scaffold42643 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold42643 |
3 |
197 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold42643 |
3 |
290 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold42643 |
7 |
175 |
+ |
TORTL1 |
LTR/Copia |
| scaffold42643 |
7 |
290 |
+ |
TORTL1 |
LTR/Copia |
| scaffold42643 |
115 |
290 |
+ |
RS1807 |
Unspecified |
| scaffold42643 |
368 |
705 |
+ |
Gret1_I-int |
LTR/Gypsy |
| scaffold42643 |
783 |
805 |
+ |
(CAAA)n |
Simple_repeat |
| scaffold42643 |
826 |
866 |
+ |
(A)n |
Simple_repeat |
| scaffold42643 |
2205 |
3253 |
+ |
RS60 |
Unspecified |
| scaffold42643 |
4644 |
4852 |
+ |
RS4601 |
Unspecified |
| scaffold42643 |
6090 |
6113 |
+ |
(T)n |
Simple_repeat |
| scaffold42643 |
6577 |
7221 |
- |
COP_I_MT-int |
LTR/Copia |
| scaffold42643 |
8461 |
8719 |
- |
RS138 |
Unspecified |
| scaffold42643 |
11420 |
11450 |
+ |
(GTTAAT)n |
Simple_repeat |
| scaffold42643 |
11570 |
11750 |
+ |
(TTA)n |
Simple_repeat |
| scaffold42643 |
11570 |
11600 |
+ |
(TTA)n |
Simple_repeat |
| scaffold42643 |
11589 |
11750 |
- |
RS15364 |
Unspecified |
| scaffold42643 |
11618 |
11849 |
+ |
RS1186 |
Unspecified |
| scaffold42643 |
13848 |
14060 |
- |
RS4601 |
Unspecified |
| scaffold42643 |
15283 |
15381 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold42643 |
16685 |
16863 |
+ |
RS503 |
Unspecified |
| scaffold42643 |
16861 |
17062 |
- |
RS152 |
Unspecified |
| scaffold42643 |
18043 |
18148 |
+ |
(TTG)n |
Simple_repeat |
| scaffold42643 |
18773 |
18819 |
+ |
(T)n |
Simple_repeat |
| scaffold42643 |
18939 |
19004 |
+ |
G-rich |
Low_complexity |
| scaffold42643 |
19081 |
19110 |
+ |
(A)n |
Simple_repeat |
| scaffold42643 |
21640 |
21848 |
- |
RS4601 |
Unspecified |
| scaffold42643 |
23084 |
23182 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold42643 |
24425 |
24478 |
+ |
(TTAT)n |
Simple_repeat |
| scaffold42643 |
24463 |
24509 |
+ |
A-rich |
Low_complexity |
| scaffold42643 |
25401 |
25454 |
+ |
A-rich |
Low_complexity |
| scaffold42643 |
25935 |
25982 |
+ |
(TTA)n |
Simple_repeat |
| scaffold42643 |
26007 |
26327 |
- |
RS976 |
Unspecified |
| scaffold42643 |
27006 |
27034 |
+ |
(AAATA)n |
Simple_repeat |
| scaffold42643 |
27224 |
27273 |
+ |
A-rich |
Low_complexity |
| scaffold42643 |
28096 |
28122 |
+ |
(GAC)n |
Simple_repeat |
| scaffold42643 |
30221 |
30339 |
- |
RS5437 |
Unspecified |
| scaffold42643 |
30244 |
30357 |
+ |
RS7601 |
Unspecified |
| scaffold42643 |
30391 |
30641 |
+ |
RS1016 |
Unspecified |
| scaffold42643 |
30652 |
30870 |
+ |
RS4601 |
Unspecified |
| scaffold42643 |
31648 |
31680 |
+ |
(ATCATT)n |
Simple_repeat |
| scaffold42643 |
32294 |
32486 |
- |
PL622 |
Unspecified |
| scaffold42643 |
32500 |
32622 |
+ |
RS281 |
Unspecified |
| scaffold42643 |
32835 |
32866 |
+ |
(CAC)n |
Simple_repeat |
| scaffold42643 |
33741 |
33913 |
+ |
RS281 |
Unspecified |
