scaffold5419 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold5419 |
372 |
431 |
+ |
(CTC)n |
Simple_repeat |
| scaffold5419 |
859 |
876 |
+ |
(T)n |
Simple_repeat |
| scaffold5419 |
2496 |
2619 |
+ |
RS613 |
Unspecified |
| scaffold5419 |
2573 |
2630 |
+ |
RS14955 |
Unspecified |
| scaffold5419 |
3129 |
3170 |
+ |
(AAAAACA)n |
Simple_repeat |
| scaffold5419 |
3549 |
3572 |
+ |
(A)n |
Simple_repeat |
| scaffold5419 |
3794 |
3825 |
+ |
(A)n |
Simple_repeat |
| scaffold5419 |
3871 |
4021 |
+ |
RS1180 |
Unspecified |
| scaffold5419 |
4017 |
4160 |
- |
RS115 |
Unspecified |
| scaffold5419 |
4094 |
4171 |
+ |
RS16201 |
Unspecified |
| scaffold5419 |
4162 |
4289 |
+ |
RS1180 |
Unspecified |
| scaffold5419 |
4687 |
4736 |
+ |
A-rich |
Low_complexity |
| scaffold5419 |
4783 |
4835 |
+ |
A-rich |
Low_complexity |
| scaffold5419 |
5246 |
5473 |
+ |
RS2034 |
Unspecified |
| scaffold5419 |
6412 |
6441 |
+ |
(A)n |
Simple_repeat |
| scaffold5419 |
7051 |
7110 |
- |
RS2157 |
Unspecified |
| scaffold5419 |
7191 |
7413 |
+ |
RS4 |
Unspecified |
| scaffold5419 |
7487 |
7580 |
+ |
RS4475 |
Unspecified |
| scaffold5419 |
8257 |
8317 |
+ |
(TTTGAT)n |
Simple_repeat |
| scaffold5419 |
8619 |
8818 |
- |
RS7194 |
Unspecified |
| scaffold5419 |
9192 |
9325 |
- |
RS4871 |
Unspecified |
| scaffold5419 |
10205 |
10260 |
+ |
(TGAGT)n |
Simple_repeat |
| scaffold5419 |
13188 |
13698 |
+ |
RS1729 |
Unspecified |
| scaffold5419 |
13972 |
14086 |
+ |
RS10476 |
Unspecified |
| scaffold5419 |
14764 |
14902 |
+ |
RS376 |
Unspecified |
| scaffold5419 |
16576 |
16609 |
+ |
(AATT)n |
Simple_repeat |
| scaffold5419 |
16914 |
16948 |
+ |
(GATGTT)n |
Simple_repeat |
| scaffold5419 |
17612 |
17633 |
+ |
(T)n |
Simple_repeat |
| scaffold5419 |
19355 |
19388 |
+ |
(ATT)n |
Simple_repeat |
| scaffold5419 |
19483 |
19620 |
- |
RS18405 |
Unspecified |
| scaffold5419 |
19503 |
19669 |
- |
RS549 |
Unspecified |
| scaffold5419 |
19924 |
19981 |
+ |
(TTA)n |
Simple_repeat |
| scaffold5419 |
20239 |
20467 |
+ |
RS727 |
Unspecified |
| scaffold5419 |
20387 |
20498 |
- |
RS18111 |
Unspecified |
| scaffold5419 |
20819 |
20948 |
- |
RS1221 |
Unspecified |
| scaffold5419 |
21553 |
21606 |
+ |
(TTTAAT)n |
Simple_repeat |
| scaffold5419 |
21737 |
21753 |
+ |
(A)n |
Simple_repeat |
| scaffold5419 |
22661 |
22801 |
- |
RS1221 |
Unspecified |
| scaffold5419 |
23027 |
23209 |
- |
RS1221 |
Unspecified |
| scaffold5419 |
23283 |
23476 |
- |
RS4882 |
Unspecified |
| scaffold5419 |
23639 |
23683 |
+ |
A-rich |
Low_complexity |
| scaffold5419 |
23726 |
23881 |
- |
RS1221 |
Unspecified |
| scaffold5419 |
23939 |
24138 |
- |
RS2452 |
Unspecified |
| scaffold5419 |
24290 |
24408 |
+ |
