scaffold4392 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold4392 |
9 |
1378 |
- |
RS118 |
Unspecified |
| scaffold4392 |
438 |
1491 |
- |
RS158 |
Unspecified |
| scaffold4392 |
1572 |
1612 |
- |
RIRE1_I-int |
LTR/Copia |
| scaffold4392 |
3031 |
4627 |
- |
RIRE1_I-int |
LTR/Copia |
| scaffold4392 |
5066 |
5276 |
- |
RS13321 |
Unspecified |
| scaffold4392 |
5762 |
5848 |
+ |
PL405 |
Unspecified |
| scaffold4392 |
5855 |
6002 |
- |
Copia-13_SB-I |
LTR/Copia |
| scaffold4392 |
6441 |
6651 |
- |
RS13321 |
Unspecified |
| scaffold4392 |
7137 |
8430 |
+ |
PL405 |
Unspecified |
| scaffold4392 |
7582 |
8616 |
+ |
PL891 |
Unspecified |
| scaffold4392 |
7831 |
9748 |
+ |
RS420 |
Unspecified |
| scaffold4392 |
10033 |
11092 |
+ |
Gyp_I_MT-int |
LTR/Gypsy |
| scaffold4392 |
11210 |
11260 |
+ |
Gypsy-LTR_MT |
LTR/Gypsy |
| scaffold4392 |
11474 |
11510 |
+ |
A-rich |
Low_complexity |
| scaffold4392 |
15261 |
15307 |
+ |
A-rich |
Low_complexity |
| scaffold4392 |
15461 |
15512 |
+ |
COP14_I_MT-int |
LTR/Copia |
| scaffold4392 |
15472 |
15574 |
+ |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold4392 |
16312 |
16391 |
+ |
(TAA)n |
Simple_repeat |
| scaffold4392 |
16554 |
16590 |
+ |
(AAAAAT)n |
Simple_repeat |
| scaffold4392 |
16802 |
16854 |
+ |
(TAT)n |
Simple_repeat |
| scaffold4392 |
16874 |
17196 |
- |
RS976 |
Unspecified |
| scaffold4392 |
17573 |
17617 |
+ |
(TAGTAT)n |
Simple_repeat |
| scaffold4392 |
18066 |
18128 |
+ |
(TAATAA)n |
Simple_repeat |
| scaffold4392 |
18904 |
18941 |
+ |
(CCTCGG)n |
Simple_repeat |
| scaffold4392 |
20699 |
20728 |
- |
Gypsy-26_PTr-LTR |
LTR/Gypsy |
| scaffold4392 |
23247 |
23318 |
+ |
(TATTAA)n |
Simple_repeat |
| scaffold4392 |
23763 |
23801 |
+ |
(ATACATA)n |
Simple_repeat |
| scaffold4392 |
24090 |
24127 |
+ |
(AACTT)n |
Simple_repeat |
| scaffold4392 |
24325 |
24740 |
+ |
PL143 |
Unspecified |
| scaffold4392 |
24827 |
24891 |
+ |
A-rich |
Low_complexity |
| scaffold4392 |
24962 |
25022 |
+ |
(TTTTGT)n |
Simple_repeat |
| scaffold4392 |
25294 |
25436 |
- |
RS6457 |
Unspecified |
| scaffold4392 |
26309 |
26724 |
- |
RS1136 |
Unspecified |
| scaffold4392 |
27067 |
27749 |
- |
PL730 |
Unspecified |
| scaffold4392 |
27536 |
28053 |
- |
RS427 |
Unspecified |
| scaffold4392 |
28421 |
28444 |
+ |
(TTAG)n |
Simple_repeat |
| scaffold4392 |
28775 |
28815 |
+ |
(TTAATT)n |
Simple_repeat |
| scaffold4392 |
28871 |
28905 |
+ |
A-rich |
Low_complexity |
| scaffold4392 |
29079 |
29103 |
+ |
(AT)n |
Simple_repeat |
| scaffold4392 |
29592 |
29673 |
+ |
(TGG)n |
Simple_repeat |
| scaffold4392 |
29848 |
30021 |
+ |
RS5495 |
Unspecified |
| scaffold4392 |
30674 |
30721 |
+ |
(GTTGTC)n |
Simple_repeat |
| scaffold4392 |
31602 |
31875 |
- |
RS12199 |
Unspecified |
| scaffold4392 |
31916 |
32187 |
- |
RS12199 |
Unspecified |
| scaffold4392 |
31918 |
32051 |
- |
RS12199 |
Unspecified |
| scaffold4392 |
32088 |
32249 |
- |
RS3891 |
Unspecified |
| scaffold4392 |
32222 |
32470 |
- |
RS3891 |
Unspecified |
| scaffold4392 |
32565 |
32755 |
- |
