scaffold7580 Repeat List
| genome |
start |
end |
strand |
repeat-name |
repeat-class |
| scaffold7580 |
1 |
48 |
+ |
PL475 |
Unspecified |
| scaffold7580 |
45 |
236 |
- |
hAT-17N1_ZM |
DNA/hAT-Ac |
| scaffold7580 |
138 |
236 |
- |
hAT-17N1_ZM |
DNA/hAT-Ac |
| scaffold7580 |
246 |
272 |
+ |
A-rich |
Low_complexity |
| scaffold7580 |
803 |
954 |
- |
hAT-17N1_ZM |
DNA/hAT-Ac |
| scaffold7580 |
971 |
1047 |
+ |
PL475 |
Unspecified |
| scaffold7580 |
1805 |
1843 |
+ |
(AATAATC)n |
Simple_repeat |
| scaffold7580 |
2602 |
2722 |
- |
RS260 |
Unspecified |
| scaffold7580 |
3064 |
3169 |
- |
RS260 |
Unspecified |
| scaffold7580 |
5106 |
5119 |
+ |
(ATGTGA)n |
Simple_repeat |
| scaffold7580 |
5120 |
5157 |
+ |
(ATTGA)n |
Simple_repeat |
| scaffold7580 |
5158 |
5167 |
+ |
(ATGTGA)n |
Simple_repeat |
| scaffold7580 |
5401 |
6435 |
+ |
RS51 |
Unspecified |
| scaffold7580 |
8707 |
9260 |
- |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold7580 |
10306 |
10343 |
+ |
(ACAAAG)n |
Simple_repeat |
| scaffold7580 |
11851 |
11912 |
+ |
Gypsy-10_Pru-LTR |
LTR/Gypsy |
| scaffold7580 |
12568 |
12902 |
- |
RS1563 |
Unspecified |
| scaffold7580 |
13562 |
13591 |
- |
LINE1-43_SBi |
LINE/L1 |
| scaffold7580 |
13875 |
14000 |
+ |
PL530 |
Unspecified |
| scaffold7580 |
14274 |
14839 |
- |
RS430 |
Unspecified |
| scaffold7580 |
16576 |
16885 |
- |
PL538 |
Unspecified |
| scaffold7580 |
16999 |
17028 |
+ |
(TTTCGTG)n |
Simple_repeat |
| scaffold7580 |
17443 |
19914 |
- |
Copia25-PTR_I-int |
LTR/Copia |
| scaffold7580 |
20163 |
20294 |
+ |
ATENSPM1 |
DNA/CMC-EnSpm |
| scaffold7580 |
20621 |
20639 |
+ |
(A)n |
Simple_repeat |
| scaffold7580 |
20651 |
21227 |
+ |
MuDR-9_SBi |
DNA/MULE-MuDR |
| scaffold7580 |
21244 |
21417 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold7580 |
21779 |
21910 |
+ |
EnSpm-1_GM |
DNA/CMC-EnSpm |
| scaffold7580 |
22101 |
23234 |
+ |
cacta |
cacta(TransposonPSI) |
| scaffold7580 |
22655 |
23230 |
+ |
ENSPM_AC |
DNA/CMC-EnSpm |
| scaffold7580 |
23420 |
24225 |
+ |
PSL |
DNA/CMC-EnSpm |
| scaffold7580 |
24788 |
25140 |
+ |
EnSpm-3_STu |
DNA/CMC-EnSpm |
| scaffold7580 |
25387 |
25460 |
+ |
(GAGGAT)n |
Simple_repeat |
| scaffold7580 |
25608 |
25639 |
+ |
(AT)n |
Simple_repeat |
| scaffold7580 |
26077 |
26107 |
+ |
(TATTT)n |
Simple_repeat |
| scaffold7580 |
26490 |
26744 |
+ |
RS1136 |
Unspecified |
| scaffold7580 |
26771 |
27193 |
- |
RS232 |
Unspecified |
| scaffold7580 |
27617 |
27654 |
+ |
(ATATG)n |
Simple_repeat |
| scaffold7580 |
27776 |
27904 |
- |
ATENSPM1A |
DNA/CMC-EnSpm |
| scaffold7580 |
28014 |
28110 |
+ |
ATENSPM4 |
