Dca16574.1
Annotation
- 3-exons
- f-1
- sp|A5CBQ4_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#ORFNames=VITISV_013115#GO:0003676;GO:0015074#1F1P0C
- AT1G21280.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7447690-7448403 REVERSE LENGTH=237
- Repeat List (scaffold1822)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca16574.1 |
354 |
420 |
725 |
4.41 |
67 |
46 |
8e-09
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|A5CBQ4_VITVI |
230 |
299 |
1178 |
5.94 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca16574.1 |
11 |
227 |
725 |
9.37 |
217 |
31 |
3e-25
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT1G21280.1 |
13 |
232 |
237 |
92.82 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold1822 |
Augustus |
mRNA |
25193 |
28044 |
. |
+ |
. |
ID=Dca16574.1;Parent=Dca16574 |
| scaffold1822 |
Augustus |
exon |
25193 |
26242 |
. |
+ |
. |
ID=Dca16574.1.exon1;Parent=Dca16574.1 |
| scaffold1822 |
Augustus |
exon |
26581 |
26790 |
. |
+ |
. |
ID=Dca16574.1.exon2;Parent=Dca16574.1 |
| scaffold1822 |
Augustus |
exon |
27127 |
28044 |
. |
+ |
. |
ID=Dca16574.1.exon3;Parent=Dca16574.1 |
