scaffold4192 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold4192 |
145 |
621 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold4192 |
187 |
591 |
- |
Copia-71_ST-I |
LTR/Copia |
| scaffold4192 |
621 |
1715 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold4192 |
624 |
1571 |
- |
Copia-71_ST-I |
LTR/Copia |
| scaffold4192 |
1831 |
2934 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold4192 |
2081 |
2811 |
- |
Copia-71_ST-I |
LTR/Copia |
| scaffold4192 |
3009 |
3377 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold4192 |
6521 |
6555 |
- |
RS1627 |
Unspecified |
| scaffold4192 |
7314 |
7369 |
+ |
A-rich |
Low_complexity |
| scaffold4192 |
7490 |
7525 |
+ |
(GCCG)n |
Simple_repeat |
| scaffold4192 |
8516 |
10159 |
+ |
LINE |
LINE(TransposonPSI) |
| scaffold4192 |
8780 |
8836 |
+ |
SHALINE10_MT |
LINE/L1 |
| scaffold4192 |
9053 |
9900 |
+ |
SHALINE10_MT |
LINE/L1 |
| scaffold4192 |
11043 |
11076 |
+ |
(GTGG)n |
Simple_repeat |
| scaffold4192 |
11930 |
11947 |
+ |
(AT)n |
Simple_repeat |
| scaffold4192 |
11950 |
13537 |
- |
RS406 |
Unspecified |
| scaffold4192 |
13972 |
14123 |
+ |
(TGTT)n |
Simple_repeat |
| scaffold4192 |
13972 |
14528 |
+ |
(TGTT)n |
Simple_repeat |
| scaffold4192 |
14076 |
14528 |
+ |
RS3897 |
Unspecified |
| scaffold4192 |
14802 |
15781 |
+ |
RS676 |
Unspecified |
| scaffold4192 |
15779 |
16409 |
+ |
RS189 |
Unspecified |
| scaffold4192 |
19698 |
19743 |
+ |
A-rich |
Low_complexity |
| scaffold4192 |
20286 |
20365 |
- |
Gypsy-70-I_ZM |
LTR/Gypsy |
| scaffold4192 |
20384 |
21698 |
- |
Gypsy-70-I_ZM |
LTR/Gypsy |
| scaffold4192 |
21926 |
23273 |
- |
RAM12_I-int |
LTR/Gypsy |
| scaffold4192 |
23442 |
23541 |
- |
Gypsy-7_CP-I |
LTR/Gypsy |
| scaffold4192 |
23683 |
23765 |
- |
Gypsy-7_CP-I |
LTR/Gypsy |
| scaffold4192 |
26054 |
26107 |
+ |
(AT)n |
Simple_repeat |
| scaffold4192 |
26587 |
27320 |
- |
RS530 |
Unspecified |
| scaffold4192 |
27300 |
27336 |
+ |
(CCGG)n |
Simple_repeat |
| scaffold4192 |
27576 |
27620 |
+ |
(GTTTATT)n |
Simple_repeat |
| scaffold4192 |
28255 |
28786 |
+ |
PL880 |
Unspecified |
| scaffold4192 |
29391 |
29682 |
+ |
RS3329 |
Unspecified |
| scaffold4192 |
31259 |
31668 |
- |
RS5034 |
Unspecified |
| scaffold4192 |
31657 |
31729 |
+ |
PL394 |
Unspecified |
| scaffold4192 |
31814 |
31859 |
+ |
(CTTTCGA)n |
Simple_repeat |
| scaffold4192 |
32114 |
32151 |
+ |
(A)n |
Simple_repeat |
| scaffold4192 |
32775 |
32811 |
+ |
(CCGG)n |
Simple_repeat |
| scaffold4192 |
33051 |
33095 |
+ |
(GTTTATT)n |
Simple_repeat |
| scaffold4192 |
33235 |
33356 |
+ |
RS143 |
Unspecified |
| scaffold4192 |
33356 |
33897 |
+ |
RS189 |
Unspecified |
| scaffold4192 |
34031 |
34073 |
+ |
(TCAA)n |
Simple_repeat |
| scaffold4192 |
34738 |
35487 |
+ |
PL229 |
Unspecified |
| scaffold4192 |
35396 |
35650 |
+ |
PL772 |
Unspecified |
| scaffold4192 |
35674 |
35748 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold4192 |
35874 |
36289 |
- |
PL713 |
Unspecified |
| scaffold4192 |
36291 |
36698 |
+ |
PL350 |
Unspecified |
| scaffold4192 |
36717 |
36733 |
+ |
(TA)n |
Simple_repeat |
| scaffold4192 |
37002 |
37039 |
+ |