DNA/CMC-EnSpm |
| scaffold7580 |
28929 |
28969 |
+ |
(TTA)n |
Simple_repeat |
| scaffold7580 |
30505 |
30526 |
+ |
(T)n |
Simple_repeat |
| scaffold7580 |
30936 |
30961 |
+ |
(A)n |
Simple_repeat |
| scaffold7580 |
31557 |
31605 |
+ |
(CATATT)n |
Simple_repeat |
| scaffold7580 |
33115 |
33166 |
+ |
(CACAA)n |
Simple_repeat |
| scaffold7580 |
34766 |
34799 |
+ |
A-rich |
Low_complexity |
| scaffold7580 |
36819 |
37052 |
- |
PL396 |
Unspecified |
| scaffold7580 |
38069 |
38134 |
+ |
A-rich |
Low_complexity |
| scaffold7580 |
38725 |
38744 |
+ |
(T)n |
Simple_repeat |
| scaffold7580 |
39121 |
39200 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold7580 |
40490 |
40525 |
+ |
(TTC)n |
Simple_repeat |
| scaffold7580 |
40707 |
40997 |
+ |
RS6184 |
Unspecified |
| scaffold7580 |
42754 |
42840 |
+ |
(TTTACAA)n |
Simple_repeat |
| scaffold7580 |
43734 |
44474 |
- |
LINE |
LINE(TransposonPSI) |
| scaffold7580 |
43811 |
44437 |
- |
L1-1_GM |
LINE/L1 |
| scaffold7580 |
45331 |
45406 |
- |
L1-5_STu |
LINE/L1 |
| scaffold7580 |
46253 |
46276 |
+ |
(CCTT)n |
Simple_repeat |
| scaffold7580 |
47805 |
47868 |
+ |
(TGAT)n |
Simple_repeat |
| scaffold7580 |
48184 |
48222 |
+ |
(TTGTTGA)n |
Simple_repeat |
| scaffold7580 |
48683 |
48733 |
+ |
(TTATT)n |
Simple_repeat |
| scaffold7580 |
49621 |
49666 |
+ |
(TTA)n |
Simple_repeat |
| scaffold7580 |
50944 |
50963 |
+ |
(A)n |
Simple_repeat |
| scaffold7580 |
51175 |
51226 |
+ |
A-rich |
Low_complexity |
| scaffold7580 |
51587 |
51623 |
+ |
A-rich |
Low_complexity |
| scaffold7580 |
51705 |
51744 |
+ |
(ACATTA)n |
Simple_repeat |
| scaffold7580 |
54341 |
54667 |
+ |
RS1110 |
Unspecified |
| scaffold7580 |
54782 |
54832 |
+ |
(TATTT)n |
Simple_repeat |
| scaffold7580 |
55587 |
55744 |
- |
Gypsy18-PTR_I-int |
LTR/Gypsy |
| scaffold7580 |
55782 |
55865 |
+ |
HAT-11_Mad |
DNA/hAT-Tip100 |
| scaffold7580 |
56656 |
56700 |
+ |
(AC)n |
Simple_repeat |
| scaffold7580 |
57522 |
57615 |
+ |
(CATA)n |
Simple_repeat |
| scaffold7580 |
58000 |
58086 |
+ |
(CATA)n |
Simple_repeat |
| scaffold7580 |
58344 |
58368 |
+ |
(AGA)n |
Simple_repeat |
| scaffold7580 |
59125 |
59297 |
- |
RS616 |
Unspecified |
| scaffold7580 |
59309 |
59768 |
- |
RS5939 |
Unspecified |
| scaffold7580 |
61458 |
61515 |
+ |
(AT)n |
Simple_repeat |
| scaffold7580 |
62820 |
62872 |
+ |
PL175 |
Unspecified |
| scaffold7580 |
62827 |
62872 |
- |
PL570 |
Unspecified |
| scaffold7580 |
62875 |
63049 |
+ |
PIGY-I_PS |
LTR/Gypsy |
| scaffold7580 |
63789 |
63825 |
+ |
(CCGG)n |
Simple_repeat |
| scaffold7580 |
64062 |
64101 |
+ |
Gypsy-10_Mad-I |
