Dca5509.1
Annotation
- 3-exons
- f-2
- sp|B9IBF1_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_775465#unknown#0F0P0C
- AT4G28590.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT2G31840.1); Has 114 Blast hits to 112 proteins in 39 species: Archae - 2; Bacteria - 0; Metazoa - 17; Fungi - 6; Plants - 67; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). | chr4:14125367-14126828 REVERSE LENGTH=331
- Repeat List (scaffold12105)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca5509.1 |
1 |
85 |
85 |
76.47 |
85 |
68 |
1e-28
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|B9IBF1_POPTR |
35 |
131 |
131 |
74.04 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca5509.1 |
1 |
78 |
85 |
69.41 |
78 |
66 |
5e-28
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT4G28590.1 |
233 |
322 |
331 |
27.19 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold12105 |
Augustus |
mRNA |
429 |
1321 |
. |
+ |
. |
ID=Dca5509.1;Parent=Dca5509 |
| scaffold12105 |
Augustus |
exon |
429 |
477 |
. |
+ |
. |
ID=Dca5509.1.exon1;Parent=Dca5509.1 |
| scaffold12105 |
Augustus |
exon |
818 |
929 |
. |
+ |
. |
ID=Dca5509.1.exon2;Parent=Dca5509.1 |
| scaffold12105 |
Augustus |
exon |
1224 |
1321 |
. |
+ |
. |
ID=Dca5509.1.exon3;Parent=Dca5509.1 |
