Dca45964.1
Annotation
- 4-exons
- f-1
- sp|A5C4G3_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#ORFNames=VITISV_020888#GO:0003723;GO:0003964;GO:0015074;GO:0006278#2F2P0C
- sp|Q2R193_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os11g39950#GO:0004190;GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006508;GO:0006278#4F3P0C
- Repeat List (scaffold5439)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca45964.1 |
9 |
115 |
187 |
37.43 |
107 |
47 |
1e-28
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|A5C4G3_VITVI |
637 |
786 |
893 |
16.79 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca45964.1 |
59 |
115 |
187 |
14.43 |
57 |
48 |
8e-10
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os03t0627900-01 |
45 |
101 |
230 |
24.78 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold5439 |
Augustus |
mRNA |
19272 |
20596 |
. |
+ |
. |
ID=Dca45964.1;Parent=Dca45964 |
| scaffold5439 |
Augustus |
exon |
19272 |
19452 |
. |
+ |
. |
ID=Dca45964.1.exon1;Parent=Dca45964.1 |
| scaffold5439 |
Augustus |
exon |
19616 |
19837 |
. |
+ |
. |
ID=Dca45964.1.exon2;Parent=Dca45964.1 |
| scaffold5439 |
Augustus |
exon |
20222 |
20278 |
. |
+ |
. |
ID=Dca45964.1.exon3;Parent=Dca45964.1 |
| scaffold5439 |
Augustus |
exon |
20493 |
20596 |
. |
+ |
. |
ID=Dca45964.1.exon4;Parent=Dca45964.1 |