| scaffold42643 |
34492 |
34582 |
+ |
(TTTATT)n |
Simple_repeat |
| scaffold42643 |
35599 |
35633 |
+ |
(TAC)n |
Simple_repeat |
| scaffold42643 |
37967 |
38175 |
+ |
RS4601 |
Unspecified |
| scaffold42643 |
39841 |
40085 |
- |
RS193 |
Unspecified |
| scaffold42643 |
40201 |
40462 |
+ |
RS82 |
Unspecified |
| scaffold42643 |
40606 |
40642 |
+ |
(AACAATT)n |
Simple_repeat |
| scaffold42643 |
41080 |
41198 |
- |
RS356 |
Unspecified |
| scaffold42643 |
41272 |
41419 |
- |
RS14624 |
Unspecified |
| scaffold42643 |
41288 |
41553 |
- |
RS106 |
Unspecified |
| scaffold42643 |
41733 |
41827 |
- |
RS356 |
Unspecified |
| scaffold42643 |
42257 |
42567 |
- |
Copia-32-I_VV |
LTR/Copia |
| scaffold42643 |
42609 |
43054 |
+ |
PL260 |
Unspecified |
| scaffold42643 |
43539 |
43801 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold42643 |
44826 |
44861 |
+ |
(AATAAT)n |
Simple_repeat |
| scaffold42643 |
44999 |
45063 |
+ |
A-rich |
Low_complexity |
| scaffold42643 |
45858 |
45891 |
+ |
(TCATTA)n |
Simple_repeat |
| scaffold42643 |
47099 |
47314 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold42643 |
47315 |
47389 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold42643 |
47539 |
47914 |
- |
RS703 |
Unspecified |
| scaffold42643 |
48119 |
48432 |
+ |
PL429 |
Unspecified |
| scaffold42643 |
48606 |
48629 |
+ |
(A)n |
Simple_repeat |
| scaffold42643 |
49429 |
49483 |
+ |
RS2105 |
Unspecified |
| scaffold42643 |
49793 |
49853 |
+ |
(TGTTTTG)n |
Simple_repeat |
| scaffold42643 |
50101 |
50522 |
+ |
RS2105 |
Unspecified |
| scaffold42643 |
50595 |
50979 |
+ |
Copia-86_VV-I |
LTR/Copia |
| scaffold42643 |
51618 |
52348 |
+ |
Copia-82_GM-I |
LTR/Copia |
| scaffold42643 |
52390 |
52612 |
- |
PL658 |
Unspecified |
| scaffold42643 |
52423 |
53025 |
- |
PL561 |
Unspecified |
| scaffold42643 |
54536 |
54575 |
- |
RS17 |
Unspecified |
| scaffold42643 |
54536 |
54589 |
+ |
RS16604 |
Unspecified |
| scaffold42643 |
54846 |
54884 |
+ |
GA-rich |
Low_complexity |
| scaffold42643 |
55167 |
55200 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold42643 |
55201 |
55319 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold42643 |
55320 |
55363 |
+ |
RS17 |
Unspecified |
| scaffold42643 |
57510 |
57534 |
+ |
(ACTTC)n |
Simple_repeat |
| scaffold42643 |
60679 |
60726 |
+ |
(TTAATC)n |
Simple_repeat |
| scaffold42643 |
61473 |
61494 |
+ |
(ATT)n |
Simple_repeat |
| scaffold42643 |
61504 |
61584 |
+ |
A-rich |
Low_complexity |
| scaffold42643 |
61628 |
61655 |
+ |
(A)n |
Simple_repeat |
| scaffold42643 |
63643 |
63706 |
+ |
(AATCA)n |
Simple_repeat |
| scaffold42643 |
63903 |
64393 |
+ |
RS11594 |
Unspecified |
| scaffold42643 |
67530 |
67603 |
+ |
(AATACAA)n |
Simple_repeat |
| scaffold42643 |
68725 |
68740 |
+ |
(CGGCCT)n |
Simple_repeat |
| scaffold42643 |
68741 |
68823 |
+ |
(GCCTCA)n |
Simple_repeat |
| scaffold42643 |