RS3891 |
Unspecified |
| scaffold4392 |
32741 |
32989 |
- |
RS3891 |
Unspecified |
| scaffold4392 |
32833 |
33142 |
- |
RS12199 |
Unspecified |
| scaffold4392 |
33263 |
33380 |
- |
RS3891 |
Unspecified |
| scaffold4392 |
33735 |
33884 |
+ |
RS993 |
Unspecified |
| scaffold4392 |
34124 |
34171 |
+ |
GA-rich |
Low_complexity |
| scaffold4392 |
34197 |
34240 |
+ |
A-rich |
Low_complexity |
| scaffold4392 |
34447 |
34477 |
+ |
(TA)n |
Simple_repeat |
| scaffold4392 |
34776 |
35036 |
- |
RS2504 |
Unspecified |
| scaffold4392 |
37014 |
37031 |
+ |
(A)n |
Simple_repeat |
| scaffold4392 |
37081 |
37142 |
+ |
RS1220 |
Unspecified |
| scaffold4392 |
37740 |
37914 |
+ |
L1-5_STu |
LINE/L1 |
| scaffold4392 |
39155 |
39194 |
+ |
(TAA)n |
Simple_repeat |
| scaffold4392 |
39369 |
39632 |
+ |
RS356 |
Unspecified |
| scaffold4392 |
39987 |
40003 |
+ |
(A)n |
Simple_repeat |
| scaffold4392 |
40129 |
40160 |
+ |
(T)n |
Simple_repeat |
| scaffold4392 |
40269 |
40339 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold4392 |
41066 |
41643 |
- |
RS2904 |
Unspecified |
| scaffold4392 |
42303 |
42347 |
+ |
(TGA)n |
Simple_repeat |
| scaffold4392 |
43041 |
43138 |
- |
COPI2_LTR |
LTR/Copia |
| scaffold4392 |
43952 |
43957 |
+ |
(CTTTCT)n |
Simple_repeat |
| scaffold4392 |
43958 |
43994 |
+ |
(TTTC)n |
Simple_repeat |
| scaffold4392 |
45432 |
45451 |
+ |
(AAG)n |
Simple_repeat |
| scaffold4392 |
46416 |
46463 |
+ |
(ATGTT)n |
Simple_repeat |
| scaffold4392 |
46843 |
47040 |
- |
Gypsy-20_BRa-I |
LTR/Gypsy |
| scaffold4392 |
47164 |
47990 |
- |
Gypsy3-VV_I-int |
LTR/Gypsy |
| scaffold4392 |
48376 |
48515 |
- |
Gypsy3-VV_I-int |
LTR/Gypsy |
| scaffold4392 |
48573 |
49925 |
- |
Gypsy-38_Mad-I |
LTR/Gypsy |
| scaffold4392 |
52330 |
52427 |
- |
COPI2_LTR |
LTR/Copia |
| scaffold4392 |
52678 |
52733 |
+ |
RS1867 |
Unspecified |
| scaffold4392 |
53048 |
54871 |
- |
RS832 |
Unspecified |
| scaffold4392 |
54311 |
54998 |
+ |
RS323 |
Unspecified |
| scaffold4392 |
57845 |
57898 |
+ |
(TGTTTT)n |
Simple_repeat |
| scaffold4392 |
58147 |
58342 |
+ |
RS6985 |
Unspecified |
| scaffold4392 |
58304 |
58762 |
- |
RS83 |
Unspecified |
| scaffold4392 |
59102 |
59233 |
- |
RS192 |
Unspecified |
| scaffold4392 |
59165 |
59298 |
- |
RS192 |
Unspecified |
| scaffold4392 |
59358 |
59489 |
- |
RS192 |
Unspecified |
| scaffold4392 |
59424 |
59553 |
- |
RS192 |
Unspecified |
| scaffold4392 |
59487 |
59614 |
- |
RS192 |
Unspecified |
| scaffold4392 |
59549 |
59733 |
- |
RS192 |
Unspecified |
| scaffold4392 |
59733 |
60354 |
- |
PL219 |
Unspecified |
| scaffold4392 |
59759 |
60483 |
- |
RS530 |
Unspecified |
| scaffold4392 |
60369 |
61010 |
- |
RS1210 |
Unspecified |
| scaffold4392 |
61011 |
61211 |
- |
RS192 |
Unspecified |
| scaffold4392 |
61212 |
61280 |
- |
PL704 |
Unspecified |
| scaffold4392 |
61286 |
62017 |
- |
PL780 |
Unspecified |
| scaffold4392 |
62849 |
63483 |
- |
RS2758 |
Unspecified |
| scaffold4392 |
63479 |
63693 |
+ |
RS1563 |
Unspecified |
| scaffold4392 |
63673 |
63853 |
+ |
RS3875 |
Unspecified |