LTR/Gypsy |
| scaffold7580 |
64226 |
64352 |
- |
RS756 |
Unspecified |
| scaffold7580 |
65198 |
65230 |
+ |
G-rich |
Low_complexity |
| scaffold7580 |
65460 |
65623 |
- |
L1-4_VC |
LINE/L1 |
| scaffold7580 |
65896 |
67042 |
- |
RS878 |
Unspecified |
| scaffold7580 |
66808 |
67155 |
- |
RS44 |
Unspecified |
| scaffold7580 |
67533 |
67578 |
+ |
(TTGAGC)n |
Simple_repeat |
| scaffold7580 |
67929 |
67999 |
- |
Gypsy-10_Pru-LTR |
LTR/Gypsy |
| scaffold7580 |
69268 |
71087 |
- |
RS200 |
Unspecified |
| scaffold7580 |
70151 |
71670 |
- |
RS801 |
Unspecified |
| scaffold7580 |
71072 |
71929 |
- |
RS105 |
Unspecified |
| scaffold7580 |
71713 |
72234 |
- |
PL383 |
Unspecified |
| scaffold7580 |
71769 |
72550 |
+ |
RS2700 |
Unspecified |
| scaffold7580 |
77842 |
77882 |
+ |
(TGAAAAA)n |
Simple_repeat |
| scaffold7580 |
78784 |
78834 |
+ |
(TCATAA)n |
Simple_repeat |
| scaffold7580 |
79357 |
79403 |
+ |
(AATCAA)n |
Simple_repeat |
| scaffold7580 |
80557 |
80584 |
+ |
(A)n |
Simple_repeat |
| scaffold7580 |
80757 |
80792 |
+ |
RS869 |
Unspecified |
| scaffold7580 |
82580 |
83169 |
- |
RS2012 |
Unspecified |
| scaffold7580 |
84837 |
85426 |
- |
RS2012 |
Unspecified |
| scaffold7580 |
85570 |
85663 |
+ |
Copia-88_ST-LTR |
LTR/Copia |
| scaffold7580 |
86184 |
86773 |
- |
RS2012 |
Unspecified |
| scaffold7580 |
86917 |
87010 |
+ |
Copia-88_ST-LTR |
LTR/Copia |
| scaffold7580 |
87662 |
87966 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold7580 |
87662 |
87683 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold7580 |
87677 |
87966 |
- |
RS8 |
Unspecified |
| scaffold7580 |
88237 |
88261 |
+ |
(T)n |
Simple_repeat |
| scaffold7580 |
88850 |
88939 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold7580 |
88955 |
89201 |
+ |
RS12770 |
Unspecified |
| scaffold7580 |
89324 |
89417 |
+ |
Copia-88_ST-LTR |
LTR/Copia |
| scaffold7580 |
90069 |
90090 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold7580 |
90069 |
90373 |
+ |
(TTAA)n |
Simple_repeat |
| scaffold7580 |
90084 |
90373 |
- |
RS8 |
Unspecified |
| scaffold7580 |
90716 |
90749 |
+ |
(AGAACTT)n |
Simple_repeat |
| scaffold7580 |
91263 |
91298 |
+ |
(TA)n |
Simple_repeat |
| scaffold7580 |
92114 |
92211 |
- |
LTR-7_Mad-LTR |
LTR |
| scaffold7580 |
92544 |
92560 |
+ |
(T)n |
Simple_repeat |
| scaffold7580 |
92728 |
92765 |
+ |
(ACTTTAA)n |
Simple_repeat |
| scaffold7580 |
93745 |
93804 |
+ |
(GAGCT)n |
Simple_repeat |
| scaffold7580 |
93977 |
94005 |
+ |
(T)n |
Simple_repeat |
| scaffold7580 |
94083 |
94341 |
- |
RS3905 |
Unspecified |
| scaffold7580 |
95528 |
95960 |
+ |
