |
RS1819 |
Unspecified |
| scaffold3779 |
2944 |
3891 |
+ |
PL394 |
Unspecified |
| scaffold3779 |
3812 |
4327 |
+ |
A-rich |
Low_complexity |
| scaffold3779 |
4287 |
4327 |
+ |
A-rich |
Low_complexity |
| scaffold3779 |
4572 |
4612 |
+ |
ATHILA6C_I-int |
LTR/Gypsy |
| scaffold3779 |
5123 |
5853 |
+ |
RS530 |
Unspecified |
| scaffold3779 |
5210 |
5880 |
+ |
RS695 |
Unspecified |
| scaffold3779 |
5287 |
5878 |
- |
PL411 |
Unspecified |
| scaffold3779 |
5966 |
5997 |
+ |
(AGTTT)n |
Simple_repeat |
| scaffold3779 |
6384 |
6520 |
- |
PL109 |
Unspecified |
| scaffold3779 |
6514 |
6829 |
- |
RS1795 |
Unspecified |
| scaffold3779 |
7215 |
7273 |
- |
RS6946 |
Unspecified |
| scaffold3779 |
7524 |
7568 |
+ |
(CAAGGAC)n |
Simple_repeat |
| scaffold3779 |
7607 |
7647 |
+ |
(CCGG)n |
Simple_repeat |
| scaffold3779 |
8566 |
9100 |
+ |
PL880 |
Unspecified |
| scaffold3779 |
10202 |
11038 |
+ |
gypsy |
gypsy(TransposonPSI) |
| scaffold3779 |
10427 |
10510 |
+ |
Gypsy-46_STu-I |
LTR/Gypsy |
| scaffold3779 |
10484 |
10937 |
+ |
Gypsy-30_GM-I |
LTR/Gypsy |
| scaffold3779 |
11685 |
11715 |
+ |
(GCCG)n |
Simple_repeat |
| scaffold3779 |
12041 |
12100 |
+ |
A-rich |
Low_complexity |
| scaffold3779 |
12343 |
12379 |
+ |
WHAM1_TM-int |
LTR/Gypsy |
| scaffold3779 |
12632 |
12676 |
+ |
(CAAGGAC)n |
Simple_repeat |
| scaffold3779 |
12715 |
12755 |
+ |
(CCGG)n |
Simple_repeat |
| scaffold3779 |
13672 |
13861 |
- |
RS6946 |
Unspecified |
| scaffold3779 |
13711 |
13880 |
+ |
RS2980 |
Unspecified |
| scaffold3779 |
14022 |
14251 |
- |
RS4760 |
Unspecified |
| scaffold3779 |
14276 |
14376 |
- |
RS5415 |
Unspecified |
| scaffold3779 |
14390 |
14622 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold3779 |
14652 |
14677 |
+ |
(T)n |
Simple_repeat |
| scaffold3779 |
14826 |
15054 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold3779 |
15068 |
15474 |
+ |
RS884 |
Unspecified |
| scaffold3779 |
16097 |
16119 |
+ |
(T)n |
Simple_repeat |
| scaffold3779 |
16303 |
16347 |
+ |
(TTTAA)n |
Simple_repeat |
| scaffold3779 |
17171 |
17248 |
+ |
A-rich |
Low_complexity |
| scaffold3779 |
17791 |
17865 |
+ |
A-rich |
Low_complexity |
| scaffold3779 |
18059 |
18235 |
+ |
Gypsy-46_Mad-I |
LTR/Gypsy |
| scaffold3779 |
19124 |
19572 |
+ |
Gypsy-46_Mad-I |
LTR/Gypsy |
| scaffold3779 |
20363 |
20806 |
+ |
RS279 |
Unspecified |
| scaffold3779 |
20891 |
20970 |
+ |
(ACTACA)n |
Simple_repeat |
| scaffold3779 |
21076 |
21246 |
+ |
(AAC)n |
Simple_repeat |
| scaffold3779 |
21792 |
22243 |
+ |
PL255 |
Unspecified |
| scaffold3779 |
22243 |
22302 |
+ |
Gypsy-46_Mad-I |
LTR/Gypsy |
| scaffold3779 |
22499 |
22778 |
+ |
Gypsy-46_Mad-I |
LTR/Gypsy |
| scaffold3779 |
23446 |
23910 |
+ |
Gypsy-46_Mad-I |
LTR/Gypsy |
| scaffold3779 |
25179 |
26349 |
+ |
Gypsy-46_Mad-I |
LTR/Gypsy |
| scaffold3779 |
26535 |
26555 |
+ |
(A)n |
Simple_repeat |
