scaffold5717 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold5717 |
151 |
594 |
+ |
RS227 |
Unspecified |
| scaffold5717 |
911 |
949 |
+ |
(TTGTAT)n |
Simple_repeat |
| scaffold5717 |
1377 |
1635 |
+ |
RS122 |
Unspecified |
| scaffold5717 |
2105 |
2143 |
+ |
(TTGTAT)n |
Simple_repeat |
| scaffold5717 |
2571 |
3150 |
+ |
RS122 |
Unspecified |
| scaffold5717 |
3650 |
4065 |
+ |
PL910 |
Unspecified |
| scaffold5717 |
5612 |
6225 |
- |
Gypsy-I_MT |
LTR/Gypsy |
| scaffold5717 |
6657 |
6971 |
- |
Gypsy-I_MT |
LTR/Gypsy |
| scaffold5717 |
6964 |
7079 |
+ |
RS5591 |
Unspecified |
| scaffold5717 |
7122 |
8650 |
- |
Gypsy-53_GM-I |
LTR/Gypsy |
| scaffold5717 |
9586 |
9700 |
- |
Atlantys1_I-int |
LTR/Gypsy |
| scaffold5717 |
10487 |
10506 |
+ |
(TCT)n |
Simple_repeat |
| scaffold5717 |
10528 |
10803 |
+ |
RS8781 |
Unspecified |
| scaffold5717 |
11352 |
12828 |
- |
RS3148 |
Unspecified |
| scaffold5717 |
13050 |
13101 |
+ |
A-rich |
Low_complexity |
| scaffold5717 |
13343 |
13381 |
+ |
Copia-66_VV-I |
LTR/Copia |
| scaffold5717 |
15340 |
15623 |
- |
LTR2-ZM_LTR |
LTR |
| scaffold5717 |
15730 |
15769 |
+ |
(AATCTTA)n |
Simple_repeat |
| scaffold5717 |
16549 |
16585 |
+ |
(ATA)n |
Simple_repeat |
| scaffold5717 |
17001 |
17060 |
+ |
(TTTGTT)n |
Simple_repeat |
| scaffold5717 |
17117 |
17189 |
+ |
A-rich |
Low_complexity |
| scaffold5717 |
17207 |
17262 |
+ |
A-rich |
Low_complexity |
| scaffold5717 |
17612 |
17745 |
- |
LTR2-ZM_LTR |
LTR |
| scaffold5717 |
18280 |
18414 |
- |
Gypsy-72-LTR_ZM |
LTR/Gypsy |
| scaffold5717 |
18631 |
18701 |
+ |
A-rich |
Low_complexity |
| scaffold5717 |
18801 |
18940 |
+ |
(ACCAGC)n |
Simple_repeat |
| scaffold5717 |
18931 |
20819 |
- |
RS658 |
Unspecified |
| scaffold5717 |
20822 |
21129 |
- |
RS266 |
Unspecified |
| scaffold5717 |
21142 |
21725 |
+ |
RS514 |
Unspecified |
| scaffold5717 |
22128 |
22217 |
- |
RETROSAT5_I-int |
LTR/Gypsy |
| scaffold5717 |
22227 |
22729 |
+ |
RS30 |
Unspecified |
| scaffold5717 |
22931 |
22963 |
+ |
A-rich |
Low_complexity |
| scaffold5717 |
23425 |
23517 |
+ |
(TATG)n |
Simple_repeat |
| scaffold5717 |
23879 |
23915 |
+ |
(TA)n |
Simple_repeat |
| scaffold5717 |
24794 |
24851 |
+ |
(ATGTTGG)n |
Simple_repeat |
| scaffold5717 |
24932 |
24952 |
+ |
(A)n |
Simple_repeat |
| scaffold5717 |
26413 |
27397 |
- |
RS13496 |
Unspecified |
| scaffold5717 |
27986 |
28079 |
+ |
A-rich |
Low_complexity |
| scaffold5717 |
28251 |
28305 |
+ |
(ACTATTC)n |
Simple_repeat |
| scaffold5717 |
28894 |
28978 |
+ |
A-rich |
Low_complexity |
| scaffold5717 |
29146 |
29197 |
+ |
(AATTTAT)n |
Simple_repeat |
| scaffold5717 |
29942 |
29980 |
+ |
A-rich |
Low_complexity |
| scaffold5717 |
30014 |
30272 |
- |
RS1963 |
Unspecified |
| scaffold5717 |
30074 |
30380 |
- |
RS266 |
Unspecified |
| scaffold5717 |
30972 |
30990 |
+ |
(A)n |
Simple_repeat |
| scaffold5717 |
32182 |
32240 |
+ |
A-rich |
Low_complexity |
| scaffold5717 |
32265 |
32314 |
+ |
(TA)n |
Simple_repeat |
| scaffold5717 |
33221 |
33258 |
+ |
(TGATTTT)n |
Simple_repeat |
| scaffold5717 |
33377 |
33432 |
+ |
(ATT)n |
Simple_repeat |
| scaffold5717 |
35112 |
35384 |
+ |
RS586 |
Unspecified |
| scaffold5717 |
36888 |
36939 |
+ |
(TGTTCGC)n |
Simple_repeat |
| scaffold5717 |
37340 |
37599 |
- |
RS10103 |
Unspecified |
| scaffold5717 |
37476 |
37931 |
- |
RS7298 |
Unspecified |
| scaffold5717 |
38180 |
38297 |
- |
RS19 |
Unspecified |
| scaffold5717 |
38180 |
38311 |
- |
RS426 |
Unspecified |
| scaffold5717 |
38461 |
38723 |
- |
RS4804 |
Unspecified |
| scaffold5717 |
39468 |
39608 |
- |
RS10357 |
Unspecified |
| scaffold5717 |
41437 |
41453 |
+ |
(A)n |
Simple_repeat |
| scaffold5717 |
