Dca6738.1
Annotation
- 2-exons
- f-1
- sp|Q2QQ28_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g32440#GO:0003676;GO:0008270#2F0P0C
- Repeat List (scaffold12672)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca6738.1 |
21 |
314 |
314 |
45.85 |
294 |
49 |
1e-76
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QQ28_ORYSJ |
365 |
627 |
829 |
31.72 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca6738.1 |
19 |
167 |
314 |
18.15 |
149 |
37 |
1e-24
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
469 |
625 |
1428 |
10.99 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold12672 |
Augustus |
mRNA |
5147 |
6379 |
. |
+ |
. |
ID=Dca6738.1;Parent=Dca6738 |
| scaffold12672 |
Augustus |
exon |
5147 |
5645 |
. |
+ |
. |
ID=Dca6738.1.exon1;Parent=Dca6738.1 |
| scaffold12672 |
Augustus |
exon |
5934 |
6379 |
. |
+ |
. |
ID=Dca6738.1.exon2;Parent=Dca6738.1 |