RS2452 |
Unspecified |
| scaffold5419 |
24434 |
24619 |
- |
RS4882 |
Unspecified |
| scaffold5419 |
24783 |
24827 |
+ |
A-rich |
Low_complexity |
| scaffold5419 |
24886 |
25067 |
+ |
RS581 |
Unspecified |
| scaffold5419 |
25358 |
25627 |
- |
RS1 |
Unspecified |
| scaffold5419 |
25533 |
25645 |
+ |
RS16358 |
Unspecified |
| scaffold5419 |
25698 |
25943 |
- |
RS4 |
Unspecified |
| scaffold5419 |
27070 |
27143 |
+ |
RETROSAT5_I-int |
LTR/Gypsy |
| scaffold5419 |
27866 |
28118 |
- |
RS237 |
Unspecified |
| scaffold5419 |
28485 |
28515 |
+ |
A-rich |
Low_complexity |
| scaffold5419 |
28485 |
28562 |
+ |
A-rich |
Low_complexity |
| scaffold5419 |
28502 |
28562 |
+ |
RS5034 |
Unspecified |
| scaffold5419 |
28810 |
28889 |
- |
PL602 |
Unspecified |
| scaffold5419 |
28921 |
29176 |
- |
RS237 |
Unspecified |
| scaffold5419 |
29568 |
29628 |
+ |
RS5034 |
Unspecified |
| scaffold5419 |
30032 |
30600 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold5419 |
31872 |
31906 |
+ |
ATLINE1_8 |
LINE/L1 |
| scaffold5419 |
32419 |
32435 |
+ |
(T)n |
Simple_repeat |
| scaffold5419 |
32989 |
33246 |
- |
RS3406 |
Unspecified |
| scaffold5419 |
33279 |
33351 |
+ |
(TC)n |
Simple_repeat |
| scaffold5419 |
33848 |
34058 |
- |
Mariner-4_SBi |
DNA/TcMar-Stowaway |
| scaffold5419 |
34653 |
35126 |
- |
RS2226 |
Unspecified |
| scaffold5419 |
35117 |
35327 |
- |
Mariner-4_SBi |
DNA/TcMar-Stowaway |
| scaffold5419 |
35894 |
36077 |
- |
RS8048 |
Unspecified |
| scaffold5419 |
38108 |
38164 |
+ |
(TTTATG)n |
Simple_repeat |
| scaffold5419 |
38741 |
38783 |
+ |
(ATA)n |
Simple_repeat |
| scaffold5419 |
39915 |
39968 |
- |
RS1240 |
Unspecified |
| scaffold5419 |
39921 |
39968 |
- |
RS631 |
Unspecified |
| scaffold5419 |
39932 |
40123 |
- |
RS631 |
Unspecified |
| scaffold5419 |
40126 |
40226 |
+ |
RS18024 |
Unspecified |
| scaffold5419 |
42802 |
42864 |
+ |
Copia-3_PTri-I |
LTR/Copia |
| scaffold5419 |
43833 |
43877 |
+ |
(T)n |
Simple_repeat |
| scaffold5419 |
44010 |
44040 |
+ |
(TTTAA)n |
Simple_repeat |
| scaffold5419 |
44052 |
44223 |
- |
RS17860 |
Unspecified |
| scaffold5419 |
44744 |
44769 |
+ |
(GGCAC)n |
Simple_repeat |
| scaffold5419 |
44989 |
45154 |
+ |
PL505 |
Unspecified |
| scaffold5419 |
45009 |
45209 |
+ |
RS1701 |
Unspecified |
| scaffold5419 |
45212 |
45982 |
+ |
PL378 |
Unspecified |
| scaffold5419 |
45981 |
46856 |
+ |
A-rich |
Low_complexity |
| scaffold5419 |
46811 |
46856 |
+ |
A-rich |
Low_complexity |
| scaffold5419 |
46910 |
47072 |
+ |
PL363 |
Unspecified |
| scaffold5419 |
47086 |
47330 |
+ |
PL363 |
Unspecified |
| scaffold5419 |
47974 |
48245 |
- |
RS1 |
Unspecified |
| scaffold5419 |
49183 |
49237 |
- |
RS29 |
Unspecified |