(AACTAA)n |
Simple_repeat |
| scaffold4192 |
37937 |
37943 |
+ |
(GTGTAT)n |
Simple_repeat |
| scaffold4192 |
37944 |
37978 |
+ |
(TG)n |
Simple_repeat |
| scaffold4192 |
37977 |
38011 |
+ |
(GTA)n |
Simple_repeat |
| scaffold4192 |
38012 |
38035 |
+ |
(GTGTAT)n |
Simple_repeat |
| scaffold4192 |
38301 |
38357 |
+ |
A-rich |
Low_complexity |
| scaffold4192 |
38403 |
38462 |
+ |
A-rich |
Low_complexity |
| scaffold4192 |
38600 |
38728 |
- |
PL44 |
Unspecified |
| scaffold4192 |
38727 |
39031 |
- |
RS3890 |
Unspecified |
| scaffold4192 |
39004 |
39597 |
- |
Gypsy-2_Mad-I |
LTR/Gypsy |
| scaffold4192 |
40080 |
40111 |
+ |
(A)n |
Simple_repeat |
| scaffold4192 |
40112 |
40128 |
+ |
A-rich |
Low_complexity |
| scaffold4192 |
40125 |
40212 |
+ |
(CCACCG)n |
Simple_repeat |
| scaffold4192 |
40224 |
40319 |
+ |
A-rich |
Low_complexity |
| scaffold4192 |
40763 |
40780 |
+ |
(T)n |
Simple_repeat |
| scaffold4192 |
42545 |
44074 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold4192 |
46225 |
46253 |
+ |
(T)n |
Simple_repeat |
| scaffold4192 |
47063 |
47097 |
+ |
(T)n |
Simple_repeat |
| scaffold4192 |
47380 |
47408 |
+ |
(TTTTTGT)n |
Simple_repeat |
| scaffold4192 |
47409 |
47427 |
+ |
(T)n |
Simple_repeat |
| scaffold4192 |
47428 |
47479 |
+ |
A-rich |
Low_complexity |
| scaffold4192 |
47964 |
48038 |
- |
PL624 |
Unspecified |
| scaffold4192 |
48347 |
48589 |
- |
RS4 |
Unspecified |
| scaffold4192 |
48802 |
48869 |
- |
RS562 |
Unspecified |
| scaffold4192 |
48877 |
49194 |
+ |
RS1988 |
Unspecified |
| scaffold4192 |
49192 |
49356 |
+ |
RS562 |
Unspecified |
| scaffold4192 |
49587 |
50007 |
+ |
RS562 |
Unspecified |
| scaffold4192 |
50106 |
50202 |
+ |
RS562 |
Unspecified |
| scaffold4192 |
50342 |
50584 |
+ |
RS1967 |
Unspecified |
| scaffold4192 |
51121 |
51388 |
+ |
RS1967 |
Unspecified |
| scaffold4192 |
51426 |
51475 |
+ |
(T)n |
Simple_repeat |
| scaffold4192 |
51596 |
51615 |
+ |
(A)n |
Simple_repeat |
| scaffold4192 |
51644 |
51689 |
+ |
(T)n |
Simple_repeat |
| scaffold4192 |
51727 |
51759 |
+ |
(AACAA)n |
Simple_repeat |
| scaffold4192 |
51904 |
52038 |
+ |
RS330 |
Unspecified |
| scaffold4192 |
52034 |
52191 |
+ |
PL470 |
Unspecified |
| scaffold4192 |
52353 |
52610 |
+ |
RS533 |
Unspecified |
| scaffold4192 |
52655 |
52701 |
+ |
(TA)n |
Simple_repeat |
| scaffold4192 |
52860 |
53142 |
+ |
PL470 |
Unspecified |
| scaffold4192 |
53307 |
53479 |
- |
RS135 |
Unspecified |
| scaffold4192 |
53485 |
53583 |
+ |
(TTC)n |
Simple_repeat |
| scaffold4192 |
53584 |
53663 |
+ |
(TTA)n |
Simple_repeat |
| scaffold4192 |
53803 |
53848 |
+ |
A-rich |
Low_complexity |
| scaffold4192 |
54014 |
54060 |
+ |
A-rich |
Low_complexity |
| scaffold4192 |
54057 |
54087 |
+ |
(T)n |
Simple_repeat |
| scaffold4192 |
54935 |
55106 |
+ |
RS7481 |
Unspecified |
| scaffold4192 |
58450 |
59794 |
+ |
Atlantys1_I-int |
LTR/Gypsy |
| scaffold4192 |
59894 |
60015 |
+ |
Gypsy-38_Mad-I |
LTR/Gypsy |
| scaffold4192 |
60375 |
60415 |
+ |
(CAACAG)n |
Simple_repeat |
| scaffold4192 |
60542 |
61302 |
+ |
Gypsy-38_Mad-I |
LTR/Gypsy |
| scaffold4192 |
61467 |
61671 |
+ |
Gypsy-38_Mad-I |