68825 |
68862 |
- |
Copia-54_PTr-I |
LTR/Copia |
| scaffold42643 |
68865 |
68915 |
+ |
(CAGCCG)n |
Simple_repeat |
| scaffold42643 |
70503 |
70642 |
+ |
RS108 |
Unspecified |
| scaffold42643 |
70538 |
70690 |
+ |
RS108 |
Unspecified |
| scaffold42643 |
72644 |
73372 |
- |
RS158 |
Unspecified |
| scaffold42643 |
74342 |
74412 |
+ |
A-rich |
Low_complexity |
| scaffold42643 |
74804 |
74822 |
+ |
(T)n |
Simple_repeat |
| scaffold42643 |
75351 |
75430 |
+ |
(AT)n |
Simple_repeat |
| scaffold42643 |
76261 |
76349 |
+ |
(TGCTTA)n |
Simple_repeat |
| scaffold42643 |
77986 |
78041 |
+ |
(GGCTGA)n |
Simple_repeat |
| scaffold42643 |
78875 |
78905 |
+ |
(TTTGC)n |
Simple_repeat |
| scaffold42643 |
78906 |
78921 |
+ |
(TATTT)n |
Simple_repeat |
| scaffold42643 |
80092 |
80110 |
+ |
(A)n |
Simple_repeat |
| scaffold42643 |
80390 |
80564 |
+ |
RS806 |
Unspecified |
| scaffold42643 |
80578 |
80599 |
+ |
(CA)n |
Simple_repeat |
| scaffold42643 |
81541 |
83477 |
- |
RS420 |
Unspecified |
| scaffold42643 |
82692 |
83731 |
- |
PL891 |
Unspecified |
| scaffold42643 |
84125 |
84167 |
+ |
(TTTG)n |
Simple_repeat |
| scaffold42643 |
84664 |
84860 |
+ |
RS13321 |
Unspecified |
| scaffold42643 |
85136 |
85498 |
+ |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold42643 |
85140 |
85229 |
+ |
RIRE1_I-int |
LTR/Copia |
| scaffold42643 |
85225 |
85485 |
+ |
RIRE1_I-int |
LTR/Copia |
| scaffold42643 |
86690 |
87041 |
+ |
RIRE1_I-int |
LTR/Copia |
| scaffold42643 |
87285 |
88370 |
+ |
RIRE1_I-int |
LTR/Copia |
| scaffold42643 |
88367 |
88758 |
+ |
PL422 |
Unspecified |
| scaffold42643 |
88752 |
89010 |
- |
RS875 |
Unspecified |
| scaffold42643 |
88974 |
89441 |
- |
RS1154 |
Unspecified |
| scaffold42643 |
88992 |
89409 |
+ |
PL73 |
Unspecified |
| scaffold42643 |
89291 |
89539 |
+ |
RS75 |
Unspecified |
| scaffold42643 |
90631 |
90667 |
+ |
(CA)n |
Simple_repeat |
| scaffold42643 |
90737 |
90766 |
+ |
(ACA)n |
Simple_repeat |
| scaffold42643 |
90872 |
90912 |
+ |
(CA)n |
Simple_repeat |
| scaffold42643 |
90913 |
90922 |
+ |
(ATACAC)n |
Simple_repeat |
| scaffold42643 |
91457 |
91549 |
+ |
(TGA)n |
Simple_repeat |
| scaffold42643 |
91625 |
91661 |
+ |
(TACTAT)n |
Simple_repeat |
| scaffold42643 |
91748 |
91773 |
+ |
(ATT)n |
Simple_repeat |
| scaffold42643 |
91975 |
92054 |
+ |
A-rich |
Low_complexity |
| scaffold42643 |
92245 |
92280 |
+ |
(ATATAA)n |
Simple_repeat |
| scaffold42643 |
93051 |
93464 |
+ |
PL578 |
Unspecified |
| scaffold42643 |
93475 |
93500 |
+ |
(ATGAA)n |
Simple_repeat |
| scaffold42643 |
93897 |
94030 |
+ |
(AACAACA)n |
Simple_repeat |
| scaffold42643 |
94062 |
94745 |
+ |
RS1005 |
Unspecified |
| scaffold42643 |
95689 |
96345 |
- |
RS424 |
Unspecified |
| scaffold42643 |
96346 |
96405 |
+ |
(TTTAT)n |
Simple_repeat |
| scaffold42643 |
96488 |
96732 |
- |
RS4 |
Unspecified |
| scaffold42643 |
96815 |
96849 |
+ |
