Dca45554.1
Annotation
- 4-exons
- f-1
- sp|D3IVU0_9POAL#Putative retrotransposon protein#Phyllostachys edulis#unknown#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold5355)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca45554.1 |
296 |
419 |
425 |
16.94 |
124 |
59 |
1e-37
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|D3IVU0_9POAL |
770 |
893 |
896 |
13.83 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca45554.1 |
296 |
410 |
425 |
10.58 |
115 |
40 |
1e-15
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os11t0656500-01 |
1272 |
1384 |
1401 |
8.06 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold5355 |
Augustus |
mRNA |
80 |
4275 |
. |
- |
. |
ID=Dca45554.1;Parent=Dca45554 |
| scaffold5355 |
Augustus |
exon |
80 |
470 |
. |
- |
. |
ID=Dca45554.1.exon1;Parent=Dca45554.1 |
| scaffold5355 |
Augustus |
exon |
3222 |
3252 |
. |
- |
. |
ID=Dca45554.1.exon2;Parent=Dca45554.1 |
| scaffold5355 |
Augustus |
exon |
3354 |
3947 |
. |
- |
. |
ID=Dca45554.1.exon3;Parent=Dca45554.1 |
| scaffold5355 |
Augustus |
exon |
4014 |
4275 |
. |
- |
. |
ID=Dca45554.1.exon4;Parent=Dca45554.1 |
