Dca47196.1
Annotation
- 3-exons
- f-1
- sp|C6JRX9_SORBI#Putative uncharacterized protein Sb0013s009070#Sorghum bicolor (Sorghum) (Sorghum vulgare)#Name=Sb0013s009070#GO:0003676;GO:0015074#1F1P0C
- sp|Q2RBA0_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os11g02700#GO:0003676#1F0P0C
- Repeat List (scaffold571)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca47196.1 |
345 |
813 |
816 |
36.76 |
469 |
64 |
0
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|C6JRX9_SORBI |
264 |
732 |
1219 |
38.47 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca47196.1 |
359 |
811 |
816 |
24.14 |
453 |
44 |
2e-113
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT4G23160.1 |
98 |
554 |
1262 |
36.21 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold571 |
Augustus |
mRNA |
46075 |
50395 |
. |
- |
. |
ID=Dca47196.1;Parent=Dca47196 |
| scaffold571 |
Augustus |
exon |
46075 |
46092 |
. |
- |
. |
ID=Dca47196.1.exon1;Parent=Dca47196.1 |
| scaffold571 |
Augustus |
exon |
47694 |
49322 |
. |
- |
. |
ID=Dca47196.1.exon2;Parent=Dca47196.1 |
| scaffold571 |
Augustus |
exon |
49592 |
50395 |
. |
- |
. |
ID=Dca47196.1.exon3;Parent=Dca47196.1 |
