scaffold5559 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold5559 |
1 |
96 |
+ |
RS472 |
Unspecified |
| scaffold5559 |
119 |
363 |
+ |
ATCopia34_LTR |
LTR/Copia |
| scaffold5559 |
646 |
1247 |
- |
PL308 |
Unspecified |
| scaffold5559 |
1394 |
1450 |
+ |
(TATA)n |
Simple_repeat |
| scaffold5559 |
2627 |
2761 |
+ |
RS13868 |
Unspecified |
| scaffold5559 |
2770 |
2946 |
+ |
RS384 |
Unspecified |
| scaffold5559 |
6096 |
6123 |
+ |
(AC)n |
Simple_repeat |
| scaffold5559 |
9676 |
9692 |
+ |
(AG)n |
Simple_repeat |
| scaffold5559 |
10128 |
10166 |
+ |
(TTTTG)n |
Simple_repeat |
| scaffold5559 |
11051 |
11092 |
+ |
(TCAA)n |
Simple_repeat |
| scaffold5559 |
12081 |
12331 |
- |
RS16888 |
Unspecified |
| scaffold5559 |
12515 |
12549 |
+ |
G-rich |
Low_complexity |
| scaffold5559 |
12615 |
12665 |
+ |
(TAAT)n |
Simple_repeat |
| scaffold5559 |
13220 |
13241 |
+ |
(T)n |
Simple_repeat |
| scaffold5559 |
13492 |
13553 |
+ |
(TCA)n |
Simple_repeat |
| scaffold5559 |
13558 |
13673 |
+ |
(ATA)n |
Simple_repeat |
| scaffold5559 |
14253 |
14275 |
+ |
(GCT)n |
Simple_repeat |
| scaffold5559 |
16563 |
16585 |
+ |
(TATT)n |
Simple_repeat |
| scaffold5559 |
16772 |
16790 |
+ |
(T)n |
Simple_repeat |
| scaffold5559 |
20131 |
20224 |
+ |
PL6 |
Unspecified |
| scaffold5559 |
20868 |
20981 |
- |
RS6506 |
Unspecified |
| scaffold5559 |
21044 |
21151 |
- |
RS285 |
Unspecified |
| scaffold5559 |
21189 |
21228 |
+ |
(T)n |
Simple_repeat |
| scaffold5559 |
22717 |
22740 |
+ |
(A)n |
Simple_repeat |
| scaffold5559 |
23068 |
23319 |
+ |
RS14780 |
Unspecified |
| scaffold5559 |
23608 |
23661 |
- |
RS41 |
Unspecified |
| scaffold5559 |
24302 |
24337 |
+ |
(TTATTT)n |
Simple_repeat |
| scaffold5559 |
25384 |
25408 |
+ |
(A)n |
Simple_repeat |
| scaffold5559 |
25609 |
25881 |
- |
RS17600 |
Unspecified |
| scaffold5559 |
25907 |
25955 |
+ |
A-rich |
Low_complexity |
| scaffold5559 |
26225 |
26262 |
+ |
A-rich |
Low_complexity |
| scaffold5559 |
26477 |
26528 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold5559 |
26784 |
27302 |
+ |
PL592 |
Unspecified |
| scaffold5559 |
27303 |
27319 |
+ |
(A)n |
Simple_repeat |
| scaffold5559 |
27740 |
27785 |
+ |
A-rich |
Low_complexity |
| scaffold5559 |
28201 |
28253 |
+ |
A-rich |
Low_complexity |
| scaffold5559 |
28838 |
28886 |
+ |
(TAT)n |
Simple_repeat |
| scaffold5559 |
29527 |
29551 |
+ |
(T)n |
Simple_repeat |
| scaffold5559 |
30961 |
30974 |
+ |
(TTTATA)n |
Simple_repeat |
| scaffold5559 |
30975 |
31002 |
+ |
