Carnation DB

Dca50154.1

Annotation

10-exons
f-1
sp|B9HYN6_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_771192#GO:0008270#1F0P0C
AT4G21430.1 | Symbols: B160 | Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase | chr4:11407835-11412159 REVERSE LENGTH=927
Repeat List (scaffold634)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca50154.1	238	1030	1060	29.9	793	37	9e-138
Target_name	Start	End	Length	Cov(%)
sp\|B9HYN6_POPTR	9	839	893	93.05

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca50154.1	237	1056	1060	28.67	820	33	9e-116
Target_name	Start	End	Length	Cov(%)
AT4G21430.1	11	891	927	95.03

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold634	Augustus	mRNA	233333	239628	.	+	.	ID=Dca50154.1;Parent=Dca50154
scaffold634	Augustus	exon	233333	234493	.	+	.	ID=Dca50154.1.exon1;Parent=Dca50154.1
scaffold634	Augustus	exon	235325	235470	.	+	.	ID=Dca50154.1.exon2;Parent=Dca50154.1
scaffold634	Augustus	exon	235610	235712	.	+	.	ID=Dca50154.1.exon3;Parent=Dca50154.1
scaffold634	Augustus	exon	236418	236550	.	+	.	ID=Dca50154.1.exon4;Parent=Dca50154.1
scaffold634	Augustus	exon	236653	236716	.	+	.	ID=Dca50154.1.exon5;Parent=Dca50154.1
scaffold634	Augustus	exon	236797	237712	.	+	.	ID=Dca50154.1.exon6;Parent=Dca50154.1
scaffold634	Augustus	exon	238043	238423	.	+	.	ID=Dca50154.1.exon7;Parent=Dca50154.1
scaffold634	Augustus	exon	238533	238605	.	+	.	ID=Dca50154.1.exon8;Parent=Dca50154.1
scaffold634	Augustus	exon	238856	238941	.	+	.	ID=Dca50154.1.exon9;Parent=Dca50154.1
scaffold634	Augustus	exon	239509	239628	.	+	.	ID=Dca50154.1.exon10;Parent=Dca50154.1