| scaffold5419 |
49194 |
49262 |
+ |
RS873 |
Unspecified |
| scaffold5419 |
49207 |
49518 |
- |
RS873 |
Unspecified |
| scaffold5419 |
50626 |
51826 |
+ |
Copia-93_VV-I |
LTR/Copia |
| scaffold5419 |
52263 |
53906 |
+ |
Copia-93_VV-I |
LTR/Copia |
| scaffold5419 |
56238 |
57254 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold5419 |
56262 |
56879 |
- |
L1-5_STu |
LINE/L1 |
| scaffold5419 |
58311 |
58974 |
+ |
PL646 |
Unspecified |
| scaffold5419 |
59437 |
59638 |
- |
RS4 |
Unspecified |
| scaffold5419 |
61440 |
61464 |
+ |
(AT)n |
Simple_repeat |
| scaffold5419 |
61852 |
62234 |
- |
PL884 |
Unspecified |
| scaffold5419 |
62326 |
62377 |
+ |
(ATATA)n |
Simple_repeat |
| scaffold5419 |
62373 |
62642 |
- |
RS1 |
Unspecified |
| scaffold5419 |
62675 |
62741 |
+ |
(AAAT)n |
Simple_repeat |
| scaffold5419 |
62751 |
63242 |
+ |
(T)n |
Simple_repeat |
| scaffold5419 |
63213 |
63242 |
+ |
(T)n |
Simple_repeat |
| scaffold5419 |
63403 |
63436 |
+ |
(TAAGT)n |
Simple_repeat |
| scaffold5419 |
63524 |
63695 |
+ |
RS2663 |
Unspecified |
| scaffold5419 |
63751 |
63832 |
+ |
PL296 |
Unspecified |
| scaffold5419 |
64297 |
64525 |
- |
RS16888 |
Unspecified |
| scaffold5419 |
64644 |
64907 |
- |
RS1364 |
Unspecified |
| scaffold5419 |
65013 |
65300 |
+ |
RS9173 |
Unspecified |
| scaffold5419 |
65558 |
65615 |
- |
RS9173 |
Unspecified |
| scaffold5419 |
65725 |
65776 |
+ |
RS1364 |
Unspecified |
| scaffold5419 |
65837 |
66098 |
+ |
RS1364 |
Unspecified |
| scaffold5419 |
66195 |
66212 |
+ |
(T)n |
Simple_repeat |
| scaffold5419 |
70679 |
70709 |
+ |
(T)n |
Simple_repeat |
| scaffold5419 |
71049 |
71093 |
+ |
A-rich |
Low_complexity |
| scaffold5419 |
74233 |
74307 |
+ |
(AT)n |
Simple_repeat |
| scaffold5419 |
75140 |
75157 |
+ |
(T)n |
Simple_repeat |
| scaffold5419 |
75429 |
75458 |
+ |
(A)n |
Simple_repeat |
| scaffold5419 |
75612 |
75710 |
+ |
RS237 |
Unspecified |
| scaffold5419 |
75708 |
76145 |
+ |
PL265 |
Unspecified |
| scaffold5419 |
76145 |
76600 |
- |
PL582 |
Unspecified |
| scaffold5419 |
76545 |
76613 |
- |
PL582 |
Unspecified |
| scaffold5419 |
76789 |
76884 |
+ |
RS750 |
Unspecified |
| scaffold5419 |
77129 |
77823 |
- |
RS27 |
Unspecified |
| scaffold5419 |
77718 |
77838 |
- |
RS8652 |
Unspecified |
| scaffold5419 |
79905 |
80025 |
- |
RS23 |
Unspecified |
| scaffold5419 |
80229 |
80270 |
+ |
A-rich |
Low_complexity |
| scaffold5419 |
80482 |
80556 |
+ |
(TTATT)n |
Simple_repeat |
| scaffold5419 |
80526 |
80557 |
+ |
(T)n |
Simple_repeat |
| scaffold5419 |
81210 |
81927 |
- |
PL299 |
Unspecified |
| scaffold5419 |
81979 |
82029 |
+ |
(TTTAAT)n |
Simple_repeat |
| scaffold5419 |
82419 |
82738 |
+ |
RS4686 |
Unspecified |