PL194 |
Unspecified |
| scaffold7580 |
96429 |
96447 |
+ |
(T)n |
Simple_repeat |
| scaffold7580 |
97198 |
97296 |
+ |
(TTTTCTGAAG)n |
Simple_repeat |
| scaffold7580 |
97307 |
97335 |
+ |
(ATT)n |
Simple_repeat |
| scaffold7580 |
97446 |
97478 |
+ |
(T)n |
Simple_repeat |
| scaffold7580 |
97509 |
97547 |
+ |
(TTTTTAA)n |
Simple_repeat |
| scaffold7580 |
98373 |
98410 |
+ |
A-rich |
Low_complexity |
| scaffold7580 |
98415 |
98728 |
- |
PL330 |
Unspecified |
| scaffold7580 |
98734 |
98827 |
+ |
RS756 |
Unspecified |
| scaffold7580 |
98806 |
98928 |
+ |
RS1675 |
Unspecified |
| scaffold7580 |
99093 |
99199 |
+ |
(ATTT)n |
Simple_repeat |
| scaffold7580 |
100662 |
100725 |
+ |
(GATA)n |
Simple_repeat |
| scaffold7580 |
100811 |
100880 |
+ |
(TTGAG)n |
Simple_repeat |
| scaffold7580 |
100952 |
101667 |
- |
PL205 |
Unspecified |
| scaffold7580 |
102431 |
103155 |
+ |
RS49 |
Unspecified |
| scaffold7580 |
103157 |
104915 |
- |
PL124 |
Unspecified |
| scaffold7580 |
104905 |
105268 |
+ |
GYPSY3-I_MT |
LTR/Gypsy |
| scaffold7580 |
105823 |
106863 |
+ |
GYPSY3-I_MT |
LTR/Gypsy |
| scaffold7580 |
107251 |
107289 |
+ |
A-rich |
Low_complexity |
| scaffold7580 |
111178 |
111269 |
+ |
(CAAGCA)n |
Simple_repeat |
| scaffold7580 |
112539 |
113085 |
- |
RS2713 |
Unspecified |
| scaffold7580 |
113366 |
113510 |
+ |
(ATTGG)n |
Simple_repeat |
| scaffold7580 |
113595 |
114662 |
- |
RS658 |
Unspecified |
| scaffold7580 |
114664 |
115188 |
+ |
PL714 |
Unspecified |
| scaffold7580 |
115572 |
115622 |
+ |
(CAA)n |
Simple_repeat |
| scaffold7580 |
117732 |
117765 |
+ |
A-rich |
Low_complexity |
| scaffold7580 |
117768 |
117789 |
+ |
(T)n |
Simple_repeat |
| scaffold7580 |
119391 |
119434 |
+ |
A-rich |
Low_complexity |
| scaffold7580 |
119462 |
119914 |
- |
Copia-4_SL-LTR |
LTR/Copia |
| scaffold7580 |
120388 |
120443 |
- |
RS791 |
Unspecified |
| scaffold7580 |
120470 |
120600 |
+ |
(CTGAA)n |
Simple_repeat |
| scaffold7580 |
120610 |
120886 |
- |
RS791 |
Unspecified |
| scaffold7580 |
120916 |
120939 |
+ |
(TAT)n |
Simple_repeat |
| scaffold7580 |
121510 |
121617 |
+ |
RS2386 |
Unspecified |
| scaffold7580 |
121510 |
121596 |
- |
RS41 |
Unspecified |
| scaffold7580 |
121604 |
121812 |
- |
RS41 |
Unspecified |
| scaffold7580 |
121957 |
122123 |
+ |
RS16954 |
Unspecified |
| scaffold7580 |
122922 |
122955 |
+ |
(ATACA)n |
Simple_repeat |
| scaffold7580 |
123291 |
123457 |
+ |
RS16954 |
Unspecified |
| scaffold7580 |
123588 |
123625 |
+ |
(TAA)n |
Simple_repeat |
| scaffold7580 |
124202 |
124245 |
+ |
A-rich |
Low_complexity |
| scaffold7580 |
125204 |