(A)n |
Simple_repeat |
| scaffold42643 |
99915 |
100068 |
+ |
(ACAGCA)n |
Simple_repeat |
| scaffold42643 |
100283 |
100501 |
- |
Copia-33_GM-I |
LTR |
| scaffold42643 |
101473 |
101489 |
+ |
(A)n |
Simple_repeat |
| scaffold42643 |
104108 |
104140 |
+ |
(ATTACT)n |
Simple_repeat |
| scaffold42643 |
104170 |
104221 |
+ |
(TAT)n |
Simple_repeat |
| scaffold42643 |
104464 |
104511 |
+ |
(T)n |
Simple_repeat |
| scaffold42643 |
104774 |
104820 |
+ |
(TTTATTA)n |
Simple_repeat |
| scaffold42643 |
105207 |
105394 |
+ |
RS14 |
Unspecified |
| scaffold42643 |
105485 |
106555 |
+ |
RS14 |
Unspecified |
| scaffold42643 |
106333 |
107030 |
+ |
(TTAT)n |
Simple_repeat |
| scaffold42643 |
106492 |
107030 |
+ |
(TTAT)n |
Simple_repeat |
| scaffold42643 |
106979 |
107030 |
+ |
(TTAT)n |
Simple_repeat |
| scaffold42643 |
107519 |
107561 |
+ |
(AATTA)n |
Simple_repeat |
| scaffold42643 |
107841 |
107876 |
+ |
A-rich |
Low_complexity |
| scaffold42643 |
108040 |
108124 |
- |
RS69 |
Unspecified |
| scaffold42643 |
108132 |
108410 |
- |
RS69 |
Unspecified |
| scaffold42643 |
108202 |
108446 |
- |
RS1963 |
Unspecified |
| scaffold42643 |
108479 |
108512 |
+ |
(ATTTT)n |
Simple_repeat |
| scaffold42643 |
108861 |
108891 |
+ |
(AAATAA)n |
Simple_repeat |
| scaffold42643 |
108997 |
109193 |
- |
RS273 |
Unspecified |
| scaffold42643 |
109462 |
109492 |
+ |
A-rich |
Low_complexity |
| scaffold42643 |
109684 |
109745 |
+ |
A-rich |
Low_complexity |
| scaffold42643 |
109868 |
110176 |
+ |
RS7703 |
Unspecified |
| scaffold42643 |
110001 |
110400 |
- |
PL13 |
Unspecified |
| scaffold42643 |
110428 |
110524 |
+ |
(TGA)n |
Simple_repeat |
| scaffold42643 |
110726 |
110745 |
+ |
(T)n |
Simple_repeat |
| scaffold42643 |
111056 |
111638 |
+ |
PL8 |
Unspecified |
| scaffold42643 |
111680 |
111970 |
- |
RS58 |
Unspecified |
| scaffold42643 |
112025 |
112087 |
+ |
(TTTAA)n |
Simple_repeat |
| scaffold42643 |
112459 |
112813 |
- |
PL438 |
Unspecified |
| scaffold42643 |
112831 |
112864 |
+ |
(ATTGTA)n |
Simple_repeat |
| scaffold42643 |
114910 |
115299 |
+ |
RS1010 |
Unspecified |
| scaffold42643 |
115237 |
115336 |
- |
RS1010 |
Unspecified |
| scaffold42643 |
116404 |
116428 |
+ |
(TGT)n |
Simple_repeat |
| scaffold42643 |
117516 |
117534 |
+ |
(TA)n |
Simple_repeat |
| scaffold42643 |
118257 |
118308 |
+ |
(ACTAAT)n |
Simple_repeat |
| scaffold42643 |
118387 |
118489 |
+ |
(AACCTAA)n |
Simple_repeat |
| scaffold42643 |
118453 |
118504 |
+ |
(CCACATT)n |
Simple_repeat |
| scaffold42643 |
118549 |
118606 |
+ |
A-rich |
Low_complexity |
| scaffold42643 |
122074 |
124455 |
- |
RS273 |
Unspecified |
| scaffold42643 |
125343 |
125364 |
+ |
(GCCG)n |
Simple_repeat |
| scaffold42643 |
125717 |
125878 |
- |
RS273 |
Unspecified |
| scaffold42643 |
130389 |
130561 |
+ |
RS7612 |
Unspecified |
| scaffold42643 |
130794 |
130822 |
+ |
(TCT)n |
Simple_repeat |