Dca47341.1
Annotation
- 4-exons
- f-1
- sp|F6GUP7_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_06s0004g06910#unknown#0F0P0C
- AT1G07120.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: inflorescence meristem, petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G18570.1); Has 288 Blast hits to 260 proteins in 50 species: Archae - 0; Bacteria - 8; Metazoa - 27; Fungi - 15; Plants - 163; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). | chr1:2184874-2186580 REVERSE LENGTH=392
- Repeat List (scaffold5749)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
Dca47341.1 |
1 |
172 |
206 |
48.54 |
172 |
57 |
7e-54
|
Target_name |
Start |
End |
Length |
Cov(%) |
sp|F6GUP7_VITVI |
168 |
343 |
376 |
46.8 |
AtOs (Arabidopsis thaliana & Oryza sativa)
Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
Dca47341.1 |
4 |
172 |
206 |
46.11 |
169 |
55 |
1e-51
|
Target_name |
Start |
End |
Length |
Cov(%) |
AT1G07120.1 |
197 |
369 |
392 |
44.13 |
Coding region
seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
scaffold5749 |
Augustus |
mRNA |
22658 |
23892 |
. |
- |
. |
ID=Dca47341.1;Parent=Dca47341 |
scaffold5749 |
Augustus |
exon |
22658 |
22771 |
. |
- |
. |
ID=Dca47341.1.exon1;Parent=Dca47341.1 |
scaffold5749 |
Augustus |
exon |
22877 |
23008 |
. |
- |
. |
ID=Dca47341.1.exon2;Parent=Dca47341.1 |
scaffold5749 |
Augustus |
exon |
23415 |
23526 |
. |
- |
. |
ID=Dca47341.1.exon3;Parent=Dca47341.1 |
scaffold5749 |
Augustus |
exon |
23630 |
23892 |
. |
- |
. |
ID=Dca47341.1.exon4;Parent=Dca47341.1 |