Dca47337.1
Annotation
- 2-exons
- f-1
- sp|Q2QRQ3_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g26780#GO:0004190;GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006508;GO:0006278#4F3P0C
- Repeat List (scaffold5748)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca47337.1 |
1 |
483 |
483 |
61.69 |
483 |
60 |
3e-172
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QRQ3_ORYSJ |
565 |
1066 |
1226 |
40.94 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca47337.1 |
1 |
359 |
483 |
34.16 |
359 |
43 |
7e-83
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os04t0191000-01 |
613 |
996 |
1539 |
24.95 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold5748 |
Augustus |
mRNA |
3422 |
4962 |
. |
- |
. |
ID=Dca47337.1;Parent=Dca47337 |
| scaffold5748 |
Augustus |
exon |
3422 |
4215 |
. |
- |
. |
ID=Dca47337.1.exon1;Parent=Dca47337.1 |
| scaffold5748 |
Augustus |
exon |
4305 |
4962 |
. |
- |
. |
ID=Dca47337.1.exon2;Parent=Dca47337.1 |