41565 |
41711 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold5717 |
41870 |
42042 |
+ |
(CCCGA)n |
Simple_repeat |
| scaffold5717 |
42073 |
42217 |
+ |
RS2719 |
Unspecified |
| scaffold5717 |
44171 |
44303 |
+ |
(TAT)n |
Simple_repeat |
| scaffold5717 |
45295 |
45570 |
- |
L1-15_GM |
LINE/L1 |
| scaffold5717 |
45788 |
45835 |
+ |
(TA)n |
Simple_repeat |
| scaffold5717 |
46247 |
46272 |
+ |
(T)n |
Simple_repeat |
| scaffold5717 |
46669 |
46736 |
+ |
(AATTG)n |
Simple_repeat |
| scaffold5717 |
47478 |
47643 |
+ |
RS3047 |
Unspecified |
| scaffold5717 |
47652 |
48230 |
- |
PL563 |
Unspecified |
| scaffold5717 |
48426 |
48455 |
+ |
G-rich |
Low_complexity |
| scaffold5717 |
49382 |
49426 |
+ |
GA-rich |
Low_complexity |
| scaffold5717 |
49469 |
49544 |
- |
HAT-11_Mad |
DNA/hAT-Tip100 |
| scaffold5717 |
51285 |
51349 |
- |
RS275 |
Unspecified |
| scaffold5717 |
51399 |
51429 |
+ |
(ATT)n |
Simple_repeat |
| scaffold5717 |
51517 |
51653 |
+ |
RS275 |
Unspecified |
| scaffold5717 |
51670 |
51706 |
+ |
(ATTCTAA)n |
Simple_repeat |
| scaffold5717 |
52410 |
52597 |
- |
RS1512 |
Unspecified |
| scaffold5717 |
52598 |
52761 |
- |
META1_I-int |
LTR/Copia |
| scaffold5717 |
52970 |
53063 |
- |
Copia-85_ST-I |
LTR/Copia |
| scaffold5717 |
53820 |
53872 |
+ |
(ATCATT)n |
Simple_repeat |
| scaffold5717 |
54593 |
54646 |
+ |
(TATTCAA)n |
Simple_repeat |
| scaffold5717 |
57042 |
57243 |
- |
RS1512 |
Unspecified |
| scaffold5717 |
57956 |
58168 |
+ |
PL501 |
Unspecified |
| scaffold5717 |
58416 |
58473 |
+ |
(AATTA)n |
Simple_repeat |
| scaffold5717 |
58494 |
58761 |
+ |
RS1 |
Unspecified |
| scaffold5717 |
59117 |
59669 |
+ |
PL301 |
Unspecified |
| scaffold5717 |
59998 |
60038 |
+ |
A-rich |
Low_complexity |
| scaffold5717 |
59998 |
60141 |
+ |
A-rich |
Low_complexity |
| scaffold5717 |
60019 |
60141 |
+ |
RS418 |
Unspecified |
| scaffold5717 |
60143 |
60527 |
- |
RS29 |
Unspecified |
| scaffold5717 |
60607 |
60659 |
+ |
(ATTAA)n |
Simple_repeat |
| scaffold5717 |
60823 |
60989 |
- |
RS776 |
Unspecified |
| scaffold5717 |
61310 |
61370 |
+ |
GA-rich |
Low_complexity |
| scaffold5717 |
61965 |
62011 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold5717 |
63806 |
63944 |
+ |
RS4936 |
Unspecified |
| scaffold5717 |
64077 |
64259 |
+ |
RS6175 |
Unspecified |
| scaffold5717 |
64208 |
64387 |
- |
RS14637 |
Unspecified |
| scaffold5717 |
64308 |
64604 |
- |
RS14637 |
Unspecified |
| scaffold5717 |
64797 |
64828 |
+ |
A-rich |
Low_complexity |
| scaffold5717 |
65040 |
65159 |
+ |
RS18264 |
Unspecified |
| scaffold5717 |
65468 |
65576 |
+ |
RS7374 |
Unspecified |
| scaffold5717 |
65480 |
65576 |
+ |
RS2496 |
Unspecified |
| scaffold5717 |
65774 |
65960 |
- |
RS586 |
Unspecified |
| scaffold5717 |
66446 |
67207 |
+ |
RS214 |
Unspecified |
| scaffold5717 |
67241 |
67279 |
+ |
(A)n |
Simple_repeat |
| scaffold5717 |
67366 |
67687 |
+ |
RS831 |
Unspecified |
| scaffold5717 |
67699 |
67753 |
+ |
(TATTAAC)n |
Simple_repeat |
| scaffold5717 |
67794 |
68035 |
+ |
RS445 |
Unspecified |
| scaffold5717 |
72206 |
72386 |
+ |
RS1436 |
Unspecified |
| scaffold5717 |
72383 |
72524 |
- |
RS1362 |
Unspecified |
| scaffold5717 |
72520 |
72619 |
+ |
(AACAAT)n |
Simple_repeat |
| scaffold5717 |
74255 |
74558 |
- |
RS831 |
Unspecified |
| scaffold5717 |
74353 |
75143 |
- |
RS214 |
Unspecified |
| scaffold5717 |
75455 |
75491 |
+ |
(AATA)n |
Simple_repeat |
| scaffold5717 |
76518 |
76557 |
+ |
(TTTTTAG)n |
Simple_repeat |
| scaffold5717 |
76586 |
76869 |
+ |
(CAGTT)n |
Simple_repeat |
| scaffold5717 |
77401 |
77599 |
+ |
L1-4_VC |
LINE/L1 |
| scaffold5717 |
77841 |
77960 |
+ |
RS13969 |
Unspecified |