125238 |
+ |
A-rich |
Low_complexity |
| scaffold7580 |
125657 |
125712 |
+ |
(AAT)n |
Simple_repeat |
| scaffold7580 |
126844 |
126972 |
+ |
(T)n |
Simple_repeat |
| scaffold7580 |
126944 |
126972 |
+ |
(T)n |
Simple_repeat |
| scaffold7580 |
129844 |
129867 |
+ |
(AAT)n |
Simple_repeat |
| scaffold7580 |
130356 |
130896 |
- |
PL862 |
Unspecified |
| scaffold7580 |
130795 |
131258 |
+ |
PL334 |
Unspecified |
| scaffold7580 |
131258 |
131938 |
+ |
PL919 |
Unspecified |
| scaffold7580 |
132221 |
132318 |
+ |
(TGTAA)n |
Simple_repeat |
| scaffold7580 |
132626 |
132658 |
+ |
A-rich |
Low_complexity |
| scaffold7580 |
133084 |
133124 |
+ |
A-rich |
Low_complexity |
| scaffold7580 |
133382 |
133930 |
+ |
MuDR_A_B |
MuDR_A_B(TransposonPSI) |
| scaffold7580 |
134061 |
134094 |
+ |
(TATT)n |
Simple_repeat |
| scaffold7580 |
134061 |
134387 |
+ |
(TATT)n |
Simple_repeat |
| scaffold7580 |
134090 |
134387 |
- |
RS3936 |
Unspecified |
| scaffold7580 |
135922 |
135965 |
+ |
(TTGTT)n |
Simple_repeat |
| scaffold7580 |
136070 |
136194 |
+ |
A-rich |
Low_complexity |
| scaffold7580 |
136195 |
136221 |
+ |
(AAAT)n |
Simple_repeat |
| scaffold7580 |
136222 |
136351 |
+ |
A-rich |
Low_complexity |
| scaffold7580 |
136355 |
136424 |
+ |
(ACCAGCC)n |
Simple_repeat |
| scaffold7580 |
136501 |
136547 |
+ |
(GCCGCCT)n |
Simple_repeat |
| scaffold7580 |
136668 |
136722 |
+ |
(CCCGC)n |
Simple_repeat |
| scaffold7580 |
136784 |
136848 |
+ |
A-rich |
Low_complexity |
| scaffold7580 |
137774 |
138049 |
+ |
RS5929 |
Unspecified |
| scaffold7580 |
137820 |
138102 |
- |
RS9870 |
Unspecified |
| scaffold7580 |
138188 |
138431 |
+ |
RS3190 |
Unspecified |
| scaffold7580 |
138696 |
139240 |
- |
RS804 |
Unspecified |
| scaffold7580 |
139275 |
139325 |
+ |
A-rich |
Low_complexity |
| scaffold7580 |
139326 |
139333 |
+ |
(TAA)n |
Simple_repeat |
| scaffold7580 |
139443 |
139478 |
- |
GmCOPIA10_I-int |
LTR/Copia |
| scaffold7580 |
139685 |
139915 |
+ |
RS13355 |
Unspecified |
| scaffold7580 |
140130 |
140168 |
+ |
(T)n |
Simple_repeat |
| scaffold7580 |
140273 |
140303 |
+ |
(T)n |
Simple_repeat |
| scaffold7580 |
140838 |
142417 |
- |
GmCOPIA10_I-int |
LTR/Copia |
| scaffold7580 |
142817 |
143698 |
- |
GmCOPIA10_I-int |
LTR/Copia |
| scaffold7580 |
143818 |
144194 |
- |
GmCOPIA10_I-int |
LTR/Copia |
| scaffold7580 |
145083 |
146450 |
- |
TY1_Copia |
TY1_Copia(TransposonPSI) |
| scaffold7580 |
145902 |
146303 |
- |
Copia-10_TC-I |
LTR/Copia |
| scaffold7580 |
146517 |
146639 |
- |
Copia-36_BD-I |
LTR/Copia |
| scaffold7580 |
147327 |
147880 |
- |
RS804 |
Unspecified |