(TA)n |
Simple_repeat |
| scaffold5559 |
31015 |
31174 |
- |
hAT-1N_PTr |
DNA/hAT-Ac |
| scaffold5559 |
34939 |
35047 |
- |
RS4475 |
Unspecified |
| scaffold5559 |
34955 |
35047 |
+ |
RS12449 |
Unspecified |
| scaffold5559 |
35081 |
35159 |
+ |
A-rich |
Low_complexity |
| scaffold5559 |
35867 |
35896 |
+ |
(AAT)n |
Simple_repeat |
| scaffold5559 |
36005 |
36035 |
+ |
(GATGAG)n |
Simple_repeat |
| scaffold5559 |
36336 |
36533 |
+ |
RS17860 |
Unspecified |
| scaffold5559 |
36666 |
36691 |
+ |
(T)n |
Simple_repeat |
| scaffold5559 |
36816 |
37085 |
- |
RS10 |
Unspecified |
| scaffold5559 |
37254 |
37345 |
- |
RS18316 |
Unspecified |
| scaffold5559 |
38490 |
38532 |
+ |
A-rich |
Low_complexity |
| scaffold5559 |
39083 |
39366 |
+ |
MtPH-A5-Ia |
DNA/PIF-Harbinger |
| scaffold5559 |
39444 |
39684 |
+ |
MtPH-A5-Ia |
DNA/PIF-Harbinger |
| scaffold5559 |
40385 |
40789 |
- |
RS1141 |
Unspecified |
| scaffold5559 |
40884 |
41261 |
- |
RS8 |
Unspecified |
| scaffold5559 |
42981 |
43173 |
+ |
RS163 |
Unspecified |
| scaffold5559 |
43543 |
43661 |
- |
RS2439 |
Unspecified |
| scaffold5559 |
43622 |
43677 |
+ |
PL699 |
Unspecified |
| scaffold5559 |
43707 |
44303 |
- |
RS2160 |
Unspecified |
| scaffold5559 |
45086 |
45139 |
+ |
G-rich |
Low_complexity |
| scaffold5559 |
45278 |
45295 |
+ |
(T)n |
Simple_repeat |
| scaffold5559 |
45594 |
45696 |
- |
RS427 |
Unspecified |
| scaffold5559 |
50328 |
50335 |
+ |
(TATTCAT)n |
Simple_repeat |
| scaffold5559 |
50336 |
50362 |
+ |
(TTTA)n |
Simple_repeat |
| scaffold5559 |
50363 |
50378 |
+ |
(TATTCAT)n |
Simple_repeat |
| scaffold5559 |
50647 |
51193 |
- |
PL807 |
Unspecified |
| scaffold5559 |
51940 |
51987 |
+ |
(TAG)n |
Simple_repeat |
| scaffold5559 |
52063 |
52153 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold5559 |
52461 |
52501 |
+ |
(AGTTTTA)n |
Simple_repeat |
| scaffold5559 |
55550 |
55620 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold5559 |
56439 |
56490 |
- |
Copia-3_PTri-I |
LTR/Copia |
| scaffold5559 |
56629 |
56661 |
+ |
A-rich |
Low_complexity |
| scaffold5559 |
56927 |
56955 |
+ |
(AT)n |
Simple_repeat |
| scaffold5559 |
58850 |
58900 |
+ |
(ATA)n |
Simple_repeat |
| scaffold5559 |
59016 |
59083 |
- |
RS3465 |
Unspecified |
| scaffold5559 |
59094 |
59133 |
+ |
(T)n |
Simple_repeat |
| scaffold5559 |
60206 |
60245 |
+ |
(T)n |
Simple_repeat |
| scaffold5559 |
60366 |
60427 |
+ |
(AAC)n |
Simple_repeat |
| scaffold5559 |
60428 |
60456 |
+ |
(TAA)n |
Simple_repeat |
| scaffold5559 |
