Dca45900.1
Annotation
- 2-exons
- f-1
- sp|Q10IB2_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g35940#GO:0003676;GO:0015074#1F1P0C
- Repeat List (scaffold5425)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca45900.1 |
1 |
250 |
252 |
61.9 |
250 |
59 |
5e-85
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q10IB2_ORYSJ |
382 |
649 |
649 |
41.29 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca45900.1 |
5 |
179 |
252 |
22.22 |
175 |
32 |
3e-17
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
1126 |
1292 |
1428 |
11.69 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold5425 |
Augustus |
mRNA |
23073 |
24019 |
. |
- |
. |
ID=Dca45900.1;Parent=Dca45900 |
| scaffold5425 |
Augustus |
exon |
23073 |
23295 |
. |
- |
. |
ID=Dca45900.1.exon1;Parent=Dca45900.1 |
| scaffold5425 |
Augustus |
exon |
23484 |
24019 |
. |
- |
. |
ID=Dca45900.1.exon2;Parent=Dca45900.1 |