| scaffold3779 |
26878 |
27022 |
+ |
(TT)n |
Simple_repeat |
| scaffold3779 |
27068 |
27271 |
+ |
PL292 |
Unspecified |
| scaffold3779 |
27263 |
29460 |
+ |
Gypsy-46_Mad-I |
LTR/Gypsy |
| scaffold3779 |
28236 |
28762 |
+ |
RIRE1_I-int |
LTR/Copia |
| scaffold3779 |
29543 |
29603 |
+ |
(A)n |
Simple_repeat |
| scaffold3779 |
32628 |
32747 |
- |
RS7591 |
Unspecified |
| scaffold3779 |
32849 |
32870 |
+ |
A-rich |
Low_complexity |
| scaffold3779 |
32871 |
32921 |
+ |
(AAT)n |
Simple_repeat |
| scaffold3779 |
32922 |
32937 |
+ |
A-rich |
Low_complexity |
| scaffold3779 |
34339 |
34413 |
+ |
A-rich |
Low_complexity |
| scaffold3779 |
34599 |
34737 |
- |
RS5616 |
Unspecified |
| scaffold3779 |
35126 |
35170 |
+ |
(AAGATGA)n |
Simple_repeat |
| scaffold3779 |
35319 |
35407 |
+ |
(ATATAG)n |
Simple_repeat |
| scaffold3779 |
35847 |
36090 |
- |
RS581 |
Unspecified |
| scaffold3779 |
36508 |
36563 |
+ |
A-rich |
Low_complexity |
| scaffold3779 |
37054 |
37129 |
+ |
(TTATAT)n |
Simple_repeat |
| scaffold3779 |
42135 |
42181 |
+ |
G-rich |
Low_complexity |
| scaffold3779 |
42215 |
42270 |
+ |
(TTA)n |
Simple_repeat |
| scaffold3779 |
44716 |
44831 |
+ |
A-rich |
Low_complexity |
| scaffold3779 |
44847 |
44893 |
+ |
(TTG)n |
Simple_repeat |
| scaffold3779 |
44894 |
44918 |
+ |
(ATT)n |
Simple_repeat |
| scaffold3779 |
45574 |
45607 |
+ |
(TACAAC)n |
Simple_repeat |
| scaffold3779 |
46135 |
46163 |
+ |
(TTTCA)n |
Simple_repeat |
| scaffold3779 |
46266 |
46291 |
+ |
(T)n |
Simple_repeat |
| scaffold3779 |
46356 |
46392 |
+ |
G-rich |
Low_complexity |
| scaffold3779 |
46846 |
47075 |
- |
PL331 |
Unspecified |
| scaffold3779 |
47792 |
48190 |
- |
PL807 |
Unspecified |
| scaffold3779 |
48425 |
48663 |
+ |
RS4 |
Unspecified |
| scaffold3779 |
48765 |
48814 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold3779 |
49047 |
49063 |
+ |
(A)n |
Simple_repeat |
| scaffold3779 |
49211 |
49303 |
+ |
(TTTATT)n |
Simple_repeat |
| scaffold3779 |
49382 |
49427 |
+ |
(ATAATT)n |
Simple_repeat |
| scaffold3779 |
49583 |
49890 |
- |
RS586 |
Unspecified |
| scaffold3779 |
49673 |
49890 |
+ |
RS356 |
Unspecified |
| scaffold3779 |
49993 |
50076 |
+ |
A-rich |
Low_complexity |
| scaffold3779 |
51111 |
51906 |
+ |
RS2778 |
Unspecified |
| scaffold3779 |
52310 |
52543 |
- |
RS7664 |
Unspecified |
| scaffold3779 |
54091 |
54381 |
- |
LTR2-ZM_LTR |
LTR |
| scaffold3779 |
54420 |
55419 |
+ |
ATCopia94_I-int |
LTR/Copia |
| scaffold3779 |
55576 |
55622 |
+ |
RS10453 |
Unspecified |
| scaffold3779 |
55682 |
55722 |
+ |
A-rich |
Low_complexity |
| scaffold3779 |
55896 |
56094 |
+ |
RS10453 |
Unspecified |
| scaffold3779 |
58900 |
58960 |
+ |
A-rich |
Low_complexity |
| scaffold3779 |
59353 |
59656 |
+ |
PL255 |
Unspecified |
| scaffold3779 |
59740 |
60036 |
- |
RS4949 |
Unspecified |
| scaffold3779 |
59762 |
60026 |
+ |