61307 |
61374 |
- |
RS3465 |
Unspecified |
| scaffold5559 |
61385 |
61424 |
+ |
(T)n |
Simple_repeat |
| scaffold5559 |
62495 |
62533 |
+ |
(T)n |
Simple_repeat |
| scaffold5559 |
62772 |
62850 |
- |
RS73 |
Unspecified |
| scaffold5559 |
62850 |
62952 |
- |
RS3788 |
Unspecified |
| scaffold5559 |
62864 |
63060 |
- |
RS73 |
Unspecified |
| scaffold5559 |
63264 |
63286 |
+ |
(T)n |
Simple_repeat |
| scaffold5559 |
63295 |
63467 |
+ |
RS8136 |
Unspecified |
| scaffold5559 |
64383 |
64417 |
+ |
(ATTTC)n |
Simple_repeat |
| scaffold5559 |
65023 |
65067 |
+ |
(A)n |
Simple_repeat |
| scaffold5559 |
65816 |
65876 |
+ |
Helitron-4N1_SMo |
RC/Helitron |
| scaffold5559 |
65844 |
65880 |
+ |
EnSpm6_SB |
DNA/CMC-EnSpm |
| scaffold5559 |
65845 |
65915 |
- |
Gypsy-120_SB-I |
LTR/Gypsy |
| scaffold5559 |
66921 |
67068 |
+ |
RS4968 |
Unspecified |
| scaffold5559 |
68623 |
68683 |
+ |
Helitron-4N1_SMo |
RC/Helitron |
| scaffold5559 |
68651 |
68687 |
+ |
EnSpm6_SB |
DNA/CMC-EnSpm |
| scaffold5559 |
68652 |
68722 |
- |
Gypsy-120_SB-I |
LTR/Gypsy |
| scaffold5559 |
69722 |
69869 |
+ |
RS4968 |
Unspecified |
| scaffold5559 |
70956 |
70993 |
+ |
(TAT)n |
Simple_repeat |
| scaffold5559 |
71158 |
71199 |
+ |
STOWAWAY2_ZM |
DNA/TcMar-Stowaway |
| scaffold5559 |
71261 |
71453 |
- |
LTR2-ZM_LTR |
LTR |
| scaffold5559 |
71867 |
71932 |
+ |
(A)n |
Simple_repeat |
| scaffold5559 |
73358 |
73554 |
- |
RS1900 |
Unspecified |
| scaffold5559 |
73838 |
74364 |
- |
RS827 |
Unspecified |
| scaffold5559 |
78553 |
78587 |
+ |
(T)n |
Simple_repeat |
| scaffold5559 |
79155 |
79172 |
+ |
(A)n |
Simple_repeat |
| scaffold5559 |
79185 |
79224 |
+ |
(TTTTAT)n |
Simple_repeat |
| scaffold5559 |
79707 |
79786 |
+ |
(AAC)n |
Simple_repeat |
| scaffold5559 |
80866 |
80887 |
+ |
(A)n |
Simple_repeat |
| scaffold5559 |
81089 |
81146 |
+ |
(ATAATTT)n |
Simple_repeat |
| scaffold5559 |
81293 |
81405 |
- |
RS5596 |
Unspecified |
| scaffold5559 |
82414 |
82775 |
+ |
RS827 |
Unspecified |
| scaffold5559 |
83475 |
83540 |
+ |
(AAT)n |
Simple_repeat |
| scaffold5559 |
83684 |
83754 |
+ |
(TAA)n |
Simple_repeat |
| scaffold5559 |
84849 |
84940 |
- |
Ogre-MT3_I-int |
LTR/Gypsy |
| scaffold5559 |
84937 |
85081 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold5559 |
85403 |
85426 |
+ |
(T)n |
Simple_repeat |
| scaffold5559 |
85516 |
85611 |
- |
PIGY-I_PS |
LTR/Gypsy |
| scaffold5559 |
85566 |
85621 |
- |
Alfare1_I-int |
LTR/Copia? |
| scaffold5559 |
86104 |
86140 |
+ |
(ATC)n |
Simple_repeat |