LTR/Gypsy |
| scaffold4192 |
62019 |
62075 |
+ |
(ACAT)n |
Simple_repeat |
| scaffold4192 |
62078 |
62106 |
+ |
(CA)n |
Simple_repeat |
| scaffold4192 |
64548 |
64567 |
+ |
(A)n |
Simple_repeat |
| scaffold4192 |
64911 |
65328 |
+ |
RS4334 |
Unspecified |
| scaffold4192 |
65693 |
66394 |
- |
PL596 |
Unspecified |
| scaffold4192 |
66602 |
66724 |
+ |
RS5798 |
Unspecified |
| scaffold4192 |
66805 |
66873 |
+ |
GA-rich |
Low_complexity |
| scaffold4192 |
67033 |
67072 |
+ |
(TCCCT)n |
Simple_repeat |
| scaffold4192 |
67185 |
67734 |
- |
RS72 |
Unspecified |
| scaffold4192 |
67940 |
68138 |
- |
RS757 |
Unspecified |
| scaffold4192 |
67973 |
68205 |
+ |
RS13348 |
Unspecified |
| scaffold4192 |
68277 |
68379 |
+ |
RS5363 |
Unspecified |
| scaffold4192 |
68615 |
69005 |
+ |
RS12567 |
Unspecified |
| scaffold4192 |
69496 |
69640 |
+ |
RS10300 |
Unspecified |
| scaffold4192 |
69963 |
69973 |
+ |
(TCATAT)n |
Simple_repeat |
| scaffold4192 |
69974 |
70008 |
+ |
(AT)n |
Simple_repeat |
| scaffold4192 |
70009 |
70040 |
+ |
(TCATAT)n |
Simple_repeat |
| scaffold4192 |
70201 |
70322 |
- |
RS12471 |
Unspecified |
| scaffold4192 |
70396 |
70981 |
+ |
Copia-19_ST-I |
LTR/Copia |
| scaffold4192 |
71921 |
72762 |
+ |
Copia-78_ST-I |
LTR/Copia |
| scaffold4192 |
73207 |
74738 |
+ |
Copia-78_ST-I |
LTR/Copia |
| scaffold4192 |
74852 |
74890 |
+ |
(AT)n |
Simple_repeat |
| scaffold4192 |
76154 |
76195 |
+ |
(TTTTAG)n |
Simple_repeat |
| scaffold4192 |
76236 |
76587 |
+ |
RS12964 |
Unspecified |
| scaffold4192 |
76327 |
76686 |
+ |
RS12964 |
Unspecified |
| scaffold4192 |
76429 |
76693 |
+ |
RS12964 |
Unspecified |
| scaffold4192 |
76521 |
76720 |
+ |
RS12964 |
Unspecified |
| scaffold4192 |
77180 |
77909 |
+ |
RS712 |
Unspecified |
| scaffold4192 |
78454 |
78632 |
+ |
RS4234 |
Unspecified |
| scaffold4192 |
78654 |
78882 |
+ |
RS10850 |
Unspecified |
| scaffold4192 |
78877 |
81128 |
+ |
Copia-84_GM-I |
LTR/Copia |
| scaffold4192 |
81323 |
83151 |
+ |
Copia-69_GM-I |
LTR/Copia |
| scaffold4192 |
81323 |
83001 |
+ |
Copia-69_GM-I |
LTR/Copia |
| scaffold4192 |
82973 |
83151 |
+ |
RS4234 |
Unspecified |
| scaffold4192 |
83173 |
83401 |
+ |
RS10850 |
Unspecified |
| scaffold4192 |
83445 |
83466 |
+ |
(ATGT)n |
Simple_repeat |
| scaffold4192 |
83539 |
84060 |
- |
Copia-17_ST-I |
LTR/Copia |
| scaffold4192 |
84067 |
84261 |
- |
RS17764 |
Unspecified |
| scaffold4192 |
84325 |
84374 |
+ |
(T)n |
Simple_repeat |
| scaffold4192 |
84387 |
84821 |
+ |
(TATTTT)n |
Simple_repeat |
| scaffold4192 |
84387 |
84420 |
+ |
(TATTTT)n |
Simple_repeat |
| scaffold4192 |
84415 |
84821 |
- |
RS2718 |
Unspecified |
| scaffold4192 |
85122 |
86103 |
- |
Copia-78_ST-I |
LTR/Copia |
| scaffold4192 |
87297 |
87341 |
+ |
(CTT)n |
Simple_repeat |
| scaffold4192 |
88521 |
88565 |
+ |
A-rich |
Low_complexity |
| scaffold4192 |
89141 |
89183 |
+ |
A-rich |
Low_complexity |
| scaffold4192 |
92531 |
92616 |
+ |
(TGTA)n |
Simple_repeat |
| scaffold4192 |
93778 |
93841 |
+ |
(TTGTCT)n |
Simple_repeat |
| scaffold4192 |
94421 |
95117 |
+ |
PL647 |
Unspecified |
| scaffold4192 |
99515 |
99569 |
- |
PL495 |
Unspecified |