Carnation DB

Dca39600.1

Annotation

8-exons
f-1
sp|D7MJ37_ARALL#Putative uncharacterized protein#Arabidopsis lyrata subsp lyrata (Lyre-leaved rock-cress)#ORFNames=ARALYDRAFT_916150#GO:0016021#0F0P1C
AT5G40780.1 | Symbols: LHT1 | lysine histidine transporter 1 | chr5:16323823-16327082 FORWARD LENGTH=446
Repeat List (scaffold43)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca39600.1	1	51	51	50.98	51	51	3e-06
Target_name	Start	End	Length	Cov(%)
sp\|D7TAN1_VITVI	1	51	51	100

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca39600.1	1	455	455	76.26	455	77	0
Target_name	Start	End	Length	Cov(%)
AT5G40780.1	1	446	446	100

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold43	Augustus	mRNA	176749	179346	.	+	.	ID=Dca39600.1;Parent=Dca39600
scaffold43	Augustus	exon	176749	176799	.	+	.	ID=Dca39600.1.exon1;Parent=Dca39600.1
scaffold43	Augustus	exon	177354	177514	.	+	.	ID=Dca39600.1.exon2;Parent=Dca39600.1
scaffold43	Augus-PASA	exon	177702	178097	.	+	.	ID=Dca39600.1.exon3;Parent=Dca39600.1
scaffold43	Augus-PASA	exon	178187	178580	.	+	.	ID=Dca39600.1.exon4;Parent=Dca39600.1
scaffold43	Augus-PASA	exon	178690	178795	.	+	.	ID=Dca39600.1.exon5;Parent=Dca39600.1
scaffold43	Augus-PASA	exon	178887	178978	.	+	.	ID=Dca39600.1.exon6;Parent=Dca39600.1
scaffold43	Augus-PASA	exon	179074	179142	.	+	.	ID=Dca39600.1.exon7;Parent=Dca39600.1
scaffold43	Augus-PASA	exon	179248	179346	.	+	.	ID=Dca39600.1.exon8;Parent=Dca39600.1