Carnation DB

Dca53837.1

Annotation

17-exons
f-1
sp|B9HCP7_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_1122718#GO:0030246;GO:0003824;GO:0005975#2F1P0C
AT2G22620.1 | Symbols: | Rhamnogalacturonate lyase family protein | chr2:9604902-9610156 REVERSE LENGTH=677
Repeat List (scaffold726)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca53837.1	110	745	801	44.69	636	57	0
Target_name	Start	End	Length	Cov(%)
sp\|B9HCP7_POPTR	46	653	674	90.2

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca53837.1	110	745	801	43.57	636	55	0
Target_name	Start	End	Length	Cov(%)
AT2G22620.1	49	656	677	89.8

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold726	Augustus	mRNA	103427	109787	.	+	.	ID=Dca53837.1;Parent=Dca53837
scaffold726	Augustus	exon	103427	103630	.	+	.	ID=Dca53837.1.exon1;Parent=Dca53837.1
scaffold726	Augustus	exon	103736	103845	.	+	.	ID=Dca53837.1.exon2;Parent=Dca53837.1
scaffold726	Augustus	exon	105180	105222	.	+	.	ID=Dca53837.1.exon3;Parent=Dca53837.1
scaffold726	Augustus	exon	105312	105694	.	+	.	ID=Dca53837.1.exon4;Parent=Dca53837.1
scaffold726	Augustus	exon	105804	105923	.	+	.	ID=Dca53837.1.exon5;Parent=Dca53837.1
scaffold726	Augustus	exon	106014	106149	.	+	.	ID=Dca53837.1.exon6;Parent=Dca53837.1
scaffold726	Augustus	exon	106262	106432	.	+	.	ID=Dca53837.1.exon7;Parent=Dca53837.1
scaffold726	Augustus	exon	106552	106707	.	+	.	ID=Dca53837.1.exon8;Parent=Dca53837.1
scaffold726	Augustus	exon	106792	106898	.	+	.	ID=Dca53837.1.exon9;Parent=Dca53837.1
scaffold726	Augustus	exon	107011	107095	.	+	.	ID=Dca53837.1.exon10;Parent=Dca53837.1
scaffold726	Augustus	exon	107163	107304	.	+	.	ID=Dca53837.1.exon11;Parent=Dca53837.1
scaffold726	Augustus	exon	107410	107569	.	+	.	ID=Dca53837.1.exon12;Parent=Dca53837.1
scaffold726	Augustus	exon	107665	107781	.	+	.	ID=Dca53837.1.exon13;Parent=Dca53837.1
scaffold726	Augustus	exon	107876	108002	.	+	.	ID=Dca53837.1.exon14;Parent=Dca53837.1
scaffold726	Augustus	exon	108112	108292	.	+	.	ID=Dca53837.1.exon15;Parent=Dca53837.1
scaffold726	Augustus	exon	109530	109590	.	+	.	ID=Dca53837.1.exon16;Parent=Dca53837.1
scaffold726	Augustus	exon	109685	109787	.	+	.	ID=Dca53837.1.exon17;Parent=Dca53837.1