RS41 |
Unspecified |
| scaffold3779 |
60212 |
60465 |
+ |
RS586 |
Unspecified |
| scaffold3779 |
60569 |
60955 |
+ |
Copia-82_GM-I |
LTR/Copia |
| scaffold3779 |
60569 |
60664 |
+ |
Copia-82_GM-I |
LTR/Copia |
| scaffold3779 |
60644 |
60955 |
+ |
RS614 |
Unspecified |
| scaffold3779 |
60994 |
61290 |
+ |
RS160 |
Unspecified |
| scaffold3779 |
61289 |
61574 |
+ |
PL504 |
Unspecified |
| scaffold3779 |
63807 |
63890 |
+ |
(TAA)n |
Simple_repeat |
| scaffold3779 |
65405 |
66364 |
+ |
LINE |
LINE(TransposonPSI) |
| scaffold3779 |
67722 |
67743 |
+ |
(ATA)n |
Simple_repeat |
| scaffold3779 |
68146 |
68179 |
+ |
(TAA)n |
Simple_repeat |
| scaffold3779 |
68307 |
68386 |
+ |
(ATA)n |
Simple_repeat |
| scaffold3779 |
68527 |
68554 |
+ |
(T)n |
Simple_repeat |
| scaffold3779 |
68743 |
69142 |
+ |
PL504 |
Unspecified |
| scaffold3779 |
69143 |
69208 |
- |
RS160 |
Unspecified |
| scaffold3779 |
70140 |
70188 |
+ |
(TTATTAA)n |
Simple_repeat |
| scaffold3779 |
70262 |
70291 |
+ |
(AATAA)n |
Simple_repeat |
| scaffold3779 |
71157 |
71190 |
+ |
(A)n |
Simple_repeat |
| scaffold3779 |
74551 |
74584 |
+ |
A-rich |
Low_complexity |
| scaffold3779 |
75135 |
75193 |
+ |
(ATTTAT)n |
Simple_repeat |
| scaffold3779 |
75770 |
75822 |
+ |
A-rich |
Low_complexity |
| scaffold3779 |
76324 |
77533 |
- |
RS420 |
Unspecified |
| scaffold3779 |
77671 |
77855 |
- |
EnSpm-3_STu |
DNA/CMC-EnSpm |
| scaffold3779 |
77932 |
78082 |
- |
PL275 |
Unspecified |
| scaffold3779 |
77934 |
78118 |
- |
RS111 |
Unspecified |
| scaffold3779 |
78508 |
78547 |
+ |
(CGTGTC)n |
Simple_repeat |
| scaffold3779 |
79123 |
79705 |
- |
ENSPM1_PT |
DNA/CMC-EnSpm |
| scaffold3779 |
79744 |
79945 |
- |
PL522 |
Unspecified |
| scaffold3779 |
81534 |
82804 |
- |
RS387 |
Unspecified |
| scaffold3779 |
84410 |
85517 |
- |
PL495 |
Unspecified |
| scaffold3779 |
85791 |
85835 |
+ |
(TGTAGT)n |
Simple_repeat |
| scaffold3779 |
86029 |
86356 |
- |
PL921 |
Unspecified |
| scaffold3779 |
86977 |
88126 |
- |
PL554 |
Unspecified |
| scaffold3779 |
88541 |
88597 |
- |
Gypsy-LTR_MT |
LTR/Gypsy |
| scaffold3779 |
88731 |
88958 |
- |
Gypsy-I_MT |
LTR/Gypsy |
| scaffold3779 |
90726 |
91914 |
- |
Gypsy-I_MT |
LTR/Gypsy |
| scaffold3779 |
92103 |
92166 |
+ |
(TTTG)n |
Simple_repeat |
| scaffold3779 |
92349 |
92373 |
+ |
(TCT)n |
Simple_repeat |
| scaffold3779 |
92383 |
92425 |
+ |
(TTGAGTTGC)n |
Simple_repeat |
| scaffold3779 |
93089 |
93184 |
- |
Gypsy-I_MT |
LTR/Gypsy |
| scaffold3779 |
93409 |
93454 |
- |
PL947 |
Unspecified |
| scaffold3779 |
93868 |
93951 |
+ |
(ACC)n |
Simple_repeat |
| scaffold3779 |
94461 |
94482 |
+ |
(T)n |
Simple_repeat |
| scaffold3779 |
96320 |
96755 |
- |
PL947 |
Unspecified |
| scaffold3779 |
97372 |
98149 |
+ |
PL956 |
Unspecified |
| scaffold3779 |
98409 |
98433 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold3779 |
98453 |
