Dca31199.1
Annotation
- 3-exons
- f-1
- sp|Q10IE2_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g35560#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold3135)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca31199.1 |
37 |
528 |
549 |
41.53 |
492 |
41 |
7e-113
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q10IE2_ORYSJ |
89 |
645 |
1248 |
44.63 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca31199.1 |
288 |
549 |
549 |
19.67 |
262 |
41 |
3e-53
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
492 |
759 |
1428 |
18.76 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold3135 |
Augustus |
mRNA |
33190 |
35634 |
. |
+ |
. |
ID=Dca31199.1;Parent=Dca31199 |
| scaffold3135 |
Augustus |
exon |
33190 |
33743 |
. |
+ |
. |
ID=Dca31199.1.exon1;Parent=Dca31199.1 |
| scaffold3135 |
Augustus |
exon |
34171 |
34388 |
. |
+ |
. |
ID=Dca31199.1.exon2;Parent=Dca31199.1 |
| scaffold3135 |
Augustus |
exon |
34757 |
35634 |
. |
+ |
. |
ID=Dca31199.1.exon3;Parent=Dca31199.1 |