99181 |
- |
RS1870 |
Unspecified |
| scaffold3779 |
100042 |
100083 |
+ |
(TCATCTA)n |
Simple_repeat |
| scaffold3779 |
100253 |
100290 |
+ |
(TTTGATT)n |
Simple_repeat |
| scaffold3779 |
100411 |
100442 |
+ |
(TTATT)n |
Simple_repeat |
| scaffold3779 |
101122 |
101162 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold3779 |
101922 |
102251 |
+ |
PL683 |
Unspecified |
| scaffold3779 |
102249 |
102372 |
+ |
RS217 |
Unspecified |
| scaffold3779 |
102365 |
102486 |
+ |
PL398 |
Unspecified |
| scaffold3779 |
102969 |
103001 |
+ |
(TATTTT)n |
Simple_repeat |
| scaffold3779 |
103483 |
103612 |
- |
TRAMET1 |
DNA/TcMar-Stowaway |
| scaffold3779 |
103719 |
103780 |
+ |
(ATA)n |
Simple_repeat |
| scaffold3779 |
106397 |
106428 |
+ |
(TTTAGG)n |
Simple_repeat |
| scaffold3779 |
106460 |
106520 |
+ |
RS1746 |
Unspecified |
| scaffold3779 |
106819 |
106851 |
+ |
(T)n |
Simple_repeat |
| scaffold3779 |
107581 |
107610 |
+ |
(TTCGGG)n |
Simple_repeat |
| scaffold3779 |
107800 |
107941 |
+ |
RS16382 |
Unspecified |
| scaffold3779 |
108026 |
108057 |
+ |
(TTACGT)n |
Simple_repeat |
| scaffold3779 |
108375 |
108474 |
- |
RS8546 |
Unspecified |
| scaffold3779 |
109120 |
109146 |
+ |
(GGGAG)n |
Simple_repeat |
| scaffold3779 |
109285 |
109324 |
+ |
(TCCCT)n |
Simple_repeat |
| scaffold3779 |
109609 |
109714 |
- |
RS16382 |
Unspecified |
| scaffold3779 |
111079 |
111097 |
+ |
(T)n |
Simple_repeat |
| scaffold3779 |
111196 |
111341 |
- |
RS4968 |
Unspecified |
| scaffold3779 |
111568 |
111735 |
- |
RS5734 |
Unspecified |
| scaffold3779 |
113765 |
113984 |
+ |
RS6049 |
Unspecified |
| scaffold3779 |
114038 |
114175 |
+ |
RS4851 |
Unspecified |
| scaffold3779 |
114176 |
114287 |
+ |
RS2233 |
Unspecified |
| scaffold3779 |
114455 |
114759 |
+ |
RS10630 |
Unspecified |
| scaffold3779 |
114985 |
115023 |
+ |
(TTTTTAT)n |
Simple_repeat |
| scaffold3779 |
116072 |
116109 |
+ |
(AGTTTG)n |
Simple_repeat |
| scaffold3779 |
117811 |
117921 |
- |
RS836 |
Unspecified |
| scaffold3779 |
119154 |
119183 |
+ |
DIASPORA_I-int |
LTR/Gypsy |
| scaffold3779 |
119160 |
119253 |
+ |
Gypsy-3_PD-I |
LTR/Gypsy |
| scaffold3779 |
119421 |
119562 |
- |
Novosib-6_CR |
DNA/Novosib |
| scaffold3779 |
119563 |
119728 |
+ |
(TACACA)n |
Simple_repeat |
| scaffold3779 |
119729 |
119887 |
- |
Novosib-6_CR |
DNA/Novosib |
| scaffold3779 |
119814 |
119913 |
+ |
(CATATA)n |
Simple_repeat |
| scaffold3779 |
119947 |
120009 |
+ |
(AC)n |
Simple_repeat |
| scaffold3779 |
121821 |
121903 |
+ |
A-rich |
Low_complexity |
| scaffold3779 |
122155 |
122225 |
+ |
A-rich |
Low_complexity |
| scaffold3779 |
122333 |
122396 |
+ |
(TAATT)n |
Simple_repeat |
| scaffold3779 |
122468 |
122534 |
+ |
(ATTTTTA)n |
Simple_repeat |
| scaffold3779 |
122632 |
122685 |
+ |
(TAT)n |
Simple_repeat |
| scaffold3779 |
122759 |
123044 |
- |
RS4686 |